NO03G05010, NO03G05010 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05010
Unique Name	NO03G05010
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2226
Alignment location	chr3:1422068..1424293 +

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1422068..1424293 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_005853869.1 (hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526] >EKU22490.1 hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.6 bits (501), Expect = 1.200e-46
Identity = 105/164 (64.02%), Postives = 126/164 (76.83%), Query Frame = 0

Query:   91 EERPWVPGEELRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSGGNAC 255
            EE PW  GEE R WAV +TLR     A  GL+ S LSSQAIF+LVL +ASL ++ S+TYQR+R+RG+LTYLP STQ LL+ TSLLDWLLD+S+ADRLKPYAV+ +GLNEEER+FLI+SLPP EQRALTAPG+L+ LP  VQ+ LLPR    + GG    GG  C
Sbjct:   97 EEPPWTLGEEFRSWAVEQTLRTTFLFAVAGLITSFLSSQAIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPR-PMGNRGG--REGGREC 257

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: EWM29935.1 (hypothetical protein Naga_100351g7 [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 1.000e-34
Identity = 83/125 (66.40%), Postives = 102/125 (81.60%), Query Frame = 0

Query:  130 AIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSGGNAC 255
            AIF+LVL +ASL ++ S+TYQR+R+RG+LTYLP STQ LL+ TSLLDWLLD+S+ADRLKPYAV+ +GLNEEER+FLI+SLPP EQRALTAPG+L+ LP  VQ+ LLPR    + GG    GG  C
Sbjct:   22 AIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPR-PMGNRGG--REGGREC 143

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_008911006.1 (hypothetical protein PPTG_15974 [Phytophthora parasitica INRA-310] >ETN03779.1 hypothetical protein PPTG_15974 [Phytophthora parasitica INRA-310])

HSP 1 Score: 86.7 bits (213), Expect = 3.000e-13
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 0

Query:  152 VRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:    1 MRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 91

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_009516811.1 (hypothetical protein PHYSODRAFT_476527, partial [Phytophthora sojae] >EGZ29536.1 hypothetical protein PHYSODRAFT_476527, partial [Phytophthora sojae])

HSP 1 Score: 85.5 bits (210), Expect = 6.600e-13
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0

Query:  150 QRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            +  R RGL+ +LP S QELLLQTSLL WL DTS +D++ P+    + L+  E+  L+  +PP  Q  LT PGLL  LP S+Q +LLP
Sbjct:   24 EEARTRGLIGFLPQSAQELLLQTSLLKWLTDTSFSDKVAPFLPFLLPLSRAEQMRLMEQMPPESQMMLTKPGLLPLLPDSMQKVLLP 110

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: CBN79235.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 0

Query:  121 LVRSVLSSQAIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            LV SV S  A+ +L +    +  M       VR+RG L YLP    ELL +T+LL++L DTS+ D +K Y V  MGL+E+E   +++SLP   Q  LT PG+++TLP   Q +LLP
Sbjct:  113 LVVSVFSGSALVFLAVIAIGVCGMC----YSVRQRGALEYLPSGVTELLTRTTLLEFLTDTSVFDAIKTYLVFMMGLSEDETQGVLASLPEDMQYTLTRPGIMHTLPRPFQDLLLP 224

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETK79339.1 (hypothetical protein L915_14799, partial [Phytophthora parasitica] >ETL32751.1 hypothetical protein L916_14713, partial [Phytophthora parasitica] >ETP09068.1 hypothetical protein F441_15068, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-12
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0

Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 253

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETL86018.1 (hypothetical protein L917_14518, partial [Phytophthora parasitica])

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-12
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0

Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 253

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: KUF66913.1 (hypothetical protein AM587_10016189 [Phytophthora nicotianae])

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-12
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0

Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:  113 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 251

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETI39124.1 (hypothetical protein F443_15257, partial [Phytophthora parasitica P1569] >ETM39172.1 hypothetical protein L914_14657, partial [Phytophthora parasitica])

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0

Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ+ LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLPAEDSSD 253

[Close]

BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETO67878.1 (hypothetical protein F444_15244, partial [Phytophthora parasitica P1976])

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0

Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ+ LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLPAEDSSD 253

The following BLAST results are available for this feature:

BLAST of NO03G05010 vs. NCBI_GenBank

BLAST of NO03G05010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005853869.1	1.200e-46	64.02	hypothetical protein NGA_0452500 [Nannochloropsis ...	[more]
EWM29935.1	1.000e-34	66.40	hypothetical protein Naga_100351g7 [Nannochloropsi...	[more]
XP_008911006.1	3.000e-13	49.45	hypothetical protein PPTG_15974 [Phytophthora para...	[more]
XP_009516811.1	6.600e-13	49.43	hypothetical protein PHYSODRAFT_476527, partial [P...	[more]
CBN79235.1	1.100e-12	43.10	conserved unknown protein [Ectocarpus siliculosus]	[more]
ETK79339.1	1.500e-12	41.73	hypothetical protein L915_14799, partial [Phytopht...	[more]
ETL86018.1	1.500e-12	41.73	hypothetical protein L917_14518, partial [Phytopht...	[more]
KUF66913.1	1.500e-12	41.73	hypothetical protein AM587_10016189 [Phytophthora ...	[more]
ETI39124.1	2.500e-12	41.73	hypothetical protein F443_15257, partial [Phytopht...	[more]
ETO67878.1	2.500e-12	41.73	hypothetical protein F444_15244, partial [Phytopht...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL069	nonsL069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR054	ngnoR054	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005381	NSK005381	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G05010.1	NO03G05010.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627006	gene_1708	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100351g7	gene705	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G05010.1	NO03G05010.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G05010 ID=NO03G05010|Name=NO03G05010|organism=Nannochloropsis oceanica|type=gene|length=2226bp
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGCTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCACCAGCAAAACAGCAGCAGC
AGGAACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCC
TCCTCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAG
TTGAAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGG
GAGCAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGC
CAGCTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAG
GGGTGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGG
GGAGGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTT
AGCAGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGG
AGGAGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTA
TGGGAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGC
TGGTGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGAC
GACCTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTT
TTCCTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCG
TTTGCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCT
CCTCCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGA
ATGATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAA
TCAAAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCT
TCCCAACCATGCCGTCTGCAGTATGTGCCTGCCATGACCCAGCGAGTCAC
CCGAGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTC
CACTTCGCACAGGCGTGGCCCTCGTTTGCGGGCAACAAAAGAAAGAAAGA
GGGAGACGCGCGTTCAGCGAGACAAA

protein sequence of NO03G05010.1

>NO03G05010.1-protein ID=NO03G05010.1-protein|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MSQCKRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTT
TTVRSSTTNNGRGLMTRRQGDGQGSGNNWGGNDEEEDGQGEERPWVPGEE
LRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQ
RVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEE
ERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSG
GNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRL
QEMDERRQREEGREGEEEAEEVMTASETDEEDEYLDEQEDGGESGRRSSN
RMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPAFPLSSTSYHHHHQQNSSS
RNTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAW
EQAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGR
GGGAGGVVQRYGRMAVLAGTVVLALHDAYFASKEEEEEGEEEEEESAEGL
WEEEEGEEGLLGADFAAGVSMGQQRRGRGRGQGRPRQQQPRVWMQWGAFF
FLLLLIRTGRLAPILRRLRAAFPASFPSSSSSSSSSSLLLGASGRR*

Synonyms

Publications