NO03G05490, NO03G05490 (gene) Nannochloropsis oceanica

Overview
NameNO03G05490
Unique NameNO03G05490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2455
Alignment locationchr3:1576240..1578694 -

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Properties
Property NameValue
DescriptionZinc finger ccch domain-containing protein 63
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1576240..1578694 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR000571Znf_CCCH
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
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BLAST of NO03G05490 vs. NCBI_GenBank
Match: EWM30017.1 (zinc finger ccch domain-containing protein 63 [Nannochloropsis gaditana])

HSP 1 Score: 647.5 bits (1669), Expect = 3.200e-182
Identity = 334/420 (79.52%), Postives = 368/420 (87.62%), Query Frame = 0 
Query:   60 SQAGANAPFQCKHVLDGACTYGPSRCRFIHGVEFHTNGVDLEAHEGAVRGLASDANCLYTFGEDGVIKTYSWTPGTGITGCKQQTGGGPGTFFTTSDPAHTFYFYGFQQPLFPGLPTGAESGLVGRAQMFFNNASTDLLMSEECPYADPSKVLACVAWEMPAPQPPHIFTAGEDGHIRTWSFHAEQARFVVGSTYVGHTRAVTALILAATEXXXXXXXXXXXXXXXXXXCATHALEWTSTAVGVFRRPSEPAQQSHEGHLEGITDMCSLVCEGQSFLATCSKDGSVRIWSMQGGGLGVTMPLDFPTGGALKLCQVTVGPEGGGSGGNEPSSAGSSSLLAVAYESGHLVFWTLPGLETYLVVDPPYAGKPGXXXXXXXXXXXXVTSLVTLSPGIVATGSSDGVLKVWIVHAP----GGGSS 476
            +QAG  APFQCKH LDG C++GPSRCR++HGV+FH NGVDLEAH+GA+RGLASDANCLYTFGEDG+IKTYSWTPGTGITGCK+Q GGGPG+FFTTSDP H FYFYGF+QPL PGL   +E+ LVGRAQMFFNNASTDL +S++CPY DP KVLACVAWEMPAP PPHIFTAGEDG I +WS++AEQARFVVG+TYVGHTR VTALILAATE XXXXXXXXXXXXXXX  CA+HALEWTSTAVGVFRR SEP  Q HEGH+EGITDMCSLVCEGQSFLAT S+DGSVRIWS+QGG LGVT+PLDFPTG A+KLCQV  G EGGGS   +P+  G  S L VAYESGH+VFWTLPGLETYLV+DPPYAGKPGXXXXXXXXX   VTSLVTL+PGI+ATGSSDGVLKVW VH P    GGG +
Sbjct:   79 NQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGL--SSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENXXXXXXXXXXXXXXXWNCASHALEWTSTAVGVFRRLSEP-PQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGS---DPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGXXXXXXXXXGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPAVGIGGGGA 492
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BLAST of NO03G05490 vs. NCBI_GenBank
Match: XP_005854461.1 (zinc finger ccch domain-containing protein 63, partial [Nannochloropsis gaditana CCMP526] >EKU21894.1 zinc finger ccch domain-containing protein 63, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 595.9 bits (1535), Expect = 1.100e-166
Identity = 294/364 (80.77%), Postives = 324/364 (89.01%), Query Frame = 0 
