NO03G04750, NO03G04750 (gene) Nannochloropsis oceanica

Overview
NameNO03G04750
Unique NameNO03G04750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1690
Alignment locationchr3:1351354..1353043 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1351354..1353043 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04750 vs. NCBI_GenBank
Match: EWM29898.1 (hypothetical protein Naga_100035g21 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 1.200e-30
Identity = 103/250 (41.20%), Postives = 131/250 (52.40%), Query Frame = 0 
Query:    7 PSPPPAPAAAPSDKTGKATAVISFSPSWEDQEVSIPDMSAWLAKLSLTEKEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVTPVQ-RSKPSQQPS--------QATPSPNLSRYGADLGDIRDVVRDLPPEDILAHGLYLWGFPPSSSSTTEREVLVSPWTDVGALITWLPPHDACAVAMFYSIPVANRALRQVHAPTGVTAQSLKRAAASVQQQALAVP-TVP 247
            P+ P   ++      GK  A  S S +WED++ ++PD++A L+KLSL +   +                                                    P TPVQ R  P+ Q S        + T SP LSRYG DLG++ DVVRDLP  DILAHGLYL GF P +SS  ER+ LVSPWT VGA+I WL P ++ AVAMFYSI  ANRALR+V +  GV  QSLK A  SVQ++AL+   T+P
Sbjct:   12 PAGPNESSSNEKPVKGKGGAASSPS-TWEDEDATVPDITAELSKLSLDKTGQA--------------SKNRFTRRGQAIERWASIPTTLPASESKPPGQREQREHPRTPVQHRHSPTTQISSQAQKTKARVTSSPTLSRYGVDLGNLSDVVRDLPATDILAHGLYLSGF-PHTSSEPERQALVSPWTKVGAMIIWLSPRNSHAVAMFYSIATANRALRKVESQGGVKVQSLKDATPSVQREALSAGLTIP 245
The following BLAST results are available for this feature:
BLAST of NO03G04750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29898.11.200e-3041.20hypothetical protein Naga_100035g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005408NSK005408Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04750.1NO03G04750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G04750.2NO03G04750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573073gene_1680Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g21gene728Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04750.1NO03G04750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G04750.2NO03G04750.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04750 ID=NO03G04750|Name=NO03G04750|organism=Nannochloropsis oceanica|type=gene|length=1690bp
TGATTGCCCTGCCCATGAGGTTGTGATACTCAACATGGTACAGCAGTTCC
GTCCTTCTTCAGCATGCGCTATGAAACCCTCCCCGAGTATGCACTCTGAA
GAAACAACAAGTCATGTCATTTGCCAGCAGTCTCTGTCTTGCAACAACAG
GTTCTAAGCAGTCTGTCCATCATATGACTCCGTGCCTTCACCATTCCCAC
AAACAGGGTCACCTGGCTCCTGCCCCTTTGGTACATGTTGTCACGTCGAA
AGGACTACTAGGCAAGCAAATCCATACATAGACTGCCTACCCTTCATTCC
TCTCCCACGATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGC
AGCAGCACCATCGGACAAGACAGGGAAGGCCACGGCTGTGATATCGTTCT
CACCGTCGTGGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTTGG
CTGGCGAAGCTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCA
GGAGCAGTTCGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCAC
CATCAACCCCTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACC
AAGACAAGACAACGACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGAC
ACCTGTACAACGCAGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTT
CCCCAAACTTAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGgtata
tttgaccgatcaaaatgttgtgagcgacggaaagattcatttcgagggta
tcctttggatgacggaagtagctttatccactctcctcttctgatgtcct
cccaaggcgcaccacacgtgagcctgtcctctctcattctccaccacgac
cttcacagcctattcacctggtactattcctttctctcttccaacgactg
ttatctcatatacatgtacaaacaaatggatagACGTGGTTCGCGACCTT
CCCCCGGAGGACATCTTGGCCCATGGCCTCTATCTCTGGGGCTTTCCCCC
ATCCTCTTCCTCGACCACAGAGCGGGAGGTGCTAGTCAGTCCATGGACGG
ATGTCGGGGCACTCATCACGTGGTTGCCACCGCATGATGCTTGTGCGGTG
GCCATGTTCTATTCTATCCCGGTAGCTAATCGTGCGTTGCGGCAAGTCCA
TGCGCCGACAGGGGTGACGGCACAGAGTCTGAAAAGGGCTGCGGCATCGG
TCCAGCAACAGGCATTAGCAGgtaagatgaattgaaaagtgaggaaagat
gactggaggaaagacatgaagtcaaatgaaaatattctgtaaatgtcgaa
agTACCAACAGTCCCACATACGCGTCGACAGCGGGACTGGCTATCCCGCC
ACGCCCCAAGGGCGACACTGCCGTGCCCTCTCGTCTCATCCTGGGGGCGC
TTGGCATTCGTTCCCCCAGCAGTACCCGACCTGCCATCGGCAGTGTGTCG
GTTGGTGGGGTAAGACGGTCAAGCAGGATACGTGAGCAGCAGGAGGCAGC
GGCGGCGGGAACGAGGAAACTCGAAGAGGGAAACGGCGGGGGATCGTGCT
CGCAGGGTGAGGGATAAATGGGTCGAGGGAACTGACCAAGTGAAGACATG
TAAAGACAAATAAATATAAAGAGTAGTAGTATTTCCCCCC
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protein sequence of NO03G04750.1

>NO03G04750.1-protein ID=NO03G04750.1-protein|Name=NO03G04750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MADDAIPSPPPAPAAAPSDKTGKATAVISFSPSWEDQEVSIPDMSAWLAK
LSLTEKEASKDQEQEQFDDRDKRSDIRTAAPSTPPLVPPFIPRASKTKTR
QRPKPEPPGRAPVTPVQRSKPSQQPSQATPSPNLSRYGADLGDIRDVVRD
LPPEDILAHGLYLWGFPPSSSSTTEREVLVSPWTDVGALITWLPPHDACA
VAMFYSIPVANRALRQVHAPTGVTAQSLKRAAASVQQQALAAGLAIPPRP
KGDTAVPSRLILGALGIRSPSSTRPAIGSVSVGGVRRSSRIREQQEAAAA
GTRKLEEGNGGGSCSQGEG*
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protein sequence of NO03G04750.2

>NO03G04750.2-protein ID=NO03G04750.2-protein|Name=NO03G04750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MADDAIPSPPPAPAAAPSDKTGKATAVISFSPSWEDQEVSIPDMSAWLAK
LSLTