NO03G05490.1, NO03G05490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05490.1
Unique NameNO03G05490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1835
Alignment locationchr3:1576240..1578694 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1576240..1578694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05490.1 vs.
Match: EWM30017.1 (zinc finger ccch domain-containing protein 63 [Nannochloropsis gaditana])

HSP 1 Score: 725.7 bits (1872), Expect = 9.300e-206
Identity = 350/442 (79.19%), Postives = 388/442 (87.78%), Query Frame = 0 
Query:   39 RGGRRG-GGRGYQGRGGRGGDTSQAGANAPFQCKHVLDGACTYGPSRCRFIHGVEFHTNGVDLEAHEGAVRGLASDANCLYTFGEDGVIKTYSWTPGTGITGCKQQTGGGPGTFFTTSDPAHTFYFYGFQQPLFPGLPTGAESGLVGRAQMFFNNASTDLLMSEECPYADPSKVLACVAWEMPAPQPPHIFTAGEDGHIRTWSFHAEQARFVVGSTYVGHTRAVTALILAATENPPLLYSAGLDGTIRCWNCATHALEWTSTAVGVFRRPSEPAQQSHEGHLEGITDMCSLVCEGQSFLATCSKDGSVRIWSMQGGGLGVTMPLDFPTGGALKLCQVTVGPEGGGSGGNEPSSAGSSSLLAVAYESGHLVFWTLPGLETYLVVDPPYAGKPGGRSGGREGGGSYVTSLVTLSPGIVATGSSDGVLKVWIVHAP----GGGSS 476
            +GG  G GGRG+ GRGG G   +QAG  APFQCKH LDG C++GPSRCR++HGV+FH NGVDLEAH+GA+RGLASDANCLYTFGEDG+IKTYSWTPGTGITGCK+Q GGGPG+FFTTSDP H FYFYGF+QPL PGL   +E+ LVGRAQMFFNNASTDL +S++CPY DP KVLACVAWEMPAP PPHIFTAGEDG I +WS++AEQARFVVG+TYVGHTR VTALILAATENPPLLYSAGLDGTIRCWNCA+HALEWTSTAVGVFRR SEP  Q HEGH+EGITDMCSLVCEGQSFLAT S+DGSVRIWS+QGG LGVT+PLDFPTG A+KLCQV  G EGGGS   +P+  G  S L VAYESGH+VFWTLPGLETYLV+DPPYAGKPGGR+GGREGGG+YVTSLVTL+PGI+ATGSSDGVLKVW VH P    GGG +
Sbjct:   59 KGGVIGRGGRGHSGRGGPG--VNQAGQGAPFQCKHTLDGTCSWGPSRCRYVHGVDFHANGVDLEAHKGAIRGLASDANCLYTFGEDGIIKTYSWTPGTGITGCKEQNGGGPGSFFTTSDPTHAFYFYGFRQPLVPGL--SSETSLVGRAQMFFNNASTDLTVSDDCPYTDPRKVLACVAWEMPAPSPPHIFTAGEDGRIYSWSYNAEQARFVVGATYVGHTRPVTALILAATENPPLLYSAGLDGTIRCWNCASHALEWTSTAVGVFRRLSEP-PQPHEGHVEGITDMCSLVCEGQSFLATSSQDGSVRIWSIQGGNLGVTLPLDFPTGAAVKLCQVAAGGEGGGS---DPAGLGPPSFLVVAYESGHMVFWTLPGLETYLVIDPPYAGKPGGRAGGREGGGAYVTSLVTLNPGIIATGSSDGVLKVWSVHRPAVGIGGGGA 492
The following BLAST results are available for this feature:
BLAST of NO03G05490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30017.19.300e-20679.19zinc finger ccch domain-containing protein 63 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05490NO03G05490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05490.1NO03G05490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05490.1.cds1NO03G05490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05490.1.cds2NO03G05490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05490.1.cds3NO03G05490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05490.1 ID=NO03G05490.1|Name=NO03G05490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp
