NO03G05170, NO03G05170 (gene) Nannochloropsis oceanica

Overview
NameNO03G05170
Unique NameNO03G05170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2802
Alignment locationchr3:1467483..1470284 -

Link to JBrowse

Properties
Property NameValue
DescriptionEndonuclease/exonuclease/phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1467483..1470284 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
IPR005135Endo/exonuclease/phosphatase
Vocabulary: Biological Process
TermDefinition
GO:0090305nucleic acid phosphodiester bond hydrolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004527exonuclease activity
GO:0004519endonuclease activity
Homology
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BLAST of NO03G05170 vs. NCBI_GenBank
Match: EWM29958.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 699.1 bits (1803), Expect = 1.500e-197
Identity = 391/790 (49.49%), Postives = 494/790 (62.53%), Query Frame = 0 
Query:    1 MLALPLLASAAKSFSFTLHVSQYNVLAADLANNLKPWFWYGFRGVQPTVPHYTGDAFDEARLQTFGVGRSKLFIDLWCVAKTYLHLFDREPSYPYRIDALAQTGRPENAHPEGPAVALKGLLESATFDFFHRNTTNHAHGNKHLPYHLFDRNSNDYKIWERGLLHPLGYTFTEEEWKEAEALRQGIKTKCYDPVECRKAVDRFNAWLRRTLVCRRRHTHHKGALEHFELSEARIEEEFQEVALEIGTFLSLNESDLGRLLDYQHEMEWEVRSKSIVKEIESMQADVVGLQEVDRIEDLRDKLRRGGEGEREGGLKLAVFKHRKVRPYDDGCALFYNPKVLQLCRLRG---------QGGCMGAKGGEEDESLPAVAVIRYSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---------KAGAGKA----LFRSRLLMTEGIVGCEEVHEGDNDKEAPEKGQAMGGADKISTHKTEEIDLWSFTAPETLRRIHQEKWDERIAVVALLQHRATGRLILAASTHLAHSQDKPAAEAVRAAQVRQLDRALCEIRMAW-LVGKEG--------EEGREEA---VPTLIMMDGNDTPHLSCYGPHRAVVGEIEEGGK-----EGGKVYTPMYQTMAQELGHVDCLGEDYGPTSITLNRRYRIDYIWAKMGVEGKGKEGGKKNERGD----AEGRGEKMVLEKVEVTPALDVQLAGFKNRGKYLVSHDEEATEAVYGLPLPAIEDQPCIPSDHLHVSAHLTFRVDRQGVGGREQKKEGEELLMED 748
            ML +PL++SAAKS SFTL VSQYN+LAA+LANNL+PWFWYGFRGV PTVPHYTGDAFDEAR QTFG GRSKLFIDLWCVA  YL LFD EP+ PYRID L      ++ H EGPAVALK LLE+ATFDFFHRN  N+  GN +L ++LFDR + D+++ E  LL PLGY+ + ++WKEAE LR+ I       V+   A+DRFN WLRR LV RRRH+HHKG LEHFELS+ RIEEEF+EVALE+ TF+SL+ +D+ R+  +QH MEW +R  +I++ IE +QADV+GL+EVD++ED+R+ L          GL++AV+KHR  R   DGCA+FYNP+VL+LCRL G          GG +G   G+      AVAV+RYS E                                     +         + G   A    LFRS L M   IV  E    G+   +     +  GG + +S    + +D W+FTAPE L R   + WD+ +AVVALL+HRATG+ +L   + LAHS +  AA  VRA QVR+L+RAL EIR  W LV  EG        +E R  A   VPTLIMMDGN+ P L    P  A  G   +G       E  KVYTPMY  M +E+G+VD LGE++GPTSITL  R R+DYIW  +  EG+   G K  E GD     + R E + LE V+V+P +DV+LAG +    +LVS  EE  +AVYGLPLPA+EDQ CIPSDH+ VSA L FR++R   GG  +  +  E+L E+