Query:   66 APFQCKHVLDGACTYGPSRCRFIHGVEFHTNGVDLEAHEGAVRGLASDANCLYTFGEDGVIKTYSWTPGTGITGCKQQTGGGPGTFFTTSDPAHTFYFYGFQQPLFPGLPTGAESGLVGRAQMFFNNASTDLLMSEECPYADPSKVLACVAWEMPAPQPPHIFTAGEDGHIRTWSFHAEQARFVVGSTYVGHTRAVTALILAATEXXXXXXXXXXXXXXXXXXCATHALEWTSTAVGVFRRPSEPAQQSHEGHLEGITDMCSLVCEGQSFLATCSKDGSVRIWSMQGGGLGVTMPLDFPTGGALKLCQVTVGPEGGGSGGNEPSSAGSSSLLAVAYESGHLVFWTLPGLETYLVVDPPYAGKPG 430
            APFQCKH LDG C++GPSRCR++HGV+FH NGVDLEAH+GA+RGLASDANCLYTFGEDG+IKTYSWTPGTGITGCK+Q GGGPG+FFTTSDP H FYFYGF+QPL PGL   +E+ LVGRAQMFFNNASTDL +S++CPY DP KVLACVAWEMPAP PPHIFTAGEDG I +WS++AEQARFVVG+TYVGHTR VTALILAATE XXXXXXXXXXXXXXX  CA+HALEWTSTAVGVFRR SEP  Q HEGH+EGITDMCSLVCEGQSFLAT S+DGSVRIWS+QGG LGVT+PLDFPTG A+KLCQV  G EGGGS   +P+  G  S L VAYESGH+VFWTLPGLETYLV+DPPYAGKPG
Sbjct:   63 APFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGL--SSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENXXXXXXXXXXXXXXXWNCASHALEWTSTAVGVFRRLSEP-PQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGS---DPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPG 420
The following BLAST results are available for this feature:
BLAST of NO03G05490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30017.13.200e-18279.52zinc finger ccch domain-containing protein 63 [Nan... [more]
XP_005854461.11.100e-16680.77zinc finger ccch domain-containing protein 63, par... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005325NSK005325Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05490.1NO03G05490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|16734gene_1761Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100391g4gene628Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05490.1NO03G05490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05490 ID=NO03G05490|Name=NO03G05490|organism=Nannochloropsis oceanica|type=gene|length=2455bp
ATCACAGAGGCCTAGAACCTAGTTGGAGCGGGGCTGTTGCGAGAGCTAGC
GAATAAGGCTAGCCAACACCTTGCTTCTCCAGCGACTGGAGGCAACAGAC
GCCAGCCGAGCATCCTCCCCATCGCGCAAGCTCCCCTCCATCTGGGTACG
CCTAGCAGCAGCAGGGCACCAAGAGGAGCACCAGCAGTAGAAGCAGCAGT
AACAATTTTAGTAGTACCTGCACCAACAAAAATATGAACGGTGGCAGCGG
GCGTGGGAGTTGGGGAGGTGGAGGGGGCGGCGGAGGGCATCAAGGAGGAG
GTGGAAGAGGAAGAGGAGGAGGAGGGCGCAACAACTATCACTTTGGTCGG
GGCGGAAGAAGgtacgtgtaccatatggatccatcttgagtgctgtcatg
tgccaatggtgccatagctcgcccttcatgccctctctctttcatgtccc
tccctactaattgttccacgctcttccacttgaataccaccgccgatggt
gctgcgggtggcgcaggtgggggaagtggtggtaacgatgctttctggca
cctgtataggctggcctgcacgagaatttgagctgctaacaaataataat
atgcgtagtcctacccgtggctactttcccctatcgatggagacgagatg
tagccgtcgaagtaaatcaaatgactcctacttacataccacgacatccg
