NO03G04980, NO03G04980 (gene) Nannochloropsis oceanica

Overview
NameNO03G04980
Unique NameNO03G04980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2286
Alignment locationchr3:1415114..1417399 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA primase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1415114..1417399 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006269DNA replication, synthesis of RNA primer
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003896DNA primase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR014052DNA_primase_ssu_euk/arc
IPR002755DNA_primase_S
Homology
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_005853872.1 (DNA primase small subunit [Nannochloropsis gaditana CCMP526] >EKU22493.1 DNA primase small subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 677.9 bits (1748), Expect = 2.200e-191
Identity = 328/454 (72.25%), Postives = 365/454 (80.40%), Query Frame = 0
Query:   27 ATPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            A  A+NDQEFSPELLRFFY RLFPYQ MFKWLSYGNDPD++  H+VRD+F+ REFSFTINDDIYIRYQSFRDA+EME+AIQKKQPHKIDIGAVFT+PPKDHHTVKAEAFKPVERELIFDIDMTDYDDIR+CCTGAKICPKCW+FMTMAVKVVDTALREDFGF+ +LWVYSGRRGVHCWVCD + R L+NDGRSAVVEYLSLPRGNE +  KGKN GL+WPLHPSF RAFDILEPMFE GVLGE GQGVLDSENSWDTLLD+LPDEDLA +LRREMRRLT A++RW EIK+Q+ A +                         ++AL+LWKYEVVF+YCYPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP                                 A+ + DYKKTELK AVELLE+CVV+P+AL  K+R ++ERE+ AAMIGDF
Sbjct:   14 AAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKS--KGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASS-----AHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 460          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: EWM29932.1 (dna primase small subunit [Nannochloropsis gaditana])

HSP 1 Score: 675.6 bits (1742), Expect = 1.100e-190
Identity = 334/483 (69.15%), Postives = 379/483 (78.47%), Query Frame = 0
Query:    5 SSSRRTSTSGTKDKDSMDVA-------GPATPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            S+  R S +G  ++++M++A         A  A+NDQEFSPELLRFFY RLFPYQ MFKWLSYGNDPD++  H+VRD+F+ REFSFTINDDIYIRYQSFRDA+EME+AIQKKQPHKIDIGAVFT+PPKDHHTVKAEAFKPVERELIFDIDMTDYDDIR+CCTGAKICPKCW+FMTMAVKVVDTALREDFGF+ +LWVYSGRRGVHCWVCD + R L+NDGRSAVVEYLSLPRGNE +  KGKN GL+WPLHPSF RAFDILEPMFE GVLGE GQGVLDSENSWDTLLD+LPDEDLA +LRREMRRLT A++RW EIK+Q+ A +                         ++AL+LWKYEVVF+YCYPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP                                 A+ + DYKKTELK AVELLE+CVV+P+AL  K+R ++ERE+ AAMIGDF
Sbjct:   32 STCGRLSAAG--NRENMEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKS--KGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASS-----AHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: CBJ27863.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 458.0 bits (1177), Expect = 3.600e-125
Identity = 235/477 (49.27%), Postives = 304/477 (63.73%), Query Frame = 0
Query:   13 SGTKDKDSMDVAGPATPAVNDQE-FSPELLRFFYTRLFPYQAMFKWLSYGND----PDSEGG----HVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            SG + K    V      A +D+E FSP+LLR +Y RLFPY+ M++WL Y N     PDS G         DFFS+REFSFTI DD+YIRYQ F D  E E  +Q+KQPHKIDIGA+FT+PPK+H  VK  AF+PVEREL+FDID+TDYDD+RTCC+GAKIC +CW +MTMAV+V+D  LR+DFGF+ +LWVYSGRRGVHCWV D+  R LTN+GR AV +Y  +  GN+N S   K   ++ P+HPS  RA++ LEP+F   ++ EEGQG+L   + W  LL ++P++       R     ++  ++W E+  ++  K                              E W+YEVVF++ YPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP  + +FDPF VPTL  L  QID YD EH ++   + VS   KTE+K  V+  E   +  +   ++ + R   ER AA+  DF
Sbjct:   20 SGVESK--APVRSKGVSADDDREAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDSSGKPQPVDEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQRKQPHKIDIGAIFTLPPKNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLRQDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFGVVAGNDNQS---KKVNVSLPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSHWGKLLATVPEDVRQTLEGRWKMGGSSPADKWEELVEEMEKKGRKQQQLAKKMKPADRPPTP----------EQWRYEVVFEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAHVREFDPFTVPTLGQLQRQIDKYDKEHGEE--TKSVSSINKTEMKKYVQQFEDTFLTGLYKGIRVKKRDRTERIAAVTTDF 479          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_002908635.1 (DNA primase small subunit, putative [Phytophthora infestans T30-4] >EEY61718.1 DNA primase small subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 413.3 bits (1061), Expect = 1.000e-111
