NO03G04910.1, NO03G04910.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G04910.1
Unique Name	NO03G04910.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2567
Alignment location	chr3:1399711..1402277 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1399711..1402277 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G04910.1 vs.
Match: EWM29903.1 (hypothetical protein Naga_100035g1 [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 4.400e-62
Identity = 159/266 (59.77%), Postives = 192/266 (72.18%), Query Frame = 0

Query:  369 MKDEVIMLKEYLKQHEQEMPPPSPVKPNPYLISAVVRELGVPGLEEIVKSLAVQLNFDWGRTCRYAFAAYLFGKFGAQGPWKPLLLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVLLTFDEQAYLERLYGEGGGVVPPPMGP---PPSMSDLRGAGGGRG-EEEDDEYEDDEDEGLSMETQAGNEREKLGEEEMEEMMMEEEEEEQE---EEEMEEHEDA---EEDEEFVEAEDYDNGGDDDEAEEEEEE 625
            MK+EV+ LKEYLK+HE+E PPP  V+P+P+L+SA+VRELGVPGLEE V SLAVQLNFDW RTCRYAFAAYLF +FGAQG WKPLL  MVPGVF LQL+PFRYGAK  WEM+AVSP +GGFSSALLSAPQQVLLTFDEQAYLERLYG+ GG+VPP +GP   PP     R  GG +G  EE    E++E +G     + G E ++L  E +E+   +EE  + E    EE  E  +    EE+E   E ED + G + +E +EE EE
Sbjct:    1 MKEEVLSLKEYLKKHERESPPPPAVRPDPHLVSALVRELGVPGLEEAVNSLAVQLNFDWARTCRYAFAAYLFARFGAQGVWKPLLYSMVPGVFFLQLRPFRYGAKAVWEMLAVSPWIGGFSSALLSAPQQVLLTFDEQAYLERLYGQEGGMVPPAVGPFLSPPEQGQGREQGGEKGLGEEAGGSEEEEQDGEEGVVEEGGEEDEL--ETLEDPFDDEEGGKDEVVGGEEGGEEREGQIREEEEREGEEEDVEEGEEGEEGQEEGEE 264

The following BLAST results are available for this feature:

BLAST of NO03G04910.1 vs.

BLAST of NO03G04910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29903.1	4.400e-62	59.77	hypothetical protein Naga_100035g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G04910	NO03G04910	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04910.1	NO03G04910.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04910.1.cds1	NO03G04910.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1399711..1402277-
coding sequence from alignment at chr3:1399711..1402277-