tgctcacaccccgttctttatccaccctgctctcccgtgcacccttcagA
GGCGGTGGCCGTGGTTATCAAGGACGTGGTGGGCGTGGTGGCGACACATC
CCAAGCAGGGGCCAATGCGCCTTTTCAATGCAAGCACGTGTTGGACGGCG
CGTGCACGTACGGCCCGTCCCGATGTCGATTTATCCATGGCGTGGAGTTT
CACACGAACGGGGTGGACTTGGAAGCGCACGAGGGGGCGGTCAGGGGCCT
AGCGAGCGATGCGAATTGTTTGTACACCTTTGGGGAGGACGGGGTAATCA
AAACGTACAGCTGGACGCCGGgtaagggatgcagggagggagagagagag
caagagaaagggcacacatgaatcaaagagacgaattctttgcgtggtaa
caagcaggaagatcttctgcattataaagtgcagctgaatcaacttacta
ctggcccttctcccttttttcctccttccaacgcctaccgcgaggaattc
actcccccctccctctcctcccccctcgtgttccttccccccttcctcct
cagGCACAGGCATCACCGGATGCAAGCAGCAAACGGGTGGAGGCCCGGGC
ACATTCTTTACTACCTCTGACCCCGCCCACACCTTTTACTTCTACGGCTT
TCAACAGCCTCTCTTCCCCGGCCTGCCCACCGGCGCCGAGTCGGGGCTCG
TGGGCCGTGCTCAAATGTTCTTCAATAACGCGTCGACCGACCTGCTTATG
TCCGAGGAGTGTCCTTACGCCGATCCAAGCAAAGTATTGGCCTGCGTGGC
CTGGGAGATGCCTGCGCCTCAACCCCCCCACATTTTCACCGCCGGTGAAG
ACGGTCACATTCGCACCTGGTCTTTTCACGCGGAGCAAGCACGATTCGTC
GTCGGGAGCACATACGTTGGACATACCCGTGCAGTGACTGCGCTCATTCT
CGCGGCGACTGAGAACCCGCCCTTGCTCTACTCGGCAGGGCTGGACGGAA
CGATCCGATGCTGGAATTGCGCGACGCACGCATTGGAGTGGACAAGCACG
GCTGTGGGGGTCTTTCGTCGCCCGTCCGAGCCTGCGCAACAATCTCATGA
GGGCCACCTGGAGGGAATCACGGACATGTGTTCTTTGGTATGTGAGGGGC
AGTCGTTCTTGGCCACGTGCAGCAAGGATGGAAGTGTGAGAATCTGGTCC
ATGCAGGGGGGGGGACTGGGCGTGACCATGCCGTTGGACTTCCCAACGGG
CGGAGCGTTGAAGCTGTGCCAAGTAACGGTCGGGCCTGAGGGAGGAGGGT
CTGGAGGGAACGAGCCGTCATCGGCGGGGTCGTCGTCCTTGTTGGCAGTG
GCGTATGAGAGCGGGCACTTGGTGTTTTGGACGCTGCCGGGGCTGGAGAC
GTATTTGGTGGTAGACCCACCATATGCGGGAAAACCAGGGGGCAGGTCGG
GAGGGAGGGAAGGGGGTGGATCGTATGTCACGTCTCTGGTGACGTTGAGT
CCGGGGATAGTGGCTACAGGGTCGTCGGATGGAGTGTTGAAGGTGTGGAT
CGTGCACGCTCCGGGAGGGGGGTCGTCGTAGGGGTGAGGGAGTCAAAGAG
AGAGGGAAAGATGGGGAGAGTGCTCTTACCATCTCGAAGGGCGGGGTAAA
AGTGAGCTATGTGGATGCCTACAACAGCGGAGGTAAGAACAGAGCAAGCA
GAAAAAGGAGGAGAATTAAGAAGTAAAGAAAGAAAGAAGAAAAACATAAG
GTATA
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protein sequence of NO03G05490.1

>NO03G05490.1-protein ID=NO03G05490.1-protein|Name=NO03G05490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MNGGSGRGSWGGGGGGGGHQGGGGRGRGGGGRNNYHFGRGGRRGGGRGYQ
GRGGRGGDTSQAGANAPFQCKHVLDGACTYGPSRCRFIHGVEFHTNGVDL
EAHEGAVRGLASDANCLYTFGEDGVIKTYSWTPGTGITGCKQQTGGGPGT
FFTTSDPAHTFYFYGFQQPLFPGLPTGAESGLVGRAQMFFNNASTDLLMS
EECPYADPSKVLACVAWEMPAPQPPHIFTAGEDGHIRTWSFHAEQARFVV
GSTYVGHTRAVTALILAATENPPLLYSAGLDGTIRCWNCATHALEWTSTA
VGVFRRPSEPAQQSHEGHLEGITDMCSLVCEGQSFLATCSKDGSVRIWSM
QGGGLGVTMPLDFPTGGALKLCQVTVGPEGGGSGGNEPSSAGSSSLLAVA
YESGHLVFWTLPGLETYLVVDPPYAGKPGGRSGGREGGGSYVTSLVTLSP
GIVATGSSDGVLKVWIVHAPGGGSS*
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Synonyms
Publications