NO03G05080.1, NO03G05080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05080.1
Unique NameNO03G05080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length981
Alignment locationchr3:1438169..1439451 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1438169..1439451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05080.1 vs.
Match: XP_005853672.1 (selenoprotein t [Nannochloropsis gaditana CCMP526]; EKU22686.1 selenoprotein t [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.2 bits (269), Expect = 4.800e-20
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0 
Query:  220 VQVAVFMLMVTGRVVFRLLGAEP-PAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYF-----GPPVGGREGGREGG-----MVAHLVFSKLATGGMPNGHEILRRLRELGV 326
            + +   +LM+ GR +FR  G  P PAW E +++NK+QT A++LLGNT   SL+ATGAFE+TY+      P   GREGGRE G      + HL+FSKLA G MP G EIL  L E G+
Sbjct:    1 MDLTAVLLMIAGRPLFRAAGVTPTPAWLEALLSNKLQTLAVVLLGNTLVTSLSATGAFEVTYYEPSPLPPEEEGREGGREEGEEDEAWIPHLIFSKLAMGRMPTGDEILTGLAERGL 117
The following BLAST results are available for this feature:
BLAST of NO03G05080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853672.14.800e-2049.57selenoprotein t [Nannochloropsis gaditana CCMP526]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05080NO03G05080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05080.1NO03G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05080.1.cds1NO03G05080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05080.1.cds2NO03G05080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05080.1.cds3NO03G05080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05080.1 ID=NO03G05080.1|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT
GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA
CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC
TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC
AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT
CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT
CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC
ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG
GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTGTTAC
CGGGGGAGCTTTGTGCAGCTTTCAAAGTTCCTCCGTCACCACCTGCCGTC
CCTCGTCCCCTCCTTCCCCCCATCCTCCTCCGTGTCCTCCTCCGCCTCCT
CCTCCTCTTCCTCCTTTAAGAGTGACCCCGAGCAAACGTTCGTTATCCAC
GGGGAGAACTACCCACCTCCCCCTTACGCTATTTTTCTGGCCACGATAAT
GAGCTATGTTCAGGTAGCCGTGTTTATGCTCATGGTCACTGGTCGGGTCG
TCTTCCGTCTGCTGGGTGCAGAGCCGCCAGCATGGTTTGAGAACATGATG
AATAACAAGATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCCGC
TGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCCTC
CGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATCTG
GTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATTTT
GAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG
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protein sequence of NO03G05080.1

>NO03G05080.1-protein ID=NO03G05080.1-protein|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MADAAKVEEREGFPGQVPAPATQLPPHQQEEQATGVKPQEPLPVNFLRWP
LVVLLFSYIILLYVRDATTAATSTKKEALGVVPSPQSPPHTMGQAPVGIH
PERTAPISQDGTERLPSPSSSSSSPSLMFPIAGGGKNFRQHPHILVQYCY
RGSFVQLSKFLRHHLPSLVPSFPPSSSVSSSASSSSSSFKSDPEQTFVIH
GENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMM
NNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGREGGREGGMVAHL
VFSKLATGGMPNGHEILRRLRELGVE*
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mRNA from alignment at chr3:1438169..1439451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05080.1 ID=NO03G05080.1|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp|location=Sequence derived from alignment at chr3:1438169..1439451- (Nannochloropsis oceanica)
ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT
GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA
CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC
TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC
AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT
CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT
CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC
ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG
GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTGTACA
AGCTGAGGTAATTAGAAAAAGGAGGGTGGAGAGGAGGGAGAGGGAAGAAG
CTGGAAGATACAAGATAAAATAGTTCACGCTTGCTTCTTTTCGTTCTTGT
CTCGCAACTAAAGGTGGCGACTTTATTTTTACTTTGTCCATCTATCGATT
CCTGACTGCGTGTGCACAGGTTACCGGGGGAGCTTTGTGCAGCTTTCAAA
GTTCCTCCGTCACCACCTGCCGTCCCTCGTCCCCTCCTTCCCCCCATCCT
CCTCCGTGTCCTCCTCCGCCTCCTCCTCCTCTTCCTCCTTTAAGAGTGAC
CCCGAGCAAACGTTCGTTATCCACGGGGAGAACTACCCACCTCCCCCTTA
CGCTATTTTTCTGGCCACGATAATGAGCTATGTTCAGGTAGCCGTGTTTA
TGCTCATGGTCACTGGTCGGGTCGTCTTCCGTCTGCTGGGTGCAGAGCCG
CCAGCATGGTTTGAGAACATGATGAATAACAAGGTTCGAAAGGATGCGGA
TCTGCACGACATGCATGGTGCATCAGCTTTCCCACCCTTCTTCCTTTGGA
TAGTAATCATAACCCTCCCTCCTTCCCCCCCTCCTTCCCTCTCTCCTTCC
CCCCTCCTAAGATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCC
GCTGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCC
TCCGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATC
TGGTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATT
TTGAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG
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Coding sequence (CDS) from alignment at chr3:1438169..1439451-

>NO03G05080.1 ID=NO03G05080.1|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr3:1438169..1439451- (Nannochloropsis oceanica)
ATGGCCGACGCCGCCAAGGTGGAGGAGCGGGAAGGTTTCCCGGGGCAGGT
GCCAGCCCCAGCCACCCAGTTGCCTCCCCACCAGCAGGAGGAGCAAGCCA
CGGGCGTCAAGCCCCAAGAGCCTCTTCCCGTCAACTTTTTGCGCTGGCCC
TTGGTCGTCCTCCTCTTCTCGTACATAATCCTGCTCTACGTGCGCGACGC
AACGACGGCAGCAACCAGCACCAAAAAGGAAGCCTTGGGAGTTGTTCCTT
CCCCCCAGTCCCCGCCCCACACCATGGGGCAAGCACCGGTGGGGATCCAT
CCAGAGCGCACCGCCCCCATTTCCCAAGATGGCACTGAAAGGCTTCCTTC
ACCTTCTTCTTCCTCTTCTTCTCCTTCTTTAATGTTTCCGATTGCGGGAG
GAGGCAAAAACTTTCGTCAACACCCGCACATTCTGGTGCAGTATTGTTAC
CGGGGGAGCTTTGTGCAGCTTTCAAAGTTCCTCCGTCACCACCTGCCGTC
CCTCGTCCCCTCCTTCCCCCCATCCTCCTCCGTGTCCTCCTCCGCCTCCT
CCTCCTCTTCCTCCTTTAAGAGTGACCCCGAGCAAACGTTCGTTATCCAC
GGGGAGAACTACCCACCTCCCCCTTACGCTATTTTTCTGGCCACGATAAT
GAGCTATGTTCAGGTAGCCGTGTTTATGCTCATGGTCACTGGTCGGGTCG
TCTTCCGTCTGCTGGGTGCAGAGCCGCCAGCATGGTTTGAGAACATGATG
AATAACAAGATCCAAACCTTTGCCATCATTCTCCTCGGCAACACCGCCGC
TGCCTCCCTGGCTGCCACCGGTGCCTTCGAAATAACTTATTTCGGTCCTC
CGGTTGGGGGGAGGGAAGGAGGGAGGGAGGGAGGGATGGTAGCTCATCTG
GTGTTTTCCAAGCTGGCGACGGGAGGGATGCCGAATGGGCATGAGATTTT
GAGGAGGTTGAGGGAGTTGGGGGTGGAGTAG
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Synonyms
Publications