mRNA sequence

>NO03G04910.1 ID=NO03G04910.1|Name=NO03G04910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2567bp
GTGAGGGAAGGAGTACGCAGACACATTCTATGCGGCTCCAGGTTACAAGT
CGCCCTCCCTGAGGGGCTTGTCGGCAGCCATTTGCTTCCGCTGCTTTTTC
CCACTCCCGTCGTCGACCGCCTCAGTGATCGTGGGCATAGTCGTGGGACC
AGGGTTAGGCAAATTGGGGGAGGCAACAGGCTGTGTAGATAAACGAGATT
TATCGATACAGCAGCGGCGCGATTGAAAACGGCTATCTGTGGTTGAGGGA
TGGTTTGGTTCGGTTTTATTTGGTACTACTCTTAATACTGGTGCCGCCTC
TCTCATTCTTCTCACCCTCAACCTTCTATGTATCTGGACACATAGGCTCC
ACGTCGTGGAGAACTGTGAAACAACACATTCGGCCCCTTCCCCTCCTCCC
TTTTTTTCTCAAAAAAGCGACGGATGGGTACTGCACGTTTGCCTCACGCA
AATCAACCCTCTCGGTTGCGTGTGGCTTCCGGACAGCGTGACAGAGTGCT
GTACCCACTCCCTAGCATCTGTCCAATAAGAGACATGATTTCAAGCATAA
AATATTGTAACACTCAAAGTTCCTTCCCTTGATAAAATCCATCTTCAGGC
AAGGAGAGCTGCAACTCAGCCAAGCAGGGTGCTCCTCCTCACCCTCAAGA
CACAATGAGCAGCGACGCTCCAAGCCCACCCCCACTCCCACCACTACGAG
TCAGACGACGCTTAGCTCTGGGCACGGTGGCACTCTTGCTGGGCAGCATG
TTAGCGACGGTAGGCGCAGTAGCAGGTGGAGTAGCAGGCGGAATAGGGAG
GGGGAGGCTAGCAACACGACCAGGAGGTCGGCAGCACCCGCTGCCGTCAT
GGATGCGCATGGGACGAGGACAAGGAGCGTCAAAGATGGCGCATATCCGC
AGTAGTAGAAGTAGAAGTAGTAGAAGTAGTAGTAGTAGCAGCAGCAGCAG
TAATAGGAGTGGGAATTCAGCGCCGTTATCACCCACGGCGCGGAGAAGAA
AAAGGGGGGGAGAAGAAAGAGGAGAACAAGCTGCAGCAGCATCTACAGCA
GAAGCACCAGCACCTTCGGATGATAGAAGGAGGCTTTCGTTTTGCTGGCT
GAAAGCGCAGCGTGGAGGATCTTCCGCGCATGAAGACCCTTTCCAGAACC
TTGCGTTTGGAGATGGCGTCGACGGGGCAGCAGCGGATAAAGCAGCGAGG
CAGCAGCGATCCCCATCACCAGCGCCACCAGATCGCATCAAAGTCTTGGT
AAAGACCGATTCAGGCTTTAAAGATATGGACCAAAAACTGGATTTGGTGC
TCGATGGGAGCAACACAACAATTGCTGAGGTGAAGCAAATCTTGCAGAAG
CAGATGAGTGGCAGTCCACCCGTGAGACTACAGCGTTTATTCTACGCAGG
CCGGAAGCTTCAAGACGCGGAGCTGGTCGGGGATGTAATGCGACAAGACA
AAGAGGACGACGAGGAAGAGGAAGGGAGGATTGGAGGGCGGCCAGCGGTG
GCGTTGCCTATCGTGCTGGACATGCCCCCCCCTCTTCCTCATTTGGATTA
TGAGGGGATGTTGGCGTTGAAGGTTCGATTTGAATCACTTGATTTCAAAC
AGCCCTTATTTTATGCCGCGAATGCCGTGGGGCTTCGATATGCGATCCAG
GCGCTGGATGAGCATTTATTGAGGGGGAGACCGACGGAAGGAGAGGAGGA
CGAGGAGGAGGACGAGGAGGACGAGGAGGAAGGGGAGGAGGAGGCCAGGA
CGAGGAGGATGAAAGACGAGGTGATCATGTTGAAAGAATATCTTAAACAG
CATGAGCAGGAGATGCCCCCTCCTTCTCCAGTCAAACCGAACCCATATTT
GATCAGTGCTGTGGTGCGGGAGTTAGGTGTGCCGGGGTTGGAGGAGATTG
TCAAGTCCCTGGCAGTGCAGTTGAATTTTGACTGGGGACGTACGTGTAGG
TACGCATTTGCTGCTTATTTGTTCGGAAAATTTGGAGCACAAGGGCCGTG
GAAGCCGTTATTGCTGTGCATGGTCCCGGGGGTTTTCTTGCTACAGTTGA
AACCGTTCAGGTATGGAGCAAAAGTGGCGTGGGAGATGATGGCCGTCTCG
CCGCTGGTGGGTGGATTCTCGTCTGCCTTGCTGTCAGCGCCGCAGCAGGT
ATTGTTGACGTTTGATGAGCAGGCATATTTGGAGCGGTTGTATGGTGAGG
GTGGTGGGGTGGTGCCCCCCCCGATGGGACCACCGCCATCGATGTCAGAT
CTTAGGGGGGCGGGAGGAGGGAGGGGAGAGGAAGAGGATGACGAGTACGA
GGACGATGAGGATGAGGGATTGAGCATGGAGACGCAAGCGGGAAATGAAA
GAGAAAAGCTGGGGGAGGAAGAGATGGAGGAGATGATGATGGAGGAGGAA
GAGGAGGAGCAGGAGGAGGAGGAGATGGAAGAACACGAGGATGCAGAGGA
GGATGAAGAATTTGTAGAAGCGGAAGACTATGATAATGGTGGTGATGATG
ATGAAGCAGAAGAAGAAGAAGAAGAATAGGGCGAGTAAAGGATCTGCTCA
CAAAGCACATACACGAC