Sbjct:    1 MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLRPWFWYGFRGVSPTVPHYTGDAFDEARFQTFGAGRSKLFIDLWCVATKYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDKTLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHL-------EARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPR---AVAVVRYSAEAYMVCSEEKHQQHGHHQPHSSKRGEYQGQCQQQQPTANGIPDCPTARRRGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVS---EDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGAVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIW--VTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN 775
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BLAST of NO03G05170 vs. NCBI_GenBank
Match: XP_005853354.1 (carbon catabolite repressor protein 4-like 4 [Nannochloropsis gaditana CCMP526] >EKU23007.1 carbon catabolite repressor protein 4-like 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 582.8 bits (1501), Expect = 1.500e-162
Identity = 347/777 (44.66%), Postives = 448/777 (57.66%), Query Frame = 0 
Query:    1 MLALPLLASAAKSFSFTLHVSQYNVLAADLANNLKPWFWYGFRGVQPTVPHYTGDAFDEARLQTFGVGRSKLFIDLWCVAKTYLHLFDREPSYPYRIDALAQTGRPENAHPEGPAVALKGLLESATFDFFHRNTTNHAHGNKHLPYHLFDRNSNDYKIWERGLLHPLGYTFTEEEWKEAEALRQGIKTKCYDPVECRKAVDRFNAWLRRTLVCRRRHTHHKGALEHFELSEARIEEEFQEVALEIGTFLSLNESDLGRLLDYQHEMEWEVRSKSIVKEIESMQADVVGLQEVDRIEDLRDKLRRGGEGEREGGLKLAVFKHRKVRPYDDGCALFYNPKVLQLCRLRG---------QGGCMGAKGGEEDESLPAVAVIRYSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAGAGKALFRSRLLMTEGIVGCEEVHEGDNDKEAPEKGQAMGGADKISTHKTEEIDLWSFTAPETLRRIHQEKWDERIAVVALLQHRATGRLILAASTHLAHSQDKPAAEAVRAAQVRQLDRALCEIRMAW-LVGKEG--------EEGREEA---VPTLIMMDGNDTPHLSCYGPHRAVVGEIEEGGK-----EGGKVYTPMYQTMAQELGHVDCLGEDYGPTSITLNRRYRIDYIWAKMGVEGKGKEGGKKNERGD----AEGRGEKMVLEKVEVTPALDVQLAGFKNRGKYLVSHDEEATEAVYGLPLPAIEDQPCIPSDHLHVSAHLTFRVDRQGVGGREQKKEGEELLMED 748
            ML +PL++SAAKS SFTL VSQYN+LAA+LANNL                                              + YL LFD EP+ PYRID L      ++ H EGPAVALK LLE+ATFDFFHRN  N+  GN +L ++LFDR + D+++ E  LL PLGY+ + ++WKEAE LR+ I       V+   A+DRFN WLRR LV RRRH+HHKG LEHFELS+ RIEEEF+EVALE+ TF+SL+ +D+ R+  +QH MEW +R  +I++ IE +QADV+GL+EVD++ED+R+ L          GL++AV+KHR  R   DGCA+FYNP+VL+LCRL G          GG +G   G+      AVAV+RYS E                                             LFRS L M   IV  E    G+   +     +  GG + +S    + +D W+FTAPE L R   + WD+ +AVVALL+HRATG+ +L   + LAHS +  AA  VRA QVR+L+RAL EIR  W LV  EG        +E R  A   VPTLIMMDGN+ P L    P  A  G   +G       E  KVYTPMY  M +E+G+VD LGE++GPTSITL  R R+DYIW  +  EG+   G K  E GD     + R E + LE V+V+P +DV+LAG +    +LVS  EE  +AVYGLPLPA+EDQ CIPSDH+ VSA L FR++R   GG  +  +  E+L E+