Identity = 219/452 (48.45%), Postives = 280/452 (61.95%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRRE---MRRLTTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCW+ DE  RGL N+ RSAVV YLSL  GNEN++ K K   L  PLHPS  RA+  LEP+FE  +L ++GQG++ SE  W+ LL  +PDED+   + R      R T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  RE  AAM GD+
Sbjct:    4 EDFSTELLQLYYDRLFPYQQMAQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAVDFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMIAAVKVLNAALREDFGFENLLWVYSGRRGIHCWIADESARGLENEARSAVVGYLSLVEGNENSARKVK---LREPLHPSLDRAYRQLEPLFEDMILSDKGQGIMSSEKQWNKLLAMVPDEDIRANMTRRWSATNRSTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRSAPNSDASKRFLAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDVSSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFLKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_008905361.1 (hypothetical protein PPTG_11896 [Phytophthora parasitica INRA-310] >ETI47177.1 hypothetical protein F443_08551 [Phytophthora parasitica P1569] >ETN09528.1 hypothetical protein PPTG_11896 [Phytophthora parasitica INRA-310] >ETO75858.1 hypothetical protein F444_08620 [Phytophthora parasitica P1976])

HSP 1 Score: 408.3 bits (1048), Expect = 3.300e-110
Identity = 217/452 (48.01%), Postives = 279/452 (61.73%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCWV DE  R L N+ RSAV+ YLSL  GNEN++ K K   L  PLHPS  RA+ +LEP+FE  +L ++GQG++ SE  W+ LL  +PDED+   + R        T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  RE  AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENSARKVK---LREPLHPSLDRAYRLLEPLFEDMILSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_012206785.1 (DNA primase [Saprolegnia parasitica CBS 223.65] >KDO22539.1 DNA primase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 408.3 bits (1048), Expect = 3.300e-110
Identity = 216/451 (47.89%), Postives = 271/451 (60.09%), Query Frame = 0
Query:   33 DQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEE---RWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++ FSPELL  +Y RLFPY+ M KWL Y  D   + G    +  +RREFSFT+ +D+YIRY++FRDA E +  ++K  P KIDIGAVFT+ P D   V A  F P EREL+FD+D+TDYDDIRTCC  AKIC +CW FM  AVKV+DTALREDFGFQ L+WVYSGRRG+HCWV D   R LTND RSAVV+YL+   GNEN   K     L  PLHPS  RA+ ILEP+F   +L ++GQG+L S   W  LL+ +PDED+      +  + TT E    +W  +K  +H    +                                E+VF Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPIDP  ID FDP  VPTL  L  Q++    EH      +  +DY        ++L +   + P+ L + K+ ++  E  AA  GD+
Sbjct:    3 NESFSPELLGLYYDRLFPYELMTKWLGY--DCSMDKGGPGTELLARREFSFTLENDVYIRYKAFRDADEFKTEMKKLMPFKIDIGAVFTVSPADKGKVDAAKFVPEERELVFDVDLTDYDDIRTCCQDAKICARCWRFMVAAVKVLDTALREDFGFQHLMWVYSGRRGIHCWVSDYTARMLTNDARSAVVQYLTTVEGNENTKRK---VVLRDPLHPSLERAYTILEPLFHDIILSDDGQGILSSPEHWKKLLEMVPDEDIRATFHNKWLKTTTTESPATKWANLKAAIHDALHSKKRKQMGDDKRRLLCTCIP-------------EIVFAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDPRKIDIFDPDTVPTLADLERQLNGEATEH-----VKPFTDY--------IKLFDAKFIHPIQLALIKQKKVLAETQAAATGDW 422          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: ETL93689.1 (hypothetical protein L917_08216 [Phytophthora parasitica])

HSP 1 Score: 407.5 bits (1046), Expect = 5.600e-110
Identity = 216/452 (47.79%), Postives = 279/452 (61.73%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCWV DE  R L N+ RSAV+ YLSL  GNEN++ K K   L  PLHPS  RA+ +LEP+FE  ++ ++GQG++ SE  W+ LL  +PDED+   + R        T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  RE  AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENSARKVK---LREPLHPSLDRAYRLLEPLFEDMIMSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPTEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: ETM46927.1 (hypothetical protein L914_08273 [Phytophthora parasitica])

HSP 1 Score: 407.5 bits (1046), Expect = 5.600e-110