protein sequence of NO03G04910.1

>NO03G04910.1-protein ID=NO03G04910.1-protein|Name=NO03G04910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MSSDAPSPPPLPPLRVRRRLALGTVALLLGSMLATVGAVAGGVAGGIGRG
RLATRPGGRQHPLPSWMRMGRGQGASKMAHIRSSRSRSSRSSSSSSSSSN
RSGNSAPLSPTARRRKRGGEERGEQAAAASTAEAPAPSDDRRRLSFCWLK
AQRGGSSAHEDPFQNLAFGDGVDGAAADKAARQQRSPSPAPPDRIKVLVK
TDSGFKDMDQKLDLVLDGSNTTIAEVKQILQKQMSGSPPVRLQRLFYAGR
KLQDAELVGDVMRQDKEDDEEEEGRIGGRPAVALPIVLDMPPPLPHLDYE
GMLALKVRFESLDFKQPLFYAANAVGLRYAIQALDEHLLRGRPTEGEEDE
EEDEEDEEEGEEEARTRRMKDEVIMLKEYLKQHEQEMPPPSPVKPNPYLI
SAVVRELGVPGLEEIVKSLAVQLNFDWGRTCRYAFAAYLFGKFGAQGPWK
PLLLCMVPGVFLLQLKPFRYGAKVAWEMMAVSPLVGGFSSALLSAPQQVL
LTFDEQAYLERLYGEGGGVVPPPMGPPPSMSDLRGAGGGRGEEEDDEYED
DEDEGLSMETQAGNEREKLGEEEMEEMMMEEEEEEQEEEEMEEHEDAEED
EEFVEAEDYDNGGDDDEAEEEEEE*