ATCACAGAGGCCTAGAACCTAGTTGGAGCGGGGCTGTTGCGAGAGCTAGC
GAATAAGGCTAGCCAACACCTTGCTTCTCCAGCGACTGGAGGCAACAGAC
GCCAGCCGAGCATCCTCCCCATCGCGCAAGCTCCCCTCCATCTGGGTACG
CCTAGCAGCAGCAGGGCACCAAGAGGAGCACCAGCAGTAGAAGCAGCAGT
AACAATTTTAGTAGTACCTGCACCAACAAAAATATGAACGGTGGCAGCGG
GCGTGGGAGTTGGGGAGGTGGAGGGGGCGGCGGAGGGCATCAAGGAGGAG
GTGGAAGAGGAAGAGGAGGAGGAGGGCGCAACAACTATCACTTTGGTCGG
GGCGGAAGAAGAGGCGGTGGCCGTGGTTATCAAGGACGTGGTGGGCGTGG
TGGCGACACATCCCAAGCAGGGGCCAATGCGCCTTTTCAATGCAAGCACG
TGTTGGACGGCGCGTGCACGTACGGCCCGTCCCGATGTCGATTTATCCAT
GGCGTGGAGTTTCACACGAACGGGGTGGACTTGGAAGCGCACGAGGGGGC
GGTCAGGGGCCTAGCGAGCGATGCGAATTGTTTGTACACCTTTGGGGAGG
ACGGGGTAATCAAAACGTACAGCTGGACGCCGGGCACAGGCATCACCGGA
TGCAAGCAGCAAACGGGTGGAGGCCCGGGCACATTCTTTACTACCTCTGA
CCCCGCCCACACCTTTTACTTCTACGGCTTTCAACAGCCTCTCTTCCCCG
GCCTGCCCACCGGCGCCGAGTCGGGGCTCGTGGGCCGTGCTCAAATGTTC
TTCAATAACGCGTCGACCGACCTGCTTATGTCCGAGGAGTGTCCTTACGC
CGATCCAAGCAAAGTATTGGCCTGCGTGGCCTGGGAGATGCCTGCGCCTC
AACCCCCCCACATTTTCACCGCCGGTGAAGACGGTCACATTCGCACCTGG
TCTTTTCACGCGGAGCAAGCACGATTCGTCGTCGGGAGCACATACGTTGG
ACATACCCGTGCAGTGACTGCGCTCATTCTCGCGGCGACTGAGAACCCGC
CCTTGCTCTACTCGGCAGGGCTGGACGGAACGATCCGATGCTGGAATTGC
GCGACGCACGCATTGGAGTGGACAAGCACGGCTGTGGGGGTCTTTCGTCG
CCCGTCCGAGCCTGCGCAACAATCTCATGAGGGCCACCTGGAGGGAATCA
CGGACATGTGTTCTTTGGTATGTGAGGGGCAGTCGTTCTTGGCCACGTGC
AGCAAGGATGGAAGTGTGAGAATCTGGTCCATGCAGGGGGGGGGACTGGG
CGTGACCATGCCGTTGGACTTCCCAACGGGCGGAGCGTTGAAGCTGTGCC
AAGTAACGGTCGGGCCTGAGGGAGGAGGGTCTGGAGGGAACGAGCCGTCA
TCGGCGGGGTCGTCGTCCTTGTTGGCAGTGGCGTATGAGAGCGGGCACTT
GGTGTTTTGGACGCTGCCGGGGCTGGAGACGTATTTGGTGGTAGACCCAC
CATATGCGGGAAAACCAGGGGGCAGGTCGGGAGGGAGGGAAGGGGGTGGA
TCGTATGTCACGTCTCTGGTGACGTTGAGTCCGGGGATAGTGGCTACAGG
GTCGTCGGATGGAGTGTTGAAGGTGTGGATCGTGCACGCTCCGGGAGGGG
GGTCGTCGTAGGGGTGAGGGAGTCAAAGAGAGAGGGAAAGATGGGGAGAG
TGCTCTTACCATCTCGAAGGGCGGGGTAAAAGTGAGCTATGTGGATGCCT
ACAACAGCGGAGGTAAGAACAGAGCAAGCAGAAAAAGGAGGAGAATTAAG
AAGTAAAGAAAGAAAGAAGAAAAACATAAGGTATA
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protein sequence of NO03G05490.1

>NO03G05490.1-protein ID=NO03G05490.1-protein|Name=NO03G05490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MNGGSGRGSWGGGGGGGGHQGGGGRGRGGGGRNNYHFGRGGRRGGGRGYQ
GRGGRGGDTSQAGANAPFQCKHVLDGACTYGPSRCRFIHGVEFHTNGVDL
EAHEGAVRGLASDANCLYTFGEDGVIKTYSWTPGTGITGCKQQTGGGPGT
FFTTSDPAHTFYFYGFQQPLFPGLPTGAESGLVGRAQMFFNNASTDLLMS
