NO03G05080, NO03G05080 (gene) Nannochloropsis oceanica

Overview
NameNO03G05080
Unique NameNO03G05080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr3:1438169..1439451 -

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Properties
Property NameValue
DescriptionSelenoprotein t
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1438169..1439451 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019389Selenoprotein_T
IPR011893Selenoprotein_Rdx-typ
Homology
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_005853672.1 (selenoprotein t [Nannochloropsis gaditana CCMP526] >EKU22686.1 selenoprotein t [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.9 bits (237), Expect = 2.500e-16
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 0
Query:  220 VQVAVFMLMVTGRVVFRLLGAEP-PAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPP---------VGGR-XXXXXXXXXXHLVFSKLATGGMPNGHEILRRLRELGV 326
            + +   +LM+ GR +FR  G  P PAW E +++NK+QT A++LLGNT   SL+ATGAFE+TY+ P           GGR           HL+FSKLA G MP G EIL  L E G+
Sbjct:    1 MDLTAVLLMIAGRPLFRAAGVTPTPAWLEALLSNKLQTLAVVLLGNTLVTSLSATGAFEVTYYEPSPLPPEEEGREGGREEGEEDEAWIPHLIFSKLAMGRMPTGDEILTGLAERGL 117          
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_009041350.1 (hypothetical protein AURANDRAFT_77992, partial [Aureococcus anophagefferens] >EGB03925.1 hypothetical protein AURANDRAFT_77992, partial [Aureococcus anophagefferens])

HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 0
Query:  199 IHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLATGGMPNGHEILRRLRELG 325
            +  E YPPP   +F A      QVA   L++ G  VF+L GA  P W+ ++  NK+  F  + + N  AA + ATGAFEI   G                 L FSKL TG +P+  +++R ++  G
Sbjct:   55 VAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEIHVNG----------------ELAFSKLETGRLPSAADVVRGMKRAG 164          
BLAST of NO03G05080 vs. NCBI_GenBank
Match: CBJ25760.1 (selenoprotein T [Ectocarpus siliculosus])

HSP 1 Score: 74.3 bits (181), Expect = 7.700e-10
Identity = 58/189 (30.69%), Postives = 80/189 (42.33%), Query Frame = 0
Query:  142 PHILVQYC----YRGSFVQLSKFLRHHLPSXXXXXXXXXXXXXXXXXXXXXXXXDPEQTFVIHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLA-TGGMPNGHEILRRLRELGV 326
            P +LVQ+C     R +F +L  FL  H P+                           +   I GE YPPPP A  LAT+ SY QV     ++ G ++F  LG   P +   M  N + T   + + N+   SL ATGAFE++  G                 LVFS+LA  G  P G  +LR   + G+
Sbjct:  154 PQVLVQFCVSXGMRRNFEELRSFLHAHYPAL-------------------------AKAQSIRGELYPPPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDG----------------ELVFSRLAGEGQFPTGALLLREFEKRGL 301          
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_004995650.1 (hypothetical protein PTSG_03057 [Salpingoeca rosetta] >EGD82414.1 hypothetical protein PTSG_03057 [Salpingoeca rosetta])

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-7
Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 0
Query:  198 VIHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWF----ENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLATGGMPNGHEILRRL 321
            VI GENY P P  + +A+I+  +   + +LM+ G  +F  LG  PP  +    EN M   + TF    L NT   +L +TGAFEI   G                 L+FSKL TG MP   E++R L
Sbjct:   30 VIKGENYIPNPNVLTIASIIDLISWTIILLMLFGDYIFNALGIAPPNLYLQAKENSMLVIVMTF---FLSNTIKQNLLSTGAFEIALDG----------------DLLFSKLETGRMPAWPELMRTL 137          
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_008553953.1 (PREDICTED: selT-like protein [Microplitis demolitor])

HSP 1 Score: 65.5 bits (158), Expect = 3.600e-7
Identity = 36/121 (29.75%), Postives = 62/121 (51.24%), Query Frame = 0
Query:  199 IHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMMNNKIQT-FAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLATGGMPNGHEILR 319
            IHG+NY PP Y +F+A  + + ++ + +L+++G  + + LG  P  W++  +NNK+     I  + N     L ++GAFEI +   P                V+SKL TG +P   E+ +
Sbjct:   72 IHGQNYDPPGYNMFMAKFLGFAKILIILLIISGINIAQWLGQPPLFWWDWCLNNKLYACIMIFFICNAIEGQLISSGAFEIHFNDVP----------------VWSKLETGRVPQPPELFQ 176          
The following BLAST results are available for this feature:
BLAST of NO03G05080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853672.12.500e-1645.30selenoprotein t [Nannochloropsis gaditana CCMP526]... [more]
XP_009041350.12.200e-1234.13hypothetical protein AURANDRAFT_77992, partial [Au... [more]
CBJ25760.17.700e-1030.69selenoprotein T [Ectocarpus siliculosus][more]
XP_004995650.12.100e-736.22hypothetical protein PTSG_03057 [Salpingoeca roset... [more]
XP_008553953.13.600e-729.75PREDICTED: selT-like protein [Microplitis demolito... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005371NSK005371Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05080.1NO03G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667596gene_1716Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05080.1NO03G05080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05080 ID=NO03G05080|Name=NO03G05080|organism=Nannochloropsis oceanica|type=gene|length=1283bp
ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT
GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA
CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC
TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC
AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT
CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT
CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC
ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG
GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTgtaca
agctgaggtaattagaaaaaggagggtggagaggagggagagggaagaag
ctggaagatacaagataaaatagttcacgcttgcttcttttcgttcttgt
ctcgcaactaaaggtggcgactttatttttactttgtccatctatcgatt
cctgactgcgtgtgcacagGTTACCGGGGGAGCTTTGTGCAGCTTTCAAA
GTTCCTCCGTCACCACCTGCCGTCCCTCGTCCCCTCCTTCCCCCCATCCT
CCTCCGTGTCCTCCTCCGCCTCCTCCTCCTCTTCCTCCTTTAAGAGTGAC
CCCGAGCAAACGTTCGTTATCCACGGGGAGAACTACCCACCTCCCCCTTA
CGCTATTTTTCTGGCCACGATAATGAGCTATGTTCAGGTAGCCGTGTTTA
TGCTCATGGTCACTGGTCGGGTCGTCTTCCGTCTGCTGGGTGCAGAGCCG
CCAGCATGGTTTGAGAACATGATGAATAACAAGgttcgaaaggatgcgga
tctgcacgacatgcatggtgcatcagctttcccacccttcttcctttgga
tagtaatcataaccctccctccttccccccctccttccctctctccttcc
cccctcctaagATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCC
GCTGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCC
TCCGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATC
TGGTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATT
TTGAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG
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protein sequence of NO03G05080.1

>NO03G05080.1-protein ID=NO03G05080.1-protein|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MADAAKVEEREGFPGQVPAPATQLPPHQQEEQATGVKPQEPLPVNFLRWP
LVVLLFSYIILLYVRDATTAATSTKKEALGVVPSPQSPPHTMGQAPVGIH
PERTAPISQDGTERLPSPSSSSSSPSLMFPIAGGGKNFRQHPHILVQYCY
RGSFVQLSKFLRHHLPSLVPSFPPSSSVSSSASSSSSSFKSDPEQTFVIH
GENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMM
NNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGREGGREGGMVAHL
VFSKLATGGMPNGHEILRRLRELGVE*
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Synonyms
Publications