NO03G04910, NO03G04910 (gene) Nannochloropsis oceanica

Overview
NameNO03G04910
Unique NameNO03G04910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2567
Alignment locationchr3:1399711..1402277 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1399711..1402277 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
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BLAST of NO03G04910 vs. NCBI_GenBank
Match: EWM29903.1 (hypothetical protein Naga_100035g1 [Nannochloropsis gaditana])

HSP 1 Score: 247.3 bits (630), Expect = 1.300e-61
Identity = 117/146 (80.14%), Postives = 131/146 (89.73%), Query Frame = 0 
Query:  370 KDEVIMLKEYLKQHEQEMPPPSPVKPNPYLISAVVRELGVPGLEEIVKSLAVQLNFDWGRTCRYAFAAYLFGKFGAQGPWKPLLLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVLLTFDEQAYLERLYGE 516
            K+EV+ LKEYLK+HE+E PPP  V+P+P+L+SA+VRELGVPGLEE V SLAVQLNFDW RTCRYAFAAYLF +FGAQG WKPLL  MVPGVF LQL+PFRYGAK  WEM+AVSP +GGFSSALLSAPQQVLLTFDEQAYLERLYG+
Sbjct:    2 KEEVLSLKEYLKKHERESPPPPAVRPDPHLVSALVRELGVPGLEEAVNSLAVQLNFDWARTCRYAFAAYLFARFGAQGVWKPLLYSMVPGVFFLQLRPFRYGAKAVWEMLAVSPWIGGFSSALLSAPQQVLLTFDEQAYLERLYGQ 147
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BLAST of NO03G04910 vs. NCBI_GenBank
Match: CEM17537.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 75.1 bits (183), Expect = 8.600e-10
Identity = 92/361 (25.48%), Postives = 146/361 (40.44%), Query Frame = 0 
Query:  195 IKVLVKTDSGFKDMDQKLDLVLDGSNTTIAEVKQILQKQMSGSPPVRLQRLFYAGRKLQDAEL-VGDVMRQDKEDDEEEEGRIGGRPAVALPIVLDMPPPLPHL----------DYEGMLALKVRFESLDFKQPLFYAANAVGLRYAIQALD--EHLLRGRPTEGEXXXXXXXXXXXXXXXXXXXXXXKDEVIMLKEYLKQHEQEMPPPS---------------PVKPNPY--LISAVVRELGVPGLEEIVKSLAVQLNFD--WGRTCRYAFAAYLFGKFGAQG-----------PWKPLLLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVLLTFDEQAYLERL 513
            ++++V T SG + +D K  + L   +T +  +K  +++   G PP  LQRLF   + L+D ++ + DV+  D   DE         PA    ++LDM PP+             + E   AL     +L +   L+  A+       +   D     L+G  + G                         E  M ++++ + ++  PP S               P  P P      AVV     P   +      VQLN D  W  T R A    +  +FG  G             + L L  VP VFL+Q +P ++ AK+ + ++  S    G +S LL APQQ LLTF++  ++ERL
Sbjct:   54 VRLVVTTASGSRYLDHKQLITLSPHDTLVRSLKAAIEQSYPGKPPATLQRLFVGSQALKDDDMDLADVI-DDLSADE---------PAT---VLLDMVPPVDQTQGKMVVSKMNEEEKRAALSAHLAALQYYAALWRRASGADSGEDVSDTDGLGDELKGDESSGVMLIARFRDTYRAL-----------EEAMEQQHMTKQKKARPPTSPEGSQQNEEGESTDHPTAPPPLQAFPEAVVHYPRRPRSLQGRLHRFVQLNLDIHWASTIRLAALLLVLWRFGPSGGSSSGSTPSEEQKRRLFLMCVPLVFLVQSRPVKFLAKLLFNLIPPSSYWDGVAS-LLPAPQQELLTFNQDKFVERL 389
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BLAST of NO03G04910 vs. NCBI_GenBank
Match: XP_002297080.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86808.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 69.7 bits (169), Expect = 3.600e-8
Identity = 92/387 (23.77%), Postives = 148/387 (38.24%), Query Frame = 0 
