NO03G05010.1, NO03G05010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05010.1
Unique NameNO03G05010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2226
Alignment locationchr3:1422068..1424293 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1422068..1424293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G05010.1 vs.
Match: XP_005853869.1 (hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526]; EKU22490.1 hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 213.8 bits (543), Expect = 1.600e-51
Identity = 203/517 (39.26%), Postives = 266/517 (51.45%), Query Frame = 0 
Query:    5 KRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTTTTVRSSTTNNGRGLMTRRQGDGQG-------SGNNWGGNDEEEDGQGEERPWVPGEELRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSGGNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRLQEMDERRQREEG--REGEEEAEEVMTASETDEEDEYL---DEQEDG---GESGRRSSNRMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPAFPLSSTSYHHHHQQNSSSRNTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAWEQAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGRGGGAGG 507
            ++LL D         + AA  V  AGG G    +++      + T T  R +++NN       R  + +G       +G+   GNDE+++   EE PW  GEE R WAV +TLR     A  GL+ S LSSQAIF+LVL +ASL ++ S+TYQR+R+RG+LTYLP STQ LL+ TSLLDWLLD+S+ADRLKPYAV+ +GLNEEER+FLI+SLPP EQRALTAPG+L+ LP  VQ+ LLPR    + GG    GG  C                 G G G  G R R+EE+SE +AA +TRRR QEM ERRQ E G  R GEEE E+     E +EE+E     +  E+G   G +  R       + PR      GR+ +   P     +  A  +      H   ++++ R    +      Q        RP+   W A G V  VA+ V+ R L        RGS  A   G TA             +   VA  GG    +   G GGG GG
Sbjct:    4 RKLLLDGSTESRLPGAQAALTVFRAGGGGSGSNREREAQHNQNSTPTAEREASSNNNNNNNNARTIEREGGQAPRGQNGHGGTGNDEDDEEAREEPPWTLGEEFRSWAVEQTLRTTFLFAVAGLITSFLSSQAIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPR-PMGNRGG--REGGREC-----------------GHGRGGGGDRRRVEEVSEAEAATLTRRRWQEM-ERRQLEGGARRRGEEEGEDEEEEEEEEEEEEETTASETSEEGMKEGGAATREGAGAEEESPRHALGEEGRSGEHLAPVD---VDEAVAMVMRRRLHRVWEDAAHRGREAVVEAVRAQLHRQWTWQRPL---WVAGGAV--VASEVVARILEG------RGSGRAGRRGRTAGW------VGVASLVAYVAYMGGREEGE--EGGGGGRGG 477
The following BLAST results are available for this feature:
BLAST of NO03G05010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853869.11.600e-5139.26hypothetical protein NGA_0452500 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05010NO03G05010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05010.1NO03G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05010.1.cds1NO03G05010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05010.1 ID=NO03G05010.1|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGCTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCACCAGCAAAACAGCAGCAGC
AGGAACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCC
TCCTCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAG
TTGAAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGG
GAGCAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGC
CAGCTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAG
GGGTGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGG
GGAGGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTT
AGCAGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGG
AGGAGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTA
TGGGAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGC
TGGTGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGAC
GACCTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTT
TTCCTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCG
TTTGCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCT
CCTCCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGA
ATGATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAA
TCAAAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCT
TCCCAACCATGCCGTCTGCAGTATGTGCCTGCCATGACCCAGCGAGTCAC
CCGAGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTC
CACTTCGCACAGGCGTGGCCCTCGTTTGCGGGCAACAAAAGAAAGAAAGA
GGGAGACGCGCGTTCAGCGAGACAAA
back to top

protein sequence of NO03G05010.1

>NO03G05010.1-protein ID=NO03G05010.1-protein|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MSQCKRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTT
TTVRSSTTNNGRGLMTRRQGDGQGSGNNWGGNDEEEDGQGEERPWVPGEE
LRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQ
RVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEE
ERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSG
GNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRL
QEMDERRQREEGREGEEEAEEVMTASETDEEDEYLDEQEDGGESGRRSSN
RMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPAFPLSSTSYHHHHQQNSSS
RNTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAW
EQAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGR
GGGAGGVVQRYGRMAVLAGTVVLALHDAYFASKEEEEEGEEEEEESAEGL
WEEEEGEEGLLGADFAAGVSMGQQRRGRGRGQGRPRQQQPRVWMQWGAFF
FLLLLIRTGRLAPILRRLRAAFPASFPSSSSSSSSSSLLLGASGRR*
back to top

mRNA from alignment at chr3:1422068..1424293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05010.1 ID=NO03G05010.1|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr3:1422068..1424293+ (Nannochloropsis oceanica)
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGCTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCACCAGCAAAACAGCAGCAGC
AGGAACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCC
TCCTCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAG
TTGAAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGG
GAGCAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGC
CAGCTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAG
GGGTGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGG
GGAGGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTT
AGCAGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGG
AGGAGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTA
TGGGAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGC
TGGTGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGAC
GACCTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTT
TTCCTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCG
TTTGCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCT
CCTCCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGA
ATGATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAA
TCAAAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCT
TCCCAACCATGCCGTCTGCAGTATGTGCCTGCCATGACCCAGCGAGTCAC
CCGAGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTC
CACTTCGCACAGGCGTGGCCCTCGTTTGCGGGCAACAAAAGAAAGAAAGA
GGGAGACGCGCGTTCAGCGAGACAAA
back to top

Coding sequence (CDS) from alignment at chr3:1422068..1424293+

>NO03G05010.1 ID=NO03G05010.1|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=CDS|length=1941bp|location=Sequence derived from alignment at chr3:1422068..1424293+ (Nannochloropsis oceanica)
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGCTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCACCAGCAAAACAGCAGCAGC
AGGAACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCC
TCCTCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAG
TTGAAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGG
GAGCAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGC
CAGCTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAG
GGGTGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGG
GGAGGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTT
AGCAGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGG
AGGAGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTA
TGGGAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGC
TGGTGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGAC
GACCTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTT
TTCCTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCG
TTTGCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCT
CCTCCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAG
back to top
Synonyms
Publications