mRNA from alignment at chr3:1399711..1402277-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G04910.1 ID=NO03G04910.1|Name=NO03G04910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2567bp|location=Sequence derived from alignment at chr3:1399711..1402277- (Nannochloropsis oceanica)
GTGAGGGAAGGAGTACGCAGACACATTCTATGCGGCTCCAGGTTACAAGT
CGCCCTCCCTGAGGGGCTTGTCGGCAGCCATTTGCTTCCGCTGCTTTTTC
CCACTCCCGTCGTCGACCGCCTCAGTGATCGTGGGCATAGTCGTGGGACC
AGGGTTAGGCAAATTGGGGGAGGCAACAGGCTGTGTAGATAAACGAGATT
TATCGATACAGCAGCGGCGCGATTGAAAACGGCTATCTGTGGTTGAGGGA
TGGTTTGGTTCGGTTTTATTTGGTACTACTCTTAATACTGGTGCCGCCTC
TCTCATTCTTCTCACCCTCAACCTTCTATGTATCTGGACACATAGGCTCC
ACGTCGTGGAGAACTGTGAAACAACACATTCGGCCCCTTCCCCTCCTCCC
TTTTTTTCTCAAAAAAGCGACGGATGGGTACTGCACGTTTGCCTCACGCA
AATCAACCCTCTCGGTTGCGTGTGGCTTCCGGACAGCGTGACAGAGTGCT
GTACCCACTCCCTAGCATCTGTCCAATAAGAGACATGATTTCAAGCATAA
AATATTGTAACACTCAAAGTTCCTTCCCTTGATAAAATCCATCTTCAGGC
AAGGAGAGCTGCAACTCAGCCAAGCAGGGTGCTCCTCCTCACCCTCAAGA
CACAATGAGCAGCGACGCTCCAAGCCCACCCCCACTCCCACCACTACGAG
TCAGACGACGCTTAGCTCTGGGCACGGTGGCACTCTTGCTGGGCAGCATG
TTAGCGACGGTAGGCGCAGTAGCAGGTGGAGTAGCAGGCGGAATAGGGAG
GGGGAGGCTAGCAACACGACCAGGAGGTCGGCAGCACCCGCTGCCGTCAT
GGATGCGCATGGGACGAGGACAAGGAGCGTCAAAGATGGCGCATATCCGC
AGTAGTAGAAGTAGAAGTAGTAGAAGTAGTAGTAGTAGCAGCAGCAGCAG
TAATAGGAGTGGGAATTCAGCGCCGTTATCACCCACGGCGCGGAGAAGAA
AAAGGGGGGGAGAAGAAAGAGGAGAACAAGCTGCAGCAGCATCTACAGCA
GAAGCACCAGCACCTTCGGATGATAGAAGGAGGCTTTCGTTTTGCTGGCT
GAAAGCGCAGCGTGGAGGATCTTCCGCGCATGAAGACCCTTTCCAGAACC
TTGCGTTTGGAGATGGCGTCGACGGGGCAGCAGCGGATAAAGCAGCGAGG
CAGCAGCGATCCCCATCACCAGCGCCACCAGATCGCATCAAAGTCTTGGT
AAAGACCGATTCAGGCTTTAAAGATATGGACCAAAAACTGGATTTGGTGC
TCGATGGGAGCAACACAACAATTGCTGAGGTGAAGCAAATCTTGCAGAAG
CAGATGAGTGGCAGTCCACCCGTGAGACTACAGCGTTTATTCTACGCAGG
CCGGAAGCTTCAAGACGCGGAGCTGGTCGGGGATGTAATGCGACAAGACA
AAGAGGACGACGAGGAAGAGGAAGGGAGGATTGGAGGGCGGCCAGCGGTG
GCGTTGCCTATCGTGCTGGACATGCCCCCCCCTCTTCCTCATTTGGATTA
TGAGGGGATGTTGGCGTTGAAGGTTCGATTTGAATCACTTGATTTCAAAC
AGCCCTTATTTTATGCCGCGAATGCCGTGGGGCTTCGATATGCGATCCAG
GCGCTGGATGAGCATTTATTGAGGGGGAGACCGACGGAAGGAGAGGAGGA
CGAGGAGGAGGACGAGGAGGACGAGGAGGAAGGGGAGGAGGAGGCCAGGA
CGAGGAGGATGAAAGACGAGGTGATCATGTTGAAAGAATATCTTAAACAG
CATGAGCAGGAGATGCCCCCTCCTTCTCCAGTCAAACCGAACCCATATTT
GATCAGTGCTGTGGTGCGGGAGTTAGGTGTGCCGGGGTTGGAGGAGATTG
TCAAGTCCCTGGCAGTGCAGTTGAATTTTGACTGGGGACGTACGTGTAGG
TACGCATTTGCTGCTTATTTGTTCGGAAAATTTGGAGCACAAGGGCCGTG
GAAGCCGTTATTGCTGTGCATGGTCCCGGGGGTTTTCTTGCTACAGTTGA
AACCGTTCAGGTATGGAGCAAAAGTGGCGTGGGAGATGATGGCCGTCTCG
CCGCTGGTGGGTGGATTCTCGTCTGCCTTGCTGTCAGCGCCGCAGCAGGT
ATTGTTGACGTTTGATGAGCAGGCATATTTGGAGCGGTTGTATGGTGAGG
GTGGTGGGGTGGTGCCCCCCCCGATGGGACCACCGCCATCGATGTCAGAT
CTTAGGGGGGCGGGAGGAGGGAGGGGAGAGGAAGAGGATGACGAGTACGA
GGACGATGAGGATGAGGGATTGAGCATGGAGACGCAAGCGGGAAATGAAA
GAGAAAAGCTGGGGGAGGAAGAGATGGAGGAGATGATGATGGAGGAGGAA
GAGGAGGAGCAGGAGGAGGAGGAGATGGAAGAACACGAGGATGCAGAGGA
GGATGAAGAATTTGTAGAAGCGGAAGACTATGATAATGGTGGTGATGATG
ATGAAGCAGAAGAAGAAGAAGAAGAATAGGGCGAGTAAAGGATCTGCTCA
CAAAGCACATACACGAC

