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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1395222..1397994 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04890.1 vs.
Match: EWM29927.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 468.8 bits (1205), Expect = 2.300e-128 Identity = 297/555 (53.51%), Postives = 377/555 (67.93%), Query Frame = 0
Query: 19 MRTGILFLTLSAFGALSFSTTLCRAAVTAPPSSSTSARPPSSSTASSSSPLSSSSSSSSPLSPSSATRRSGRDIHEVPWGEIFSALQDSNLGAEDMRDLQVYMQDTIKAQQAAQAEEEGRKRRRRRRR---------RLDAGETTAAVGVEGAEGAGTEESLATPVTTASAG--EG---EDSEGEEMDD-------------APSPRTTFEWKSTIAAFKEQTKIIERSISLRKDGNEKLAAGDIEGAYSQYEEALMVLEKGTVVQTGRTRRCAQSCQLNMAVVETKRSDYAKALGMYSTVLAGLESG-SEGGKGDDKAVRWQCLTKRARIARRMGRMEEAFKDLVQANQLKPNDQKVAAELEEMGGTPVTPPPQAFCSSFLPSAAGGESPLDALLGGEGGGGADILGGLLGSLGSGAG--GL---GGAGGEGDILGGLMGNYLSSMGSRMVDMLEQPETLTMVCTLLKKLQPDYLESLAVTANLPVSKGTIRWIHEKATGLEPRDIKRWVSRGKWAHSSYVSTKRTWESVKPLVRPTRLVMTYCLVLRWMAACL 541
MR + LS GA+S ++ LC AA+TAPPSSS ARP + SP S SS SPL I VPWGEIFSALQDSNL EDMRDLQ YM D IK Q+AAQA E +K+R +RRR L G G E G +E + TA G EG ED E E+++ A + F+WKS++ +F+ Q+++I RS++LRK GNE+LAAGD++ A S YEEAL VLE+GTVV+TGRTR CA SC+LN+AV KR ++ KA+ +Y+T+L L+ G E G +++AVRWQCLTKRAR+ RR+GR+EEAF DLV+AN+L+P+D+KVAAELEEMGGTP PP S F +AA SPLD LLGGEGGG ++LG + GS+GSG+G G+ GG GG G++L GLMG Y++SMG+R++D+LEQPETL VC LLKKL+ DYL+SLAVTANLPVS TIRW+H KA G+EP +I+RW+ RGKWA ++YVSTKRTW SV+PLVRP RL++ Y LVLRW+ AC+
Sbjct: 1 MRPPVFLQILSLLGAISSASRLCHAAMTAPPSSS-GARP------TPPSPSSLGSSFPSPLKEGG--------IDAVPWGEIFSALQDSNLSPEDMRDLQAYMLDRIKTQRAAQAAVEEQKQRMKRRRIRRGELEGPGLATGTKARERGAEEEGGCIPKEEMEAASATAIDGSIEGAIREDKERREVENEEDEEEKALSKATAAAAAAAFDWKSSLESFQTQSQVIARSVALRKSGNERLAAGDVDEAVSLYEEALAVLERGTVVETGRTRVCAYSCRLNIAVGVAKRGEHTKAVEIYTTLLRVLDEGRDEAGGREERAVRWQCLTKRARMMRRLGRVEEAFADLVEANRLRPSDRKVAAELEEMGGTPSPLPPSPPPSLFPGAAA---SPLDTLLGGEGGG--NMLGNIFGSIGSGSGMPGMLEGGGDGGGGNVLEGLMGKYVASMGTRLLDVLEQPETLNTVCVLLKKLEFDYLKSLAVTANLPVSDATIRWVHTKAMGVEPEEIRRWIGRGKWARAAYVSTKRTWASVQPLVRPVRLLVMYALVLRWIGACV 535
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04890.1 ID=NO03G04890.1|Name=NO03G04890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp
TCCTCGATCAATTCTTTCGTTCCTTTACCAATTCTTTCGTTTCTTTACAT
AGTATAGCCACAATCTCCACATCATATCTTACAAATCAATTAACAACATA
ATTTTGGTTCCATCCTGACAAAGAGAAATGCAAAGGTCCATTTCCGCCAC
TGCGTATGTGCAACGCCATTTGAAGCCCGGCCACCGGCTGCTGTGAGGGA
CGACTTGATGGTGTCAGTCTGCTAATGGTTCAAGTGGTGTTGGTGTTTGT
GGTGGTGGTGACACTGCTATAGGAGCTTGTACTCAATCAATGGCTGCTGC
CACCTCCGCAACTATTAGCGATCTGGGGCTGCTAATAAATTATCAAGGCT
GTCTGCTCATTAGTATGCCACCCATCCGCTTCAAACCACAGAGCCCGCGC
CGACCTCTTCTGTCATGGTTTTACTGCTCCAACTGCCGGCGCCGCCAGTG
TTTATAGCACCGCTTTAATCTCCGCACCTGCCATGCCCCCCCCCCCATTT
TCCGCTCCCGCCGCAGCTGTAGCGGTAGCTGGAGTCCGTGGCGGCACGTC
AAGCGAAAGCATAATCAGAGATGTTGGCAGGCTGTTGTTGTTGCCTTGGG
GGCTGGATTTCGACAATGCCCTTGCGAACTCAGCAGTCACAAAATTCGCT
TTATGTCTCCCGTACCTGTCAATGAGGGAGTGGACGTGGGATTTTGAGTA
TGGAGCCTCATCTGTGATTTTTCACTTGGTTAAGGTCCGCAGAACGCGAC
TCCCGACTCGTTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCT
CCACACCCCTTGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGC
ACTCAATTTACGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGC
TGCTGCCACGCAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGG
AGACGGAGAGGCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAA
CCGCACACACTCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGA
GCGCATTTGGGGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTG
ACTGCCCCACCATCCTCAAGTACCAGCGCCAGACCGCCATCATCATCGAC
AGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCT
TATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAGACATCCATGAAGTA
CCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGA
AGACATGCGTGATTTACAAGTATACATGCAAGATACAATAAAAGCGCAGC
AGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGG
AGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGC
AGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGT
CTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGATGGACGACGCGCCA
TCACCACGAACGACATTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGA
GCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATG
AAAAACTTGCGGCGGGGGATATAGAGGGCGCATACAGTCAGTACGAAGAG
GCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAG
AAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGTGGTCGAGACCAAGA
GATCGGACTACGCTAAGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGC
CTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTG
GCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGG
AGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAACTCAAGCCCAACGAC
CAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGGACCCCTGTGACGCC
TCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTG
AGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGAT
ATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGG
GGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCTGATGGGTAACTATT
TGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGGAGCAGCCGGAGACG
TTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAACCCGATTATCTAGA
GTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAAGGGGACTATCAGAT
GGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGGATATCAAGCGGTGG
GTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTGTCCACGAAGAGGAC
ATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAGGCTAGTGATGACGT
ATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGCTGGGGTAGGTGGCG
GGGAGAGATTGAAAGGGAGGGTGGTGGGAGAACAGAAAGAAAAGATACTA
GCCAAGCAAATGA back to topprotein sequence of NO03G04890.1 >NO03G04890.1-protein ID=NO03G04890.1-protein|Name=NO03G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MIITLFHRCSSNRTHSSFMRTGILFLTLSAFGALSFSTTLCRAAVTAPPS
SSTSARPPSSSTASSSSPLSSSSSSSSPLSPSSATRRSGRDIHEVPWGEI
FSALQDSNLGAEDMRDLQVYMQDTIKAQQAAQAEEEGRKRRRRRRRRLDA
GETTAAVGVEGAEGAGTEESLATPVTTASAGEGEDSEGEEMDDAPSPRTT
FEWKSTIAAFKEQTKIIERSISLRKDGNEKLAAGDIEGAYSQYEEALMVL
EKGTVVQTGRTRRCAQSCQLNMAVVETKRSDYAKALGMYSTVLAGLESGS
EGGKGDDKAVRWQCLTKRARIARRMGRMEEAFKDLVQANQLKPNDQKVAA
ELEEMGGTPVTPPPQAFCSSFLPSAAGGESPLDALLGGEGGGGADILGGL
LGSLGSGAGGLGGAGGEGDILGGLMGNYLSSMGSRMVDMLEQPETLTMVC
TLLKKLQPDYLESLAVTANLPVSKGTIRWIHEKATGLEPRDIKRWVSRGK
WAHSSYVSTKRTWESVKPLVRPTRLVMTYCLVLRWMAACLLG* back to topmRNA from alignment at chr3:1395222..1397994+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04890.1 ID=NO03G04890.1|Name=NO03G04890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2773bp|location=Sequence derived from alignment at chr3:1395222..1397994+ (Nannochloropsis oceanica)
TCCTCGATCAATTCTTTCGTTCCTTTACCAATTCTTTCGTTTCTTTACAT
AGTATAGCCACAATCTCCACATCATATCTTACAAATCAATTAACAACATA
ATTTTGGTTCCATCCTGACAAAGAGAAATGCAAAGGTCCATTTCCGCCAC
TGCGTATGTGCAACGCCATTTGAAGCCCGGCCACCGGCTGCTGTGAGGGA
CGACTTGATGGTGTCAGTCTGCTAATGGTTCAAGTGGTGTTGGTGTTTGT
GGTGGTGGTGACACTGCTATAGGAGCTTGTACTCAATCAATGGCTGCTGC
CACCTCCGCAACTATTAGCGATCTGGGGCTGCTAATAAATTATCAAGGCT
GTCTGCTCATTAGTATGCCACCCATCCGCTTCAAACCACAGAGCCCGCGC
CGACCTCTTCTGTCATGGTTTTACTGCTCCAACTGCCGGCGCCGCCAGTG
TTTATAGCACCGCTTTAATCTCCGCACCTGCCATGCCCCCCCCCCCATTT
TCCGCTCCCGCCGCAGCTGTAGCGGTAGCTGGAGTCCGTGGCGGCACGTC
AAGCGAAAGCATAATCAGAGATGTTGGCAGGCTGTTGTTGTTGCCTTGGG
GGCTGGATTTCGACAATGCCCTTGCGAACTCAGCAGTCACAAAATTCGCT
TTATGTCTCCCGTACCTGTCAATGAGGGAGTGGACGTGGGATTTTGAGTA
TGGAGCCTCATCTGTGATTTTTCACTTGGTTAAGGTCCGCAGAACGCGAC
TCCCGACTCGTTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCT
CCACACCCCTTGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGC
ACTCAATTTACGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGC
TGCTGCCACGCAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGG
AGACGGAGAGGCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAA
CCGCACACACTCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGA
GCGCATTTGGGGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTG
ACTGCCCCACCATCCTCAAGGTATGTACTGATAGTGCGTCGACACTATCC
ACCCCATACCTTCTCCTAGTGATGCCCCTCCTCCCTCCTCTCTTGCCTCA
CATGTCCTGAACACGACCCTAAAATAACAGTACCAGCGCCAGACCGCCAT
CATCATCGACAGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTCTTCC
TCCTCCCCCTTATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAGACAT
CCATGAAGTACCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGTAATT
TAGGAGCAGAAGACATGCGTGATTTACAAGTATACATGCAAGATACAATA
AAAGCGCAGCAGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGAGGAG
GAGGAGACGGAGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTAGGAG
TAGAAGGAGCAGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCCGGTA
ACCACAGCGTCTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGATGGA
CGACGCGCCATCACCACGAACGACATTTGAGTGGAAGAGCACTATTGCCG
CTTTCAAGGAGCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCGCAAG
GACGGCAATGAAAAACTTGCGGCGGGGGATATAGAGGGCGCATACAGTCA
GTACGAAGAGGCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAAACGG
GAAGGACGAGAAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGTGGTC
GAGACCAAGAGATCGGACTACGCTAAGGCCCTGGGAATGTATAGTACGGT
GTTGGCAGGCCTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGACAAAG
CGGTGCGCTGGCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAGGATG
GGGAGGATGGAGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAACTCAA
GCCCAACGACCAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGGACCC
CTGTGACGCCTCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAGCGCG
GCAGGGGGTGAGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAGGAGG
AGGGGCGGATATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGGGCAG
GAGGACTGGGGGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCTGATG
GGTAACTATTTGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGGAGCA
GCCGGAGACGTTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAACCCG
ATTATCTAGAGTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAAGGGG
ACTATCAGATGGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGGATAT
CAAGCGGTGGGTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTGTCCA
CGAAGAGGACATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAGGCTA
GTGATGACGTATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGCTGGG
GTAGGTGGCGGGGAGAGATTGAAAGGGAGGGTGGTGGGAGAACAGAAAGA
AAAGATACTAGCCAAGCAAATGA back to topCoding sequence (CDS) from alignment at chr3:1395222..1397994+ >NO03G04890.1 ID=NO03G04890.1|Name=NO03G04890.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr3:1395222..1397994+ (Nannochloropsis oceanica)
ATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACACTCCAG
CTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGGGGCGC
TCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCACCATCC
TCAAGTACCAGCGCCAGACCGCCATCATCATCGACAGCCTCCTCCTCTTC
TCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCTTATCCCCGTCATCTG
CTACCAGAAGAAGCGGCAGAGACATCCATGAAGTACCATGGGGTGAAATC
TTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGAAGACATGCGTGATTT
ACAAGTATACATGCAAGATACAATAAAAGCGCAGCAGGCAGCACAGGCGG
AGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGGAGAAGATTGGATGCA
GGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGCAGAAGGAGCTGGAAC
GGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGTCTGCTGGAGAAGGAG
AGGATAGTGAGGGGGAGGAGATGGACGACGCGCCATCACCACGAACGACA
TTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGAGCAAACCAAAATCAT
TGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATGAAAAACTTGCGGCGG
GGGATATAGAGGGCGCATACAGTCAGTACGAAGAGGCCCTCATGGTACTA
GAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAGAAGGTGTGCGCAGTC
GTGTCAATTGAACATGGCAGTGGTCGAGACCAAGAGATCGGACTACGCTA
AGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGCCTTGAGAGTGGAAGT
GAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTGGCAATGTCTGACCAA
GCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGGAGGAAGCGTTTAAGG
ACTTGGTGCAGGCAAATCAACTCAAGCCCAACGACCAAAAAGTTGCGGCG
GAATTGGAGGAAATGGGAGGGACCCCTGTGACGCCTCCGCCGCAGGCTTT
CTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTGAGTCGCCCTTGGATG
CGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGATATTCTTGGCGGTCTG
CTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGGGGGAGCAGGAGGGGA
AGGAGATATTTTGGGGGGGCTGATGGGTAACTATTTGTCGTCCATGGGCT
CAAGGATGGTGGATATGTTGGAGCAGCCGGAGACGTTGACGATGGTGTGC
ACCTTGTTAAAAAAACTTCAACCCGATTATCTAGAGTCCCTGGCCGTGAC
CGCTAACCTCCCCGTGTCCAAGGGGACTATCAGATGGATCCATGAGAAGG
CTACAGGTCTTGAGCCACGGGATATCAAGCGGTGGGTGAGTAGGGGAAAA
TGGGCCCATTCATCCTACGTGTCCACGAAGAGGACATGGGAGAGTGTGAA
GCCCCTGGTGAGACCCACCAGGCTAGTGATGACGTATTGCTTGGTCTTGA
GGTGGATGGCAGCGTGTCTGCTGGGGTAG back to top
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