NO03G04970, NO03G04970 (gene) Nannochloropsis oceanica

Overview
NameNO03G04970
Unique NameNO03G04970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr3:1413915..1415107 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1413915..1415107 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04970 vs. NCBI_GenBank
Match: EWM29933.1 (hypothetical protein Naga_100351g3 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 9.600e-26
Identity = 94/233 (40.34%), Postives = 122/233 (52.36%), Query Frame = 0 
Query:   17 SGVGKAPLKMGMTGVAATIGSLDAYVVPMTRYVAPPXXXXXXXXXXXXXXXXXXXXPTYRSTNTAKALPRSSGSQKSKPAAVAAAV------ITEAPTP----SAPTSATEA--LSTDWLVERLHGGHGRVDAQASWDARRTEKLTVTDVALFNKRRILGQQAKARQPGWRVQGNKRVFVAYTGAGMQVAEGAEAFKLSVAFGKKKTKR--------VGAGDGEAGKPCVSKG 230
            SG  KA L+    GVA+  G++DA++VP  R                                         GS+ S+P++    V      I  +  P    S   S+T A  +S DWLV RL+ G G+ DAQASWDAR  E+LT TDV L NKRR +G Q+K ++ GWRVQG+ +VFVAYTGAG+QVAEGAEAF+LS+A+GKK+ KR          A DG  G     +G
Sbjct:   21 SGPTKAKLRK-QDGVASNKGAIDAFLVPRPR----------------------------------------DGSKTSRPSSPVQCVSPTLSPIDGSTVPDNLNSIDNSSTRASQVSPDWLVRRLNDGQGQADAQASWDARSKERLTATDVTLINKRRAMGCQSK-KKSGWRVQGDTKVFVAYTGAGVQVAEGAEAFRLSMAYGKKRGKRKKDGKDVNEKAADGSRGHKASQRG 211
The following BLAST results are available for this feature:
BLAST of NO03G04970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29933.19.600e-2640.34hypothetical protein Naga_100351g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005385NSK005385Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04970.1NO03G04970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562441gene_1704Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100351g3gene709Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04970.1NO03G04970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04970 ID=NO03G04970|Name=NO03G04970|organism=Nannochloropsis oceanica|type=gene|length=1193bp
CCCCACAGCGCCGTCCCGGAGGCTCGAGCACCCCCTATCGACATGCACGT
TGCCTCTCTGTATCATACTCTGCAGACATCCTATGAGGCGCACACGTTAT
TGAGGTCTAGATCGCCTATAGAAACGTGTAATATTCTAAGTCGCACTGCT
TGCAGCACACAGCAGCCTGCTGGCCGCTGGCATCATCATCGCCGTGATGA
TCCTATCCCTTGATCCTTTTTATTTTTGAACACCCTCTACCCTGACCTGA
CACGTAGACACATACTATCATCCACCCACGCACAACCTCACACGCACACA
CACAGGCAGCTTTCCCGTCCTGTCCAACCTGGAGTGTCCCGACGTTATCG
AATCGCCGACAATCGCGCCATGGTGAGGCACGCCATCCGTCGGGAGAAAA
ACCCCGTGCCCCGCCCCAGCGGCGTTGGCAAAGCCCCACTAAAGATGGGA
ATGACTGGGGTTGCCGCTACAATAGGTTCTCTTGATGCTTATGTTGTGCC
GATGACGCGATATGTCGCCCCGCCTCCGCTGCCGCCGGAGCCCCAAAAGC
CCAAGCCTAAGGCATCAGTCGCAGCCGCAAGCAAACCAACGTACCGCAGC
ACCAACACCGCTAAAGCCTTGCCGCGTTCCTCCGGGTCGCAAAAGTCGAA
GCCAGCAGCAGTTGCAGCCGCAGTAATCACCGAGGCTCCCACACCCTCGG
CTCCCACCTCTGCTACCGAAGCCTTGTCCACAGACTGGCTCGTGGAACGA
CTACACGGTGGGCATGGTCGAGTGGATGCTCAGGCATCGTGGGATGCACG
TCGCACAGAAAAACTGACAGTGACGGACGTGGCGTTGTTCAACAAGCGGC
GCATTCTGGGACAGCAGGCCAAAGCGCGTCAGCCCGGGTGGCGTGTACAG
GGGAATAAGCGAGTGTTTGTGGCGTATACGGGGGCGGGCATGCAGGTGGC
GGAGGGGGCAGAGGCATTTAAATTGAGTGTGGCCTTTGGGAAGAAAAAGA
CGAAACGAGTGGGTGCTGGAGATGGAGAAGCGGGGAAGCCATGTGTGAGC
AAGGGGAAGAAGAAGGGTAAAAGCGACACGTACAGCTAGAGTCAGCAGGT
AATGCAAGTGTATGCATGGACGTGAGCATAGATAATTATTTGTACATTTA
TACAGCGACAACGTGAAGAAACAATGTATGCCCCGAGACTGAT
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protein sequence of NO03G04970.1

>NO03G04970.1-protein ID=NO03G04970.1-protein|Name=NO03G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MVRHAIRREKNPVPRPSGVGKAPLKMGMTGVAATIGSLDAYVVPMTRYVA
PPPLPPEPQKPKPKASVAAASKPTYRSTNTAKALPRSSGSQKSKPAAVAA
AVITEAPTPSAPTSATEALSTDWLVERLHGGHGRVDAQASWDARRTEKLT
VTDVALFNKRRILGQQAKARQPGWRVQGNKRVFVAYTGAGMQVAEGAEAF
KLSVAFGKKKTKRVGAGDGEAGKPCVSKGKKKGKSDTYS*
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Synonyms
Publications