NO03G04970.1, NO03G04970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04970.1
Unique NameNO03G04970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr3:1413915..1415107 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1413915..1415107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04970.1 vs.
Match: EWM29933.1 (hypothetical protein Naga_100351g3 [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 9.000e-24
Identity = 88/193 (45.60%), Postives = 113/193 (58.55%), Query Frame = 0 
Query:   58 PQKPKPKASVAAASKPTYRSTNTAKALPRS-SGSQKSKPAAVAAAV------ITEAPTP----SAPTSATEA--LSTDWLVERLHGGHGRVDAQASWDARRTEKLTVTDVALFNKRRILGQQAKARQPGWRVQGNKRVFVAYTGAGMQVAEGAEAFKLSVAFGKKKTKR--------VGAGDGEAGKPCVSKG 230
            P K K +     AS    +    A  +PR   GS+ S+P++    V      I  +  P    S   S+T A  +S DWLV RL+ G G+ DAQASWDAR  E+LT TDV L NKRR +G Q+K ++ GWRVQG+ +VFVAYTGAG+QVAEGAEAF+LS+A+GKK+ KR          A DG  G     +G
Sbjct:   23 PTKAKLRKQDGVASN---KGAIDAFLVPRPRDGSKTSRPSSPVQCVSPTLSPIDGSTVPDNLNSIDNSSTRASQVSPDWLVRRLNDGQGQADAQASWDARSKERLTATDVTLINKRRAMGCQSK-KKSGWRVQGDTKVFVAYTGAGVQVAEGAEAFRLSMAYGKKRGKRKKDGKDVNEKAADGSRGHKASQRG 211
The following BLAST results are available for this feature:
BLAST of NO03G04970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29933.19.000e-2445.60hypothetical protein Naga_100351g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04970NO03G04970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04970.1NO03G04970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04970.1.cds1NO03G04970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04970.1 ID=NO03G04970.1|Name=NO03G04970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
CCCCACAGCGCCGTCCCGGAGGCTCGAGCACCCCCTATCGACATGCACGT
TGCCTCTCTGTATCATACTCTGCAGACATCCTATGAGGCGCACACGTTAT
TGAGGTCTAGATCGCCTATAGAAACGTGTAATATTCTAAGTCGCACTGCT
TGCAGCACACAGCAGCCTGCTGGCCGCTGGCATCATCATCGCCGTGATGA
TCCTATCCCTTGATCCTTTTTATTTTTGAACACCCTCTACCCTGACCTGA
CACGTAGACACATACTATCATCCACCCACGCACAACCTCACACGCACACA
CACAGGCAGCTTTCCCGTCCTGTCCAACCTGGAGTGTCCCGACGTTATCG
AATCGCCGACAATCGCGCCATGGTGAGGCACGCCATCCGTCGGGAGAAAA
ACCCCGTGCCCCGCCCCAGCGGCGTTGGCAAAGCCCCACTAAAGATGGGA
ATGACTGGGGTTGCCGCTACAATAGGTTCTCTTGATGCTTATGTTGTGCC
GATGACGCGATATGTCGCCCCGCCTCCGCTGCCGCCGGAGCCCCAAAAGC
CCAAGCCTAAGGCATCAGTCGCAGCCGCAAGCAAACCAACGTACCGCAGC
ACCAACACCGCTAAAGCCTTGCCGCGTTCCTCCGGGTCGCAAAAGTCGAA
GCCAGCAGCAGTTGCAGCCGCAGTAATCACCGAGGCTCCCACACCCTCGG
CTCCCACCTCTGCTACCGAAGCCTTGTCCACAGACTGGCTCGTGGAACGA
CTACACGGTGGGCATGGTCGAGTGGATGCTCAGGCATCGTGGGATGCACG
TCGCACAGAAAAACTGACAGTGACGGACGTGGCGTTGTTCAACAAGCGGC
GCATTCTGGGACAGCAGGCCAAAGCGCGTCAGCCCGGGTGGCGTGTACAG
GGGAATAAGCGAGTGTTTGTGGCGTATACGGGGGCGGGCATGCAGGTGGC
GGAGGGGGCAGAGGCATTTAAATTGAGTGTGGCCTTTGGGAAGAAAAAGA
CGAAACGAGTGGGTGCTGGAGATGGAGAAGCGGGGAAGCCATGTGTGAGC
AAGGGGAAGAAGAAGGGTAAAAGCGACACGTACAGCTAGAGTCAGCAGGT
AATGCAAGTGTATGCATGGACGTGAGCATAGATAATTATTTGTACATTTA
TACAGCGACAACGTGAAGAAACAATGTATGCCCCGAGACTGAT
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protein sequence of NO03G04970.1