Query:  183 QQRSPSPAPPDRIKVLVKTDSGFKDMDQKLDLVLDGSNTTIAEVKQILQKQMSGSPPVRLQRLFYAGRKLQDAELVGDVMRQ------DKEDDEEEEGRIGGRPAVALPIVLDMPPPLPHLDYEGMLALKVRFESLDFKQPL-FYAANAVGLRYAIQALDEH------LLRGRPTEGEXXXXXXXXXXXXXXXXXXXXXXKDEVIML--KEYLKQHEQEMPPPSPVKPNPYLISAVVRE------LGVPGLEE--------------------------------IVKSLAVQLNFDWGRTCRYAFAAYLFGKFGAQGPW-KPLLLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVLLTFDEQAYLERLYGE 516
            Q+ S S   P  +K+ +KT+     +DQ L+        T+A +KQ + K M G PP     L + GR L D ELV D++                   IG    +AL + LD+ PP   +D +  L  K + E +  K+ +  +  N  G+ Y ++  +        LL     EGE                      +++ + +  K  L Q + E    + V+       A V++      LG  G E+                                I ++L   +N +W  T R +     FG FG +  + +  LL   P  FL+Q +P +   K  +  M   P   G   +LL APQQ +++ D    ++ LYGE
Sbjct:   98 QEASVSSGGP--VKLSIKTNIQSAILDQHLEFTA-SQKRTVASLKQAISKTMRGRPPQSTLILKHHGRSLPDDELVSDILADYDXXXXXXXXXXXXXXXIGEEDMIALKLTLDVIPP---VDNKFGLEFKEKAEKMSTKELMEAWCLNMAGMVYGLEVGEREMDYYHGLLLNDGGEGEGGVGEEVGEDGGTTTAVKNDYTQNQSLNIRKKAALLQKQIESSLSTEVQQLMEEEDARVKDYFNRGSLGGEGGEQQQSLVYGLQPQGALSQRSGRKGKTLKGGATMNIKRALQRNMNVNWADTTRNSLLFLFFGYFGGRNSFSRTFLLLSSPLCFLIQTRPVKVALKQVFYTMGEPP---GILLSLLPAPQQAIMSLDYGGVMKGLYGE 475
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BLAST of NO03G04910 vs. NCBI_GenBank
Match: CBJ26759.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.9 bits (159), Expect = 5.200e-7
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = 0 
Query:  412 LEEIVKSLAVQLNFDWGRTCRYAFAAYLFGKFGAQGPWKPL-LLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVLLTFDEQAYLERLYG 515
            L E ++ LA +L+ +W +T +Y    Y+  +FGA G  + L  L ++P + L Q +  R GAK+   ++A  P++      LL AP QV+++ D +AY   LYG
Sbjct:  322 LHEALRPLAHRLDVNWMQTAQYTIFTYICAQFGATGTIRRLATLMLIPMMLLAQTRSARVGAKMVRNLVAEVPVLTQLFLGLLQAPTQVIISVDPKAYTRGLYG 425
The following BLAST results are available for this feature:
BLAST of NO03G04910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM29903.11.300e-6180.14hypothetical protein Naga_100035g1 [Nannochloropsi... [more]
CEM17537.18.600e-1025.48unnamed protein product [Vitrella brassicaformis C... [more]
XP_002297080.13.600e-823.77predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBJ26759.15.200e-734.62conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005392NSK005392Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04910.1NO03G04910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667581gene_1699Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g1gene714Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04910.1NO03G04910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04910 ID=NO03G04910|Name=NO03G04910|organism=Nannochloropsis oceanica|type=gene|length=2567bp
GTGAGGGAAGGAGTACGCAGACACATTCTATGCGGCTCCAGGTTACAAGT
CGCCCTCCCTGAGGGGCTTGTCGGCAGCCATTTGCTTCCGCTGCTTTTTC
CCACTCCCGTCGTCGACCGCCTCAGTGATCGTGGGCATAGTCGTGGGACC
AGGGTTAGGCAAATTGGGGGAGGCAACAGGCTGTGTAGATAAACGAGATT
TATCGATACAGCAGCGGCGCGATTGAAAACGGCTATCTGTGGTTGAGGGA
TGGTTTGGTTCGGTTTTATTTGGTACTACTCTTAATACTGGTGCCGCCTC
TCTCATTCTTCTCACCCTCAACCTTCTATGTATCTGGACACATAGGCTCC
ACGTCGTGGAGAACTGTGAAACAACACATTCGGCCCCTTCCCCTCCTCCC
TTTTTTTCTCAAAAAAGCGACGGATGGGTACTGCACGTTTGCCTCACGCA
AATCAACCCTCTCGGTTGCGTGTGGCTTCCGGACAGCGTGACAGAGTGCT
GTACCCACTCCCTAGCATCTGTCCAATAAGAGACATGATTTCAAGCATAA
AATATTGTAACACTCAAAGTTCCTTCCCTTGATAAAATCCATCTTCAGGC
AAGGAGAGCTGCAACTCAGCCAAGCAGGGTGCTCCTCCTCACCCTCAAGA
CACAATGAGCAGCGACGCTCCAAGCCCACCCCCACTCCCACCACTACGAG
TCAGACGACGCTTAGCTCTGGGCACGGTGGCACTCTTGCTGGGCAGCATG
TTAGCGACGGTAGGCGCAGTAGCAGGTGGAGTAGCAGGCGGAATAGGGAG
GGGGAGGCTAGCAACACGACCAGGAGGTCGGCAGCACCCGCTGCCGTCAT
GGATGCGCATGGGACGAGGACAAGGAGCGTCAAAGATGGCGCATATCCGC
AGTAGTAGAAGTAGAAGTAGTAGAAGTAGTAGTAGTAGCAGCAGCAGCAG
TAATAGGAGTGGGAATTCAGCGCCGTTATCACCCACGGCGCGGAGAAGAA
AAAGGGGGGGAGAAGAAAGAGGAGAACAAGCTGCAGCAGCATCTACAGCA
GAAGCACCAGCACCTTCGGATGATAGAAGGAGGCTTTCGTTTTGCTGGCT
GAAAGCGCAGCGTGGAGGATCTTCCGCGCATGAAGACCCTTTCCAGAACC
TTGCGTTTGGAGATGGCGTCGACGGGGCAGCAGCGGATAAAGCAGCGAGG
CAGCAGCGATCCCCATCACCAGCGCCACCAGATCGCATCAAAGTCTTGGT
AAAGACCGATTCAGGCTTTAAAGATATGGACCAAAAACTGGATTTGGTGC
TCGATGGGAGCAACACAACAATTGCTGAGGTGAAGCAAATCTTGCAGAAG
CAGATGAGTGGCAGTCCACCCGTGAGACTACAGCGTTTATTCTACGCAGG
CCGGAAGCTTCAAGACGCGGAGCTGGTCGGGGATGTAATGCGACAAGACA
AAGAGGACGACGAGGAAGAGGAAGGGAGGATTGGAGGGCGGCCAGCGGTG
GCGTTGCCTATCGTGCTGGACATGCCCCCCCCTCTTCCTCATTTGGATTA
TGAGGGGATGTTGGCGTTGAAGGTTCGATTTGAATCACTTGATTTCAAAC
AGCCCTTATTTTATGCCGCGAATGCCGTGGGGCTTCGATATGCGATCCAG
GCGCTGGATGAGCATTTATTGAGGGGGAGACCGACGGAAGGAGAGGAGGA
CGAGGAGGAGGACGAGGAGGACGAGGAGGAAGGGGAGGAGGAGGCCAGGA
CGAGGAGGATGAAAGACGAGGTGATCATGTTGAAAGAATATCTTAAACAG
CATGAGCAGGAGATGCCCCCTCCTTCTCCAGTCAAACCGAACCCATATTT
GATCAGTGCTGTGGTGCGGGAGTTAGGTGTGCCGGGGTTGGAGGAGATTG
TCAAGTCCCTGGCAGTGCAGTTGAATTTTGACTGGGGACGTACGTGTAGG
TACGCATTTGCTGCTTATTTGTTCGGAAAATTTGGAGCACAAGGGCCGTG
GAAGCCGTTATTGCTGTGCATGGTCCCGGGGGTTTTCTTGCTACAGTTGA
AACCGTTCAGGTATGGAGCAAAAGTGGCGTGGGAGATGATGGCCGTCTCG
CCGCTGGTGGGTGGATTCTCGTCTGCCTTGCTGTCAGCGCCGCAGCAGGT
ATTGTTGACGTTTGATGAGCAGGCATATTTGGAGCGGTTGTATGGTGAGG
GTGGTGGGGTGGTGCCCCCCCCGATGGGACCACCGCCATCGATGTCAGAT
CTTAGGGGGGCGGGAGGAGGGAGGGGAGAGGAAGAGGATGACGAGTACGA
GGACGATGAGGATGAGGGATTGAGCATGGAGACGCAAGCGGGAAATGAAA
GAGAAAAGCTGGGGGAGGAAGAGATGGAGGAGATGATGATGGAGGAGGAA
GAGGAGGAGCAGGAGGAGGAGGAGATGGAAGAACACGAGGATGCAGAGGA
GGATGAAGAATTTGTAGAAGCGGAAGACTATGATAATGGTGGTGATGATG
ATGAAGCAGAAGAAGAAGAAGAAGAATAGGGCGAGTAAAGGATCTGCTCA
CAAAGCACATACACGAC
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protein sequence of NO03G04910.1

>NO03G04910.1-protein ID=NO03G04910.1-protein|Name=NO03G04910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MSSDAPSPPPLPPLRVRRRLALGTVALLLGSMLATVGAVAGGVAGGIGRG
RLATRPGGRQHPLPSWMRMGRGQGASKMAHIRSSRSRSSRSSSSSSSSSN
RSGNSAPLSPTARRRKRGGEERGEQAAAASTAEAPAPSDDRRRLSFCWLK
AQRGGSSAHEDPFQNLAFGDGVDGAAADKAARQQRSPSPAPPDRIKVLVK
TDSGFKDMDQKLDLVLDGSNTTIAEVKQILQKQMSGSPPVRLQRLFYAGR
KLQDAELVGDVMRQDKEDDEEEEGRIGGRPAVALPIVLDMPPPLPHLDYE
GMLALKVRFESLDFKQPLFYAANAVGLRYAIQALDEHLLRGRPTEGEEDE
EEDEEDEEEGEEEARTRRMKDEVIMLKEYLKQHEQEMPPPSPVKPNPYLI
SAVVRELGVPGLEEIVKSLAVQLNFDWGRTCRYAFAAYLFGKFGAQGPWK
PLLLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVL
LTFDEQAYLERLYGEGGGVVPPPMGPPPSMSDLRGAGGGRGEEEDDEYED
DEDEGLSMETQAGNEREKLGEEEMEEMMMEEEEEEQEEEEMEEHEDAEED
EEFVEAEDYDNGGDDDEAEEEEEE*
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Synonyms
Publications