Sbjct:    1 MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNL----------------------------------------------RKYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDETLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHL-------EARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPR---AVAVVRYSAEAYMQQQPTANGIPDCPTARTRGEVD---------------ADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVS---EDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGTVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIW--VTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN 701
The following BLAST results are available for this feature:
BLAST of NO03G05170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29958.11.500e-19749.49Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
XP_005853354.11.500e-16244.66carbon catabolite repressor protein 4-like 4 [Nann... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005360NSK005360Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05170.1NO03G05170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100567g2gene684Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05170.1NO03G05170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05170 ID=NO03G05170|Name=NO03G05170|organism=Nannochloropsis oceanica|type=gene|length=2802bp
CATACAGGATCGCTGACATGCAACAACCCTGCTGCAACCGAAGCAGTACA
ACCAGGAAAATGCCTGTCGCCAAAAACACGAAAAGCAGCGACATGGCGAG
GGAGGACAGCAGCAGCATGATGAGAGCACGAGCCCCCGAGTGGCATGCCA
CGGTCTAGAAAGAATGGATGCTGATCACATGgtgtgtagtgtgcttgtgg
ccttgtgccctgtgacggggggccctcgtatactcatgtatttatccccc
gtcctttttcttaccaccagAGATCTCGATGTTGGCCCTGCCTCTGTTGG
CTTCTGCTGCGAAGAGTTTCTCCTTCACACTGCACGTTTCTCAGTATAAC
GTGCTAGCCGCCGATCTGGCCAACAATCTCAAGgtaatgtgaagccgggg
gtgaggcaattaagagggaataaccccgctgctttagcgggacgagtatt
gtagcagcataccgttgcaaaatcatccactttgcttcatgcgtcaatgc
cttgtgatgagagaaagaagcctgtccccttccactcacccgactgctcc
ctgccctccttccttcccccttcccccttccccctcttcccacaccaaaa
aagCCATGGTTTTGGTACGGTTTCCGTGGCGTGCAACCCACTGTACCTCA
CTATACAGGTGACGCATTTGATGAGGCACGCCTCCAAACCTTTGGTGTCG
GACGCAGCAAGCTCTTTATCGACCTGTGGTGCGTGGCCAAGACTTATCTC
CATCTCTTCGATCGAGAGCCATCTTACCCATATCGAATTGATGCACTCGC
CCAAACGGGACGACCGGAGAATGCGCACCCTGAAGGGCCTGCGGTGGCGT
TGAAGGGTTTGTTGGAGTCTGCGACATTTGACTTCTTTCATCGGAATACG
ACGAATCATGCACACGGGAACAAGCACTTGCCTTACCATCTGTTTGACCG
AAACAGTAACGATTATAAGATTTGGGAGAGGGGATTGTTGCACCCACTGG
GGTACACATTTACAGAGGAGGAATGGAAGGAGGCCGAGGCACTCCGACAG
GGGATTAAAACCAAGTGTTATGATCCGGTGGAGTGTCGGAAAGCTGTGGA
TAGATTCAATGCGTGGCTGCGACGGACGTTGGTATGTCGGCGAAGGCACA
CGCACCACAAGGGAGCACTGGAACATTTTGAGCTGTCGGAAGCGAGGATA
GAGGAGGAGTTTCAGGAAGTTGCTTTGGAAATAGGGACGTTTCTGAGTCT
GAACGAGTCGGACTTGGGGAGGTTATTGGATTACCAGCATGAGATGGAGT