EECPYADPSKVLACVAWEMPAPQPPHIFTAGEDGHIRTWSFHAEQARFVV
GSTYVGHTRAVTALILAATENPPLLYSAGLDGTIRCWNCATHALEWTSTA
VGVFRRPSEPAQQSHEGHLEGITDMCSLVCEGQSFLATCSKDGSVRIWSM
QGGGLGVTMPLDFPTGGALKLCQVTVGPEGGGSGGNEPSSAGSSSLLAVA
YESGHLVFWTLPGLETYLVVDPPYAGKPGGRSGGREGGGSYVTSLVTLSP
GIVATGSSDGVLKVWIVHAPGGGSS*
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mRNA from alignment at chr3:1576240..1578694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05490.1 ID=NO03G05490.1|Name=NO03G05490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2455bp|location=Sequence derived from alignment at chr3:1576240..1578694- (Nannochloropsis oceanica)
ATCACAGAGGCCTAGAACCTAGTTGGAGCGGGGCTGTTGCGAGAGCTAGC
GAATAAGGCTAGCCAACACCTTGCTTCTCCAGCGACTGGAGGCAACAGAC
GCCAGCCGAGCATCCTCCCCATCGCGCAAGCTCCCCTCCATCTGGGTACG
CCTAGCAGCAGCAGGGCACCAAGAGGAGCACCAGCAGTAGAAGCAGCAGT
AACAATTTTAGTAGTACCTGCACCAACAAAAATATGAACGGTGGCAGCGG
GCGTGGGAGTTGGGGAGGTGGAGGGGGCGGCGGAGGGCATCAAGGAGGAG
GTGGAAGAGGAAGAGGAGGAGGAGGGCGCAACAACTATCACTTTGGTCGG
GGCGGAAGAAGGTACGTGTACCATATGGATCCATCTTGAGTGCTGTCATG
TGCCAATGGTGCCATAGCTCGCCCTTCATGCCCTCTCTCTTTCATGTCCC
TCCCTACTAATTGTTCCACGCTCTTCCACTTGAATACCACCGCCGATGGT
GCTGCGGGTGGCGCAGGTGGGGGAAGTGGTGGTAACGATGCTTTCTGGCA
CCTGTATAGGCTGGCCTGCACGAGAATTTGAGCTGCTAACAAATAATAAT
ATGCGTAGTCCTACCCGTGGCTACTTTCCCCTATCGATGGAGACGAGATG
TAGCCGTCGAAGTAAATCAAATGACTCCTACTTACATACCACGACATCCG
TGCTCACACCCCGTTCTTTATCCACCCTGCTCTCCCGTGCACCCTTCAGA
GGCGGTGGCCGTGGTTATCAAGGACGTGGTGGGCGTGGTGGCGACACATC
CCAAGCAGGGGCCAATGCGCCTTTTCAATGCAAGCACGTGTTGGACGGCG
CGTGCACGTACGGCCCGTCCCGATGTCGATTTATCCATGGCGTGGAGTTT
CACACGAACGGGGTGGACTTGGAAGCGCACGAGGGGGCGGTCAGGGGCCT
AGCGAGCGATGCGAATTGTTTGTACACCTTTGGGGAGGACGGGGTAATCA
AAACGTACAGCTGGACGCCGGGTAAGGGATGCAGGGAGGGAGAGAGAGAG
CAAGAGAAAGGGCACACATGAATCAAAGAGACGAATTCTTTGCGTGGTAA
CAAGCAGGAAGATCTTCTGCATTATAAAGTGCAGCTGAATCAACTTACTA
CTGGCCCTTCTCCCTTTTTTCCTCCTTCCAACGCCTACCGCGAGGAATTC
ACTCCCCCCTCCCTCTCCTCCCCCCTCGTGTTCCTTCCCCCCTTCCTCCT
CAGGCACAGGCATCACCGGATGCAAGCAGCAAACGGGTGGAGGCCCGGGC
ACATTCTTTACTACCTCTGACCCCGCCCACACCTTTTACTTCTACGGCTT
TCAACAGCCTCTCTTCCCCGGCCTGCCCACCGGCGCCGAGTCGGGGCTCG
TGGGCCGTGCTCAAATGTTCTTCAATAACGCGTCGACCGACCTGCTTATG
TCCGAGGAGTGTCCTTACGCCGATCCAAGCAAAGTATTGGCCTGCGTGGC
CTGGGAGATGCCTGCGCCTCAACCCCCCCACATTTTCACCGCCGGTGAAG
ACGGTCACATTCGCACCTGGTCTTTTCACGCGGAGCAAGCACGATTCGTC
GTCGGGAGCACATACGTTGGACATACCCGTGCAGTGACTGCGCTCATTCT
CGCGGCGACTGAGAACCCGCCCTTGCTCTACTCGGCAGGGCTGGACGGAA
CGATCCGATGCTGGAATTGCGCGACGCACGCATTGGAGTGGACAAGCACG
GCTGTGGGGGTCTTTCGTCGCCCGTCCGAGCCTGCGCAACAATCTCATGA