Identity = 216/452 (47.79%), Postives = 279/452 (61.73%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCWV DE  R L N+ RSAV+ YLSL  GNEN++ K K   L  PLHPS  RA+ +LEP+FE  ++ ++GQG++ SE  W+ LL  +PDED+   + R        T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  RE  AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENSARKVK---LREPLHPSLDRAYRLLEPLFEDMIMSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: ETK87130.1 (hypothetical protein L915_08382 [Phytophthora parasitica] >ETL40553.1 hypothetical protein L916_08308 [Phytophthora parasitica] >ETP16954.1 hypothetical protein F441_08529 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 406.8 bits (1044), Expect = 9.600e-110
Identity = 217/452 (48.01%), Postives = 278/452 (61.50%), Query Frame = 0
Query:   34 QEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALEL--WKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++FS ELL+ +Y RLFPYQ M +WLSY      +GG    +F  RRE S+T+ +D YIRY++F +A E++ ++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIRTCC GA IC +CW FM  AVKV++ ALREDFGF+ LLWVYSGRRG+HCWV DE  R L N+ RSAV+ YLSL  GNEN + K K   L  PLHPS  RA+ +LEP+FE  +L ++GQG++ SE  W+ LL  +PDED+   + R        T   E+WRE++  +  +                            A EL     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID  +++ FDPFKVPTL  L  ++D               SD   T +K  V+  E   ++P+A V K++ R  RE  AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY------DGG---EEFLFRRELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENLARKVK---LREPLHPSLDRAYRLLEPLFEDMILSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELD---------------SDKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of NO03G04980 vs. NCBI_GenBank
Match: XP_002286900.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96541.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 405.2 bits (1040), Expect = 2.800e-109
Identity = 224/475 (47.16%), Postives = 284/475 (59.79%), Query Frame = 0
Query:   27 ATPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSY---------GNDPDSEGGHVVRDFFSRREFSFTI----NDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTC-CTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPD--EDLALKLRREMRRL---TTAEERWREIKTQLHAKTGNXXXXXXXXXXXXXXXXXXXXXXXMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQD-EVARGVS-DYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            ++PA     FSPELL  +Y RLFPYQ +  WLSY         G+  +S G       F RREFS TI     +++YIRYQSF   AE+  AI K++P KIDIGAVF  PPKD+ ++     +  EREL+FDID+TDYD +R C C+GAKICPKCW FM MAV+V+D  L+ DFGF+ L W YSGRRGVHCWVCDE  R L+N+ RS+V  Y  +  G+E N    KN  L+ PLHP  +RA+ ILEP F   VL E+G  +L +   W  LL +LP     +A KL  +       TT EE+W E+K  L A  G                           +E W  E VFKY YPRLD+NVSK  NHLLKSPF VHPKTGRVCVPI+   + +FDPF VPTL  L  ++D Y+ EH  D E A GV  D++KT LK   E  +K  + P+   +++  R  RE++AA++GDF
Sbjct:   43 SSPADASVVFSPELLGMYYARLFPYQLLHSWLSYDQSTVIPANGSSINSAGTPSSSTTFPRREFSMTIEPAPGNEVYIRYQSFLSQAELTNAIMKRRPTKIDIGAVFNYPPKDNKSLPTGKLQTQERELVFDIDLTDYDGVRNCGCSGAKICPKCWTFMEMAVQVMDEGLKSDFGFEHLAWFYSGRRGVHCWVCDEGARKLSNEARSSVATYFEVNLGSEKN----KNFHLSSPLHPMLSRAYSILEPHFITSVLPEDGHKLLATRADWTKLLLTLPKAANPVASKLEEKWASAKDDTTPEEKWEELKAALMAFIGK---------GGNAKVPKNLSNTDRIRIEHWPIETVFKYTYPRLDINVSKMQNHLLKSPFCVHPKTGRVCVPIEVENVANFDPFTVPTLAQLMKELDEYEEEHKNDGEGASGVEFDWQKTSLKKPFEYFQKKFLTPLMNDVRREQRDAREKNAAVVGDF 504          
The following BLAST results are available for this feature:
BLAST of NO03G04980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853872.12.200e-19172.25DNA primase small subunit [Nannochloropsis gaditan... [more]
EWM29932.11.100e-19069.15dna primase small subunit [Nannochloropsis gaditan... [more]
CBJ27863.13.600e-12549.27conserved unknown protein [Ectocarpus siliculosus][more]
XP_002908635.11.000e-11148.45DNA primase small subunit, putative [Phytophthora ... [more]
XP_008905361.13.300e-11048.01hypothetical protein PPTG_11896 [Phytophthora para... [more]
XP_012206785.13.300e-11047.89DNA primase [Saprolegnia parasitica CBS 223.65] >K... [more]
ETL93689.15.600e-11047.79hypothetical protein L917_08216 [Phytophthora para... [more]