Coding sequence (CDS) from alignment at chr3:1399711..1402277-

>NO03G04910.1 ID=NO03G04910.1|Name=NO03G04910.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr3:1399711..1402277- (Nannochloropsis oceanica)
ATGAGCAGCGACGCTCCAAGCCCACCCCCACTCCCACCACTACGAGTCAG
ACGACGCTTAGCTCTGGGCACGGTGGCACTCTTGCTGGGCAGCATGTTAG
CGACGGTAGGCGCAGTAGCAGGTGGAGTAGCAGGCGGAATAGGGAGGGGG
AGGCTAGCAACACGACCAGGAGGTCGGCAGCACCCGCTGCCGTCATGGAT
GCGCATGGGACGAGGACAAGGAGCGTCAAAGATGGCGCATATCCGCAGTA
GTAGAAGTAGAAGTAGTAGAAGTAGTAGTAGTAGCAGCAGCAGCAGTAAT
AGGAGTGGGAATTCAGCGCCGTTATCACCCACGGCGCGGAGAAGAAAAAG
GGGGGGAGAAGAAAGAGGAGAACAAGCTGCAGCAGCATCTACAGCAGAAG
CACCAGCACCTTCGGATGATAGAAGGAGGCTTTCGTTTTGCTGGCTGAAA
GCGCAGCGTGGAGGATCTTCCGCGCATGAAGACCCTTTCCAGAACCTTGC
GTTTGGAGATGGCGTCGACGGGGCAGCAGCGGATAAAGCAGCGAGGCAGC
AGCGATCCCCATCACCAGCGCCACCAGATCGCATCAAAGTCTTGGTAAAG
ACCGATTCAGGCTTTAAAGATATGGACCAAAAACTGGATTTGGTGCTCGA
TGGGAGCAACACAACAATTGCTGAGGTGAAGCAAATCTTGCAGAAGCAGA
TGAGTGGCAGTCCACCCGTGAGACTACAGCGTTTATTCTACGCAGGCCGG
AAGCTTCAAGACGCGGAGCTGGTCGGGGATGTAATGCGACAAGACAAAGA
GGACGACGAGGAAGAGGAAGGGAGGATTGGAGGGCGGCCAGCGGTGGCGT
TGCCTATCGTGCTGGACATGCCCCCCCCTCTTCCTCATTTGGATTATGAG
GGGATGTTGGCGTTGAAGGTTCGATTTGAATCACTTGATTTCAAACAGCC
CTTATTTTATGCCGCGAATGCCGTGGGGCTTCGATATGCGATCCAGGCGC
TGGATGAGCATTTATTGAGGGGGAGACCGACGGAAGGAGAGGAGGACGAG
GAGGAGGACGAGGAGGACGAGGAGGAAGGGGAGGAGGAGGCCAGGACGAG
GAGGATGAAAGACGAGGTGATCATGTTGAAAGAATATCTTAAACAGCATG
AGCAGGAGATGCCCCCTCCTTCTCCAGTCAAACCGAACCCATATTTGATC
AGTGCTGTGGTGCGGGAGTTAGGTGTGCCGGGGTTGGAGGAGATTGTCAA
GTCCCTGGCAGTGCAGTTGAATTTTGACTGGGGACGTACGTGTAGGTACG
CATTTGCTGCTTATTTGTTCGGAAAATTTGGAGCACAAGGGCCGTGGAAG
CCGTTATTGCTGTGCATGGTCCCGGGGGTTTTCTTGCTACAGTTGAAACC
GTTCAGGTATGGAGCAAAAGTGGCGTGGGAGATGATGGCCGTCTCGCCGC
TGGTGGGTGGATTCTCGTCTGCCTTGCTGTCAGCGCCGCAGCAGGTATTG
TTGACGTTTGATGAGCAGGCATATTTGGAGCGGTTGTATGGTGAGGGTGG
TGGGGTGGTGCCCCCCCCGATGGGACCACCGCCATCGATGTCAGATCTTA
GGGGGGCGGGAGGAGGGAGGGGAGAGGAAGAGGATGACGAGTACGAGGAC
GATGAGGATGAGGGATTGAGCATGGAGACGCAAGCGGGAAATGAAAGAGA
AAAGCTGGGGGAGGAAGAGATGGAGGAGATGATGATGGAGGAGGAAGAGG
AGGAGCAGGAGGAGGAGGAGATGGAAGAACACGAGGATGCAGAGGAGGAT
GAAGAATTTGTAGAAGCGGAAGACTATGATAATGGTGGTGATGATGATGA
AGCAGAAGAAGAAGAAGAAGAATAG

Synonyms

Publications