NO03G04980.1, NO03G04980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04980.1
Unique NameNO03G04980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1683
Alignment locationchr3:1415114..1417399 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1415114..1417399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04980.1 vs.
Match: XP_005853872.1 (DNA primase small subunit [Nannochloropsis gaditana CCMP526]; EKU22493.1 DNA primase small subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 760.0 bits (1961), Expect = 4.500e-216
Identity = 363/455 (79.78%), Postives = 408/455 (89.67%), Query Frame = 0
Query:   27 ATPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLH-AKTGNSGGGARRQSRGGSLGGGGRGGGGMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
            A  A+NDQEFSPELLRFFY RLFPYQ MFKWLSYGNDPD++  H+VRD+F+ REFSFTINDDIYIRYQSFRDA+EME+AIQKKQPHKIDIGAVFT+PPKDHHTVKAEAFKPVERELIFDIDMTDYDDIR+CCTGAKICPKCW+FMTMAVKVVDTALREDFGF+ +LWVYSGRRGVHCWVCD + R L+NDGRSAVVEYLSLPRGNE +  KGKN GL+WPLHPSF RAFDILEPMFE GVLGE GQGVLDSENSWDTLLD+LPDEDLA +LRREMRRLT A++RW EIK+Q+  A + ++ G ARRQSR      GGR G G++AL+LWKYEVVF+YCYPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP  +D+FDPF+VPTLKALAAQIDAYDA++AQ+  A+ + DYKKTELK AVELLE+CVV+P+AL  K+R ++ERE+ AAMIGDF
Sbjct:   14 AAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKS--KGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSR------GGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 460          
The following BLAST results are available for this feature:
BLAST of NO03G04980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853872.14.500e-21679.78DNA primase small subunit [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04980NO03G04980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04980.1NO03G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04980.1.cds1NO03G04980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04980.1.cds2NO03G04980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04980.1.cds3NO03G04980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04980.1 ID=NO03G04980.1|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
AGGCACAGGACGCCGCTGTAGCAACGATTTCCTCCTTTGGCTTTCTGCGC
CTGAGTGCTTGCCCTGTTCCATACAACAAAGACAAGCTCCTAGCATGAGC
ACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGGA
CAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAAT
TCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCAA
GCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTGG
GCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATCA
ACGATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCGGAAATG
GAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCGT
GTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGGCCTTCA
AGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGACTACGAC
GACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATGCTGGAT
TTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTGAGGACT
TTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTGCAT
TGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGGGCGGAG
TGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACAACAGTG
GGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCTTTTGCT
CGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGGGGA
GGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGCTTCTAG
ACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAGATGAGA
CGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCAGTTGCA
TGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAGGAG
GATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCACTTGAG
TTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGACGT
GAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGGTGC
ACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATTGAT
GACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCAGAT
TGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTGTGT
CTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAGAAG
TGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGATGGA
GAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAGAGGGAGAGGGAGG
GGTAGGGGGTGATTAAGGTGCTGAGACGATGCTCACGCAGTAAGGATTGG
AAAAAGGTTGAAACGAAAGGCAGGCAGCAGGACAACCACACGCGAAAAAG
TAAACTAGCAGCAAGGAGACGCCTTCAGTCTCG
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protein sequence of NO03G04980.1

>NO03G04980.1-protein ID=NO03G04980.1-protein|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MSTASSSRRTSTSGTKDKDSMDVAGPATPAVNDQEFSPELLRFFYTRLFP
YQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAA
EMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTD
YDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRG
VHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPS
FARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRRE
MRRLTTAEERWREIKTQLHAKTGNSGGGARRQSRGGSLGGGGRGGGGMYA
LELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVA
IDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELL
EKCVVEPMALVMKKRARMERERHAAMIGDF*
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mRNA from alignment at chr3:1415114..1417399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04980.1 ID=NO03G04980.1|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at chr3:1415114..1417399- (Nannochloropsis oceanica)
AGGCACAGGACGCCGCTGTAGCAACGATTTCCTCCTTTGGCTTTCTGCGC CTGAGTGCTTGCCCTGTTCCATACAACAAAGACAAGCTCCTAGCATGAGC ACAGGTAGGCAACGGCAGTACGATACGCGACACCACGTGCATTTTACCCT TTTCTTTGATGGTCCTAGGAAGGGCACCTTTGGTTTGCCCTTGCGCGCAT GTATCTTTTCCTTTTTCTTTTTCCCGCCTTCTCCACTTCCCTTCCGCCGT GCCGCACATAGAGGCTCGGACGCGTTCGCAAATGATGCAGCATGGCCATC CTTTTGTTTTTTTGGTGAGCGTGGAATTATGCCAGGCCCTTTTTCTTCGC CTGGATTGTAGTCTGCTCTCTTTTGTCCCACCCACCACCAGCATCAATCA TGGCCAGGCCCCACTAGCCCAGCCCTCCCCCTCCATCTCCCATGCACATA CACATTTCTATCTCCTCCTCCAGAATCACGCCTCTACCTATTGTAGTCAT GATCCTTCTGCCCATACTTATTCCTTCGTACCTCAACCGACTATGAACAC AGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGGACA GCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAATTC AGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCAAGC CATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTGGGC ATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATCAAC GATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCGGAAATGGA GGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCGTGT TTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGGTAGGTTGC AGGTTGGGGCATAGAGGGGGGTGGGGGAGGGAGGGGGAAAGTATACTGCC AGTAACACTACCGACACCCATTGCATCTACTCTATGGTGCTCATATTTCG TATGTACTTATTTTCTCCCTTCCTTTTCCTCCCTCTCTTTTGCTAGGCCT TCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGACTAC GACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATGCTG GATTTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTGAGG ACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTG CATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGGGCG GAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACAACA GTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCTTTT GCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGG GGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGCTTC TAGACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAGATG AGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCAGTT GCATGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAG GAGGATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCACTT GAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGA CGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGG TGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATT GATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCA GATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTG TGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAG AAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGAT GGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAGAGGGAGAGGG AGGGGTAGGGGGTGATTAAGGTGCTGAGACGATGCTCACGCAGTAAGGAT TGGAAAAAGGTTGAAACGAAAGGCAGGCAGCAGGACAACCACACGCGAAA AAGTAAACTAGCAGCAAGGAGACGCCTTCAGTCTCG
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Coding sequence (CDS) from alignment at chr3:1415114..1417399-

>NO03G04980.1 ID=NO03G04980.1|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at chr3:1415114..1417399- (Nannochloropsis oceanica)
ATGAGCACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGA
CAAGGACAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACC
AGGAATTCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCG
TATCAAGCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGA
GGGTGGGCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTA
CCATCAACGATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCG
GAAATGGAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGG
GGCCGTGTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGG
CCTTCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGAC
TACGACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATG
CTGGATTTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTG
AGGACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGC
GTGCATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGG
GCGGAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACA
ACAGTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCT
TTTGCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTT
AGGGGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGC
TTCTAGACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAG
ATGAGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCA
GTTGCATGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTC
GAGGAGGATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCA
CTTGAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCT
GGACGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTG
CGGTGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCA
ATTGATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGC
TCAGATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGG
GTGTGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTG
GAGAAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAG
GATGGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAG
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Synonyms
Publications