>NO03G04970.1-protein ID=NO03G04970.1-protein|Name=NO03G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MVRHAIRREKNPVPRPSGVGKAPLKMGMTGVAATIGSLDAYVVPMTRYVA
PPPLPPEPQKPKPKASVAAASKPTYRSTNTAKALPRSSGSQKSKPAAVAA
AVITEAPTPSAPTSATEALSTDWLVERLHGGHGRVDAQASWDARRTEKLT
VTDVALFNKRRILGQQAKARQPGWRVQGNKRVFVAYTGAGMQVAEGAEAF
KLSVAFGKKKTKRVGAGDGEAGKPCVSKGKKKGKSDTYS*
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mRNA from alignment at chr3:1413915..1415107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04970.1 ID=NO03G04970.1|Name=NO03G04970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp|location=Sequence derived from alignment at chr3:1413915..1415107+ (Nannochloropsis oceanica)
CCCCACAGCGCCGTCCCGGAGGCTCGAGCACCCCCTATCGACATGCACGT
TGCCTCTCTGTATCATACTCTGCAGACATCCTATGAGGCGCACACGTTAT
TGAGGTCTAGATCGCCTATAGAAACGTGTAATATTCTAAGTCGCACTGCT
TGCAGCACACAGCAGCCTGCTGGCCGCTGGCATCATCATCGCCGTGATGA
TCCTATCCCTTGATCCTTTTTATTTTTGAACACCCTCTACCCTGACCTGA
CACGTAGACACATACTATCATCCACCCACGCACAACCTCACACGCACACA
CACAGGCAGCTTTCCCGTCCTGTCCAACCTGGAGTGTCCCGACGTTATCG
AATCGCCGACAATCGCGCCATGGTGAGGCACGCCATCCGTCGGGAGAAAA
ACCCCGTGCCCCGCCCCAGCGGCGTTGGCAAAGCCCCACTAAAGATGGGA
ATGACTGGGGTTGCCGCTACAATAGGTTCTCTTGATGCTTATGTTGTGCC
GATGACGCGATATGTCGCCCCGCCTCCGCTGCCGCCGGAGCCCCAAAAGC
CCAAGCCTAAGGCATCAGTCGCAGCCGCAAGCAAACCAACGTACCGCAGC
ACCAACACCGCTAAAGCCTTGCCGCGTTCCTCCGGGTCGCAAAAGTCGAA
GCCAGCAGCAGTTGCAGCCGCAGTAATCACCGAGGCTCCCACACCCTCGG
CTCCCACCTCTGCTACCGAAGCCTTGTCCACAGACTGGCTCGTGGAACGA
CTACACGGTGGGCATGGTCGAGTGGATGCTCAGGCATCGTGGGATGCACG
TCGCACAGAAAAACTGACAGTGACGGACGTGGCGTTGTTCAACAAGCGGC
GCATTCTGGGACAGCAGGCCAAAGCGCGTCAGCCCGGGTGGCGTGTACAG
GGGAATAAGCGAGTGTTTGTGGCGTATACGGGGGCGGGCATGCAGGTGGC
GGAGGGGGCAGAGGCATTTAAATTGAGTGTGGCCTTTGGGAAGAAAAAGA
CGAAACGAGTGGGTGCTGGAGATGGAGAAGCGGGGAAGCCATGTGTGAGC
AAGGGGAAGAAGAAGGGTAAAAGCGACACGTACAGCTAGAGTCAGCAGGT
AATGCAAGTGTATGCATGGACGTGAGCATAGATAATTATTTGTACATTTA
TACAGCGACAACGTGAAGAAACAATGTATGCCCCGAGACTGAT
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Coding sequence (CDS) from alignment at chr3:1413915..1415107+

>NO03G04970.1 ID=NO03G04970.1|Name=NO03G04970.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr3:1413915..1415107+ (Nannochloropsis oceanica)
ATGGTGAGGCACGCCATCCGTCGGGAGAAAAACCCCGTGCCCCGCCCCAG
CGGCGTTGGCAAAGCCCCACTAAAGATGGGAATGACTGGGGTTGCCGCTA
CAATAGGTTCTCTTGATGCTTATGTTGTGCCGATGACGCGATATGTCGCC
CCGCCTCCGCTGCCGCCGGAGCCCCAAAAGCCCAAGCCTAAGGCATCAGT
CGCAGCCGCAAGCAAACCAACGTACCGCAGCACCAACACCGCTAAAGCCT
TGCCGCGTTCCTCCGGGTCGCAAAAGTCGAAGCCAGCAGCAGTTGCAGCC
GCAGTAATCACCGAGGCTCCCACACCCTCGGCTCCCACCTCTGCTACCGA
AGCCTTGTCCACAGACTGGCTCGTGGAACGACTACACGGTGGGCATGGTC
GAGTGGATGCTCAGGCATCGTGGGATGCACGTCGCACAGAAAAACTGACA
GTGACGGACGTGGCGTTGTTCAACAAGCGGCGCATTCTGGGACAGCAGGC
CAAAGCGCGTCAGCCCGGGTGGCGTGTACAGGGGAATAAGCGAGTGTTTG
TGGCGTATACGGGGGCGGGCATGCAGGTGGCGGAGGGGGCAGAGGCATTT
AAATTGAGTGTGGCCTTTGGGAAGAAAAAGACGAAACGAGTGGGTGCTGG
AGATGGAGAAGCGGGGAAGCCATGTGTGAGCAAGGGGAAGAAGAAGGGTA
AAAGCGACACGTACAGCTAG
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Synonyms
Publications