GGGAGGTGAGGAGCAAGAGTATTGTCAAGGAGATCGAGAGCATGCAGGCC
GATGTGGTGGGCTTACAGGAGGTGGATCGCATCGAGGACTTGAGGGATAA
GCTGCGGCGAGGAGGGGAGGGAGAGAGGGAGGGAGGGTTGAAGTTGGCTG
TGTTTAAGCACCGAAAAGTCAGGCCATATGATGACGGATGTGCTTTGTTT
TACAATCCAAAGGTGTTGCAGTTGTGTCGGTTGAGGGGGCAGGGCGGTTG
TATGGGAGCGAAGGGGGGGGAGGAGGATGAGAGCCTGCCGGCTGTAGCTG
TGATACGTTACAGTGGTGAAGCTGAGGCCAAGCAACAGCTGCAGCAGCAG
CAGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAAAAGAGGTATCAAAAAGAAGGGGCAGTAAAGCGGGTGCAGGAA
AAGCTTTATTTCGCTCGCGGCTGCTAATGACGGAAGGCATTGTAGGCTGC
GAAGAAGTTCATGAAGGAGATAATGATAAAGAAGCACCGGAGAAGGGGCA
AGCCATGGGAGGGGCGGACAAGATATCCACGCATAAAACGGAGGAGATTG
ACTTGTGGTCATTTACGGCGCCTGAGACCTTGCGTCGGATCCATCAGGAG
AAGTGGGATGAGAGGATAGCTGTGGTAGCCTTGCTGCAGCACCGCGCGAC
AGGGCGTTTAATTCTGGCAGCATCCACACACCTTGCTCACTCCCAAGACA
AACCAGCAGCGGAAGCTGTGAGAGCGGCGCAGGTACGGCAGTTGGACCGA
GCTTTGTGCGAGATTCGAATGGCGTGGTTGGTGGGGAAGGAGGGGGAGGA
AGGGAGGGAAGAAGCTGTTCCAACACTGATCATGATGGACGGGAATGACA
CCCCGCATTTGTCGTGTTATGGCCCGCATCGTGCGGTCGTGGGGGAGATA
GAGGAGGGAGGGAAGGAGGGAGGGAAGGTTTACACACCCATGTACCAAAC
TATGGCGCAGGAATTGGGCCACGTTGATTGTCTGGGGGAGGACTATGGTC
CCACGAGCATTACTTTGAATAGGCGATACCGGATCGATTACATCTGGGCA
AAGATGGGGGTCGAAGGAAAAGGGAAGGAGGGAGGAAAAAAAAATGAACG
CGGAGATGCGGAGGGGAGGGGAGAGAAGATGGTGCTGGAGAAGGTCGAGG
TGACCCCGGCATTGGACGTGCAGTTGGCGGGGTTTAAGAACCGGGGTAAA
TATCTGGTATCTCACGACGAAGAAGCGACTGAAGCGGTGTATGGATTGCC
GTTGCCGGCGATCGAGGATCAGCCTTGCATCCCTTCCGATCACTTGCACG
TTTCGGCGCACTTGACGTTTCGTGTGGACCGGCAAGGTGTAGGAGGGAGG
GAGCAGAAGAAGGAAGGGGAGGAGCTGTTAATGGAAGACTCGTAGGTATT
GTATAGATGTGAGAAAGAAGATCTTTTTAAACAAATAAATCACATGCACG
CA
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protein sequence of NO03G05170.1

>NO03G05170.1-protein ID=NO03G05170.1-protein|Name=NO03G05170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MLALPLLASAAKSFSFTLHVSQYNVLAADLANNLKPWFWYGFRGVQPTVP
HYTGDAFDEARLQTFGVGRSKLFIDLWCVAKTYLHLFDREPSYPYRIDAL
AQTGRPENAHPEGPAVALKGLLESATFDFFHRNTTNHAHGNKHLPYHLFD
RNSNDYKIWERGLLHPLGYTFTEEEWKEAEALRQGIKTKCYDPVECRKAV
DRFNAWLRRTLVCRRRHTHHKGALEHFELSEARIEEEFQEVALEIGTFLS
LNESDLGRLLDYQHEMEWEVRSKSIVKEIESMQADVVGLQEVDRIEDLRD
KLRRGGEGEREGGLKLAVFKHRKVRPYDDGCALFYNPKVLQLCRLRGQGG
CMGAKGGEEDESLPAVAVIRYSGEAEAKQQLQQQQREEEEEEEEEEEEEE
EEEKEVSKRRGSKAGAGKALFRSRLLMTEGIVGCEEVHEGDNDKEAPEKG
QAMGGADKISTHKTEEIDLWSFTAPETLRRIHQEKWDERIAVVALLQHRA
TGRLILAASTHLAHSQDKPAAEAVRAAQVRQLDRALCEIRMAWLVGKEGE
EGREEAVPTLIMMDGNDTPHLSCYGPHRAVVGEIEEGGKEGGKVYTPMYQ
TMAQELGHVDCLGEDYGPTSITLNRRYRIDYIWAKMGVEGKGKEGGKKNE
RGDAEGRGEKMVLEKVEVTPALDVQLAGFKNRGKYLVSHDEEATEAVYGL
PLPAIEDQPCIPSDHLHVSAHLTFRVDRQGVGGREQKKEGEELLMEDS*
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Synonyms
Publications