ETM46927.15.600e-11047.79hypothetical protein L914_08273 [Phytophthora para... [more]
ETK87130.19.600e-11048.01hypothetical protein L915_08382 [Phytophthora para... [more]
XP_002286900.12.800e-10947.16predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005384NSK005384Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04980.1NO03G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522264gene_1705Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100351g4gene708Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04980.1NO03G04980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04980 ID=NO03G04980|Name=NO03G04980|organism=Nannochloropsis oceanica|type=gene|length=2286bp
AGGCACAGGACGCCGCTGTAGCAACGATTTCCTCCTTTGGCTTTCTGCGC
CTGAGTGCTTGCCCTGTTCCATACAACAAAGACAAGCTCCTAGCATGAGC
ACAGgtaggcaacggcagtacgatacgcgacaccacgtgcattttaccct
tttctttgatggtcctaggaagggcacctttggtttgcccttgcgcgcat
gtatcttttcctttttctttttcccgccttctccacttcccttccgccgt
gccgcacatagaggctcggacgcgttcgcaaatgatgcagcatggccatc
cttttgtttttttggtgagcgtggaattatgccaggccctttttcttcgc
ctggattgtagtctgctctcttttgtcccacccaccaccagcatcaatca
tggccaggccccactagcccagccctccccctccatctcccatgcacata
cacatttctatctcctcctccagaatcacgcctctacctattgtagtcat
gatccttctgcccatacttattccttcgtacctcaaccgactatgaacac
agCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGGACA
GCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAATTC
AGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCAAGC
CATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTGGGC
ATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATCAAC
GATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCGGAAATGGA
GGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCGTGT
TTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGgtaggttgc
aggttggggcatagaggggggtgggggagggagggggaaagtatactgcc
agtaacactaccgacacccattgcatctactctatggtgctcatatttcg
tatgtacttattttctcccttccttttcctccctctcttttgctagGCCT
TCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGACTAC
GACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATGCTG
GATTTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTGAGG
ACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTG
CATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGGGCG
GAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACAACA
GTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCTTTT
GCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGG
GGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGCTTC
TAGACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAGATG
AGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCAGTT
GCATGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAG
GAGGATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCACTT
GAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGA
CGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGG
TGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATT
GATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCA
GATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTG
TGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAG
AAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGAT
GGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAGAGGGAGAGGG
AGGGGTAGGGGGTGATTAAGGTGCTGAGACGATGCTCACGCAGTAAGGAT
TGGAAAAAGGTTGAAACGAAAGGCAGGCAGCAGGACAACCACACGCGAAA
AAGTAAACTAGCAGCAAGGAGACGCCTTCAGTCTCG
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protein sequence of NO03G04980.1

>NO03G04980.1-protein ID=NO03G04980.1-protein|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MSTASSSRRTSTSGTKDKDSMDVAGPATPAVNDQEFSPELLRFFYTRLFP
YQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAA
EMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTD
YDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRG
VHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPS
FARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRRE
MRRLTTAEERWREIKTQLHAKTGNSGGGARRQSRGGSLGGGGRGGGGMYA
LELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVA
IDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELL
EKCVVEPMALVMKKRARMERERHAAMIGDF*
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Synonyms
Publications