GGGCCACCTGGAGGGAATCACGGACATGTGTTCTTTGGTATGTGAGGGGC
AGTCGTTCTTGGCCACGTGCAGCAAGGATGGAAGTGTGAGAATCTGGTCC
ATGCAGGGGGGGGGACTGGGCGTGACCATGCCGTTGGACTTCCCAACGGG
CGGAGCGTTGAAGCTGTGCCAAGTAACGGTCGGGCCTGAGGGAGGAGGGT
CTGGAGGGAACGAGCCGTCATCGGCGGGGTCGTCGTCCTTGTTGGCAGTG
GCGTATGAGAGCGGGCACTTGGTGTTTTGGACGCTGCCGGGGCTGGAGAC
GTATTTGGTGGTAGACCCACCATATGCGGGAAAACCAGGGGGCAGGTCGG
GAGGGAGGGAAGGGGGTGGATCGTATGTCACGTCTCTGGTGACGTTGAGT
CCGGGGATAGTGGCTACAGGGTCGTCGGATGGAGTGTTGAAGGTGTGGAT
CGTGCACGCTCCGGGAGGGGGGTCGTCGTAGGGGTGAGGGAGTCAAAGAG
AGAGGGAAAGATGGGGAGAGTGCTCTTACCATCTCGAAGGGCGGGGTAAA
AGTGAGCTATGTGGATGCCTACAACAGCGGAGGTAAGAACAGAGCAAGCA
GAAAAAGGAGGAGAATTAAGAAGTAAAGAAAGAAAGAAGAAAAACATAAG
GTATA
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Coding sequence (CDS) from alignment at chr3:1576240..1578694-

>NO03G05490.1 ID=NO03G05490.1|Name=NO03G05490.1|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at chr3:1576240..1578694- (Nannochloropsis oceanica)
ATGAACGGTGGCAGCGGGCGTGGGAGTTGGGGAGGTGGAGGGGGCGGCGG
AGGGCATCAAGGAGGAGGTGGAAGAGGAAGAGGAGGAGGAGGGCGCAACA
ACTATCACTTTGGTCGGGGCGGAAGAAGAGGCGGTGGCCGTGGTTATCAA
GGACGTGGTGGGCGTGGTGGCGACACATCCCAAGCAGGGGCCAATGCGCC
TTTTCAATGCAAGCACGTGTTGGACGGCGCGTGCACGTACGGCCCGTCCC
GATGTCGATTTATCCATGGCGTGGAGTTTCACACGAACGGGGTGGACTTG
GAAGCGCACGAGGGGGCGGTCAGGGGCCTAGCGAGCGATGCGAATTGTTT
GTACACCTTTGGGGAGGACGGGGTAATCAAAACGTACAGCTGGACGCCGG
GCACAGGCATCACCGGATGCAAGCAGCAAACGGGTGGAGGCCCGGGCACA
TTCTTTACTACCTCTGACCCCGCCCACACCTTTTACTTCTACGGCTTTCA
ACAGCCTCTCTTCCCCGGCCTGCCCACCGGCGCCGAGTCGGGGCTCGTGG
GCCGTGCTCAAATGTTCTTCAATAACGCGTCGACCGACCTGCTTATGTCC
GAGGAGTGTCCTTACGCCGATCCAAGCAAAGTATTGGCCTGCGTGGCCTG
GGAGATGCCTGCGCCTCAACCCCCCCACATTTTCACCGCCGGTGAAGACG
GTCACATTCGCACCTGGTCTTTTCACGCGGAGCAAGCACGATTCGTCGTC
GGGAGCACATACGTTGGACATACCCGTGCAGTGACTGCGCTCATTCTCGC
GGCGACTGAGAACCCGCCCTTGCTCTACTCGGCAGGGCTGGACGGAACGA
TCCGATGCTGGAATTGCGCGACGCACGCATTGGAGTGGACAAGCACGGCT
GTGGGGGTCTTTCGTCGCCCGTCCGAGCCTGCGCAACAATCTCATGAGGG
CCACCTGGAGGGAATCACGGACATGTGTTCTTTGGTATGTGAGGGGCAGT
CGTTCTTGGCCACGTGCAGCAAGGATGGAAGTGTGAGAATCTGGTCCATG
CAGGGGGGGGGACTGGGCGTGACCATGCCGTTGGACTTCCCAACGGGCGG
AGCGTTGAAGCTGTGCCAAGTAACGGTCGGGCCTGAGGGAGGAGGGTCTG
GAGGGAACGAGCCGTCATCGGCGGGGTCGTCGTCCTTGTTGGCAGTGGCG
TATGAGAGCGGGCACTTGGTGTTTTGGACGCTGCCGGGGCTGGAGACGTA
TTTGGTGGTAGACCCACCATATGCGGGAAAACCAGGGGGCAGGTCGGGAG
GGAGGGAAGGGGGTGGATCGTATGTCACGTCTCTGGTGACGTTGAGTCCG
GGGATAGTGGCTACAGGGTCGTCGGATGGAGTGTTGAAGGTGTGGATCGT
GCACGCTCCGGGAGGGGGGTCGTCGTAG
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Synonyms
Publications