NO03G04890, NO03G04890 (gene) Nannochloropsis oceanica

Overview
NameNO03G04890
Unique NameNO03G04890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2773
Alignment locationchr3:1395222..1397994 +

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1395222..1397994 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
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BLAST of NO03G04890 vs. NCBI_GenBank
Match: EWM29927.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 379.4 bits (973), Expect = 1.900e-101
Identity = 283/553 (51.18%), Postives = 349/553 (63.11%), Query Frame = 0 
Query:   19 MRTGILFLTLSAFGALSFSTTLCRAAVTAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSGRDIHEVPWGEIFSALQDSNLGAEDMRDLQVYMQDTIKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---------GVEGAEGAGTEESLATPVTTASAGEGEDSEGEE------------------MDDAPSPRTTFEWKSTIAAFKEQTKIIERSISLRKDGNEKLAAGDIEGAYSQYEEALMVLEKGTVVQTGRTRRCAQSCQLNMAVVETKRSDYAKALGMYSTVLAGLESG-SEGGKGDDKAVRWQCLTKRARIARRMGRMEEAFKDLVQANQLKPNDQKVAAELEEMGGTPVTPPPQAFCSSFLPSAAGGESPLDAL---LGGEGXXXXDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSMGSRMVDMLEQPETLTMVCTLLKKLQPDYLESLAVTANLPVSKGTIRWIHEKATGLEPRDIKRWVSRGKWAHSSYVSTKRTWESVKPLVRPTRLVMTYCLVLRWMAACL 541
            MR  +    LS  GA+S ++ LC AA+TAPP   XXXXXXXXXXXXXXXXXXXXX                  I  VPWGEIFSALQDSNL  EDMRDLQ YM D IK Q                            +         G E   G   +E +     TA  G  E +  E+                             +WKS++ +F+ Q+++I RS++LRK GNE+LAAGD++ A S YEEAL VLE+GTVV+TGRTR CA SC+LN+AV   KR ++ KA+ +Y+T+L  L+ G  E G  +++AVRWQCLTKRAR+ RR+GR+EEAF DLV+AN+L+P+D+KVAAELEEMGGTP   PP         +AA   SPLD L        XXXX  XXXXXXXXXXXXXXXXXXXXXX          ++SMG+R++D+LEQPETL  VC LLKKL+ DYL+SLAVTANLPVS  TIRW+H KA G+EP +I+RW+ RGKWA ++YVSTKRTW SV+PLVRP RL++ Y LVLRW+ AC+
Sbjct:    1 MRPPVFLQILSLLGAISSASRLCHAAMTAPPSSSXXXXXXXXXXXXXXXXXXXXXEG---------------GIDAVPWGEIFSALQDSNLSPEDMRDLQAYMLDRIKTQRAAQAAVEEQKQRMKRRRIRRGELEGPGLATGTKARERGAEEEGGCIPKEEMEAASATAIDGSIEGAIREDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWKSSLESFQTQSQVIARSVALRKSGNERLAAGDVDEAVSLYEEALAVLERGTVVETGRTRVCAYSCRLNIAVGVAKRGEHTKAVEIYTTLLRVLDEGRDEAGGREERAVRWQCLTKRARMMRRLGRVEEAFADLVEANRLRPSDRKVAAELEEMGGTPSPLPPSPXXXXXXGAAA---SPLDTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVLEGLMGKYVASMGTRLLDVLEQPETLNTVCVLLKKLEFDYLKSLAVTANLPVSDATIRWVHTKAMGVEPEEIRRWIGRGKWARAAYVSTKRTWASVQPLVRPVRLLVMYALVLRWIGACV 535
The following BLAST results are available for this feature:
BLAST of NO03G04890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29927.11.900e-10151.18Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005394NSK005394Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04890.1NO03G04890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626996gene_1697Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g3gene716Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04890.1NO03G04890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04890 ID=NO03G04890|Name=NO03G04890|organism=Nannochloropsis oceanica|type=gene|length=2773bp
TCCTCGATCAATTCTTTCGTTCCTTTACCAATTCTTTCGTTTCTTTACAT
AGTATAGCCACAATCTCCACATCATATCTTACAAATCAATTAACAACATA
ATTTTGGTTCCATCCTGACAAAGAGAAATGCAAAGGTCCATTTCCGCCAC
TGCGTATGTGCAACGCCATTTGAAGCCCGGCCACCGGCTGCTGTGAGGGA
CGACTTGATGGTGTCAGTCTGCTAATGGTTCAAGTGGTGTTGGTGTTTGT
GGTGGTGGTGACACTGCTATAGGAGCTTGTACTCAATCAATGGCTGCTGC
CACCTCCGCAACTATTAGCGATCTGGGGCTGCTAATAAATTATCAAGGCT
GTCTGCTCATTAGTATGCCACCCATCCGCTTCAAACCACAGAGCCCGCGC
CGACCTCTTCTGTCATGGTTTTACTGCTCCAACTGCCGGCGCCGCCAGTG
TTTATAGCACCGCTTTAATCTCCGCACCTGCCATGCCCCCCCCCCCATTT
TCCGCTCCCGCCGCAGCTGTAGCGGTAGCTGGAGTCCGTGGCGGCACGTC
AAGCGAAAGCATAATCAGAGATGTTGGCAGGCTGTTGTTGTTGCCTTGGG
GGCTGGATTTCGACAATGCCCTTGCGAACTCAGCAGTCACAAAATTCGCT
TTATGTCTCCCGTACCTGTCAATGAGGGAGTGGACGTGGGATTTTGAGTA
TGGAGCCTCATCTGTGATTTTTCACTTGGTTAAGGTCCGCAGAACGCGAC
TCCCGACTCGTTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCT
CCACACCCCTTGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGC
ACTCAATTTACGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGC
TGCTGCCACGCAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGG
AGACGGAGAGGCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAA
CCGCACACACTCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGA
GCGCATTTGGGGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTG
ACTGCCCCACCATCCTCAAGgtatgtactgatagtgcgtcgacactatcc
accccataccttctcctagtgatgcccctcctccctcctctcttgcctca
catgtcctgaacacgaccctaaaataacagTACCAGCGCCAGACCGCCAT
CATCATCGACAGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTCTTCC
TCCTCCCCCTTATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAGACAT
CCATGAAGTACCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGTAATT
TAGGAGCAGAAGACATGCGTGATTTACAAGTATACATGCAAGATACAATA
AAAGCGCAGCAGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGAGGAG
GAGGAGACGGAGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTAGGAG
TAGAAGGAGCAGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCCGGTA
ACCACAGCGTCTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGATGGA
CGACGCGCCATCACCACGAACGACATTTGAGTGGAAGAGCACTATTGCCG
CTTTCAAGGAGCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCGCAAG
GACGGCAATGAAAAACTTGCGGCGGGGGATATAGAGGGCGCATACAGTCA
GTACGAAGAGGCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAAACGG
GAAGGACGAGAAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGTGGTC
GAGACCAAGAGATCGGACTACGCTAAGGCCCTGGGAATGTATAGTACGGT
GTTGGCAGGCCTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGACAAAG
CGGTGCGCTGGCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAGGATG
GGGAGGATGGAGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAACTCAA
GCCCAACGACCAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGGACCC
CTGTGACGCCTCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAGCGCG
GCAGGGGGTGAGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAGGAGG
AGGGGCGGATATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGGGCAG
GAGGACTGGGGGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCTGATG
GGTAACTATTTGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGGAGCA
GCCGGAGACGTTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAACCCG
ATTATCTAGAGTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAAGGGG
ACTATCAGATGGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGGATAT
CAAGCGGTGGGTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTGTCCA
CGAAGAGGACATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAGGCTA
GTGATGACGTATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGCTGGG
GTAGGTGGCGGGGAGAGATTGAAAGGGAGGGTGGTGGGAGAACAGAAAGA
AAAGATACTAGCCAAGCAAATGA
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protein sequence of NO03G04890.1

>NO03G04890.1-protein ID=NO03G04890.1-protein|Name=NO03G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MIITLFHRCSSNRTHSSFMRTGILFLTLSAFGALSFSTTLCRAAVTAPPS
SSTSARPPSSSTASSSSPLSSSSSSSSPLSPSSATRRSGRDIHEVPWGEI
FSALQDSNLGAEDMRDLQVYMQDTIKAQQAAQAEEEGRKRRRRRRRRLDA
GETTAAVGVEGAEGAGTEESLATPVTTASAGEGEDSEGEEMDDAPSPRTT
FEWKSTIAAFKEQTKIIERSISLRKDGNEKLAAGDIEGAYSQYEEALMVL
EKGTVVQTGRTRRCAQSCQLNMAVVETKRSDYAKALGMYSTVLAGLESGS
EGGKGDDKAVRWQCLTKRARIARRMGRMEEAFKDLVQANQLKPNDQKVAA
ELEEMGGTPVTPPPQAFCSSFLPSAAGGESPLDALLGGEGGGGADILGGL
LGSLGSGAGGLGGAGGEGDILGGLMGNYLSSMGSRMVDMLEQPETLTMVC
TLLKKLQPDYLESLAVTANLPVSKGTIRWIHEKATGLEPRDIKRWVSRGK
WAHSSYVSTKRTWESVKPLVRPTRLVMTYCLVLRWMAACLLG*
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Synonyms
Publications