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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1415114..1417399 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04980.1 vs.
Match: XP_005853872.1 (DNA primase small subunit [Nannochloropsis gaditana CCMP526]; EKU22493.1 DNA primase small subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 760.0 bits (1961), Expect = 4.500e-216 Identity = 363/455 (79.78%), Postives = 408/455 (89.67%), Query Frame = 0
Query: 27 ATPAVNDQEFSPELLRFFYTRLFPYQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAAEMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRGVHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPSFARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRREMRRLTTAEERWREIKTQLH-AKTGNSGGGARRQSRGGSLGGGGRGGGGMYALELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEPMALVMKKRARMERERHAAMIGDF 481
A A+NDQEFSPELLRFFY RLFPYQ MFKWLSYGNDPD++ H+VRD+F+ REFSFTINDDIYIRYQSFRDA+EME+AIQKKQPHKIDIGAVFT+PPKDHHTVKAEAFKPVERELIFDIDMTDYDDIR+CCTGAKICPKCW+FMTMAVKVVDTALREDFGF+ +LWVYSGRRGVHCWVCD + R L+NDGRSAVVEYLSLPRGNE + KGKN GL+WPLHPSF RAFDILEPMFE GVLGE GQGVLDSENSWDTLLD+LPDEDLA +LRREMRRLT A++RW EIK+Q+ A + ++ G ARRQSR GGR G G++AL+LWKYEVVF+YCYPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP +D+FDPF+VPTLKALAAQIDAYDA++AQ+ A+ + DYKKTELK AVELLE+CVV+P+AL K+R ++ERE+ AAMIGDF
Sbjct: 14 AAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKS--KGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSR------GGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 460
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04980.1 ID=NO03G04980.1|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp AGGCACAGGACGCCGCTGTAGCAACGATTTCCTCCTTTGGCTTTCTGCGC CTGAGTGCTTGCCCTGTTCCATACAACAAAGACAAGCTCCTAGCATGAGC ACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGGA CAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAAT TCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCAA GCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTGG GCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATCA ACGATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCGGAAATG GAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCGT GTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGGCCTTCA AGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGACTACGAC GACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATGCTGGAT TTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTGAGGACT TTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTGCAT TGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGGGCGGAG TGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACAACAGTG GGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCTTTTGCT CGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGGGGA GGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGCTTCTAG ACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAGATGAGA CGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCAGTTGCA TGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAGGAG GATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCACTTGAG TTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGACGT GAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGGTGC ACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATTGAT GACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCAGAT TGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTGTGT CTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAGAAG TGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGATGGA GAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAGAGGGAGAGGGAGG GGTAGGGGGTGATTAAGGTGCTGAGACGATGCTCACGCAGTAAGGATTGG AAAAAGGTTGAAACGAAAGGCAGGCAGCAGGACAACCACACGCGAAAAAG TAAACTAGCAGCAAGGAGACGCCTTCAGTCTCG back to topprotein sequence of NO03G04980.1 >NO03G04980.1-protein ID=NO03G04980.1-protein|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp MSTASSSRRTSTSGTKDKDSMDVAGPATPAVNDQEFSPELLRFFYTRLFP YQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAA EMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKAEAFKPVERELIFDIDMTD YDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRG VHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPS FARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRRE MRRLTTAEERWREIKTQLHAKTGNSGGGARRQSRGGSLGGGGRGGGGMYA LELWKYEVVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVA IDDFDPFKVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELL EKCVVEPMALVMKKRARMERERHAAMIGDF* back to topmRNA from alignment at chr3:1415114..1417399- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04980.1 ID=NO03G04980.1|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at chr3:1415114..1417399- (Nannochloropsis oceanica) AGGCACAGGACGCCGCTGTAGCAACGATTTCCTCCTTTGGCTTTCTGCGC
CTGAGTGCTTGCCCTGTTCCATACAACAAAGACAAGCTCCTAGCATGAGC
ACAGGTAGGCAACGGCAGTACGATACGCGACACCACGTGCATTTTACCCT
TTTCTTTGATGGTCCTAGGAAGGGCACCTTTGGTTTGCCCTTGCGCGCAT
GTATCTTTTCCTTTTTCTTTTTCCCGCCTTCTCCACTTCCCTTCCGCCGT
GCCGCACATAGAGGCTCGGACGCGTTCGCAAATGATGCAGCATGGCCATC
CTTTTGTTTTTTTGGTGAGCGTGGAATTATGCCAGGCCCTTTTTCTTCGC
CTGGATTGTAGTCTGCTCTCTTTTGTCCCACCCACCACCAGCATCAATCA
TGGCCAGGCCCCACTAGCCCAGCCCTCCCCCTCCATCTCCCATGCACATA
CACATTTCTATCTCCTCCTCCAGAATCACGCCTCTACCTATTGTAGTCAT
GATCCTTCTGCCCATACTTATTCCTTCGTACCTCAACCGACTATGAACAC
AGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGGACA
GCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAATTC
AGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCAAGC
CATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTGGGC
ATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATCAAC
GATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCGGAAATGGA
GGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCGTGT
TTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGGTAGGTTGC
AGGTTGGGGCATAGAGGGGGGTGGGGGAGGGAGGGGGAAAGTATACTGCC
AGTAACACTACCGACACCCATTGCATCTACTCTATGGTGCTCATATTTCG
TATGTACTTATTTTCTCCCTTCCTTTTCCTCCCTCTCTTTTGCTAGGCCT
TCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGACTAC
GACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATGCTG
GATTTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTGAGG
ACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTG
CATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGGGCG
GAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACAACA
GTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCTTTT
GCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGG
GGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGCTTC
TAGACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAGATG
AGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCAGTT
GCATGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAG
GAGGATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCACTT
GAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGA
CGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGG
TGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATT
GATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCA
GATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTG
TGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAG
AAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGAT
GGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAGAGGGAGAGGG
AGGGGTAGGGGGTGATTAAGGTGCTGAGACGATGCTCACGCAGTAAGGAT
TGGAAAAAGGTTGAAACGAAAGGCAGGCAGCAGGACAACCACACGCGAAA
AAGTAAACTAGCAGCAAGGAGACGCCTTCAGTCTCG back to topCoding sequence (CDS) from alignment at chr3:1415114..1417399- >NO03G04980.1 ID=NO03G04980.1|Name=NO03G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at chr3:1415114..1417399- (Nannochloropsis oceanica) ATGAGCACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGA CAAGGACAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACC AGGAATTCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCG TATCAAGCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGA GGGTGGGCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTA CCATCAACGATGACATCTACATCCGTTACCAATCTTTCCGGGATGCCGCG GAAATGGAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGG GGCCGTGTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGGCCGAGG CCTTCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGAC TACGACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATG CTGGATTTTTATGACCATGGCCGTTAAAGTTGTCGATACGGCCCTCCGTG AGGACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGC GTGCATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGG GCGGAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACA ACAGTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCT TTTGCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTT AGGGGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGC TTCTAGACAGTCTGCCGGATGAAGACCTGGCACTAAAGCTGAGGAGGGAG ATGAGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCA GTTGCATGCGAAGACTGGTAATAGTGGAGGTGGGGCCAGGCGACAAAGTC GAGGAGGATCGCTTGGTGGGGGAGGGAGGGGGGGAGGGGGGATGTATGCA CTTGAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCT GGACGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTG CGGTGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCA ATTGATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGC TCAGATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGG GTGTGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTG GAGAAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAG GATGGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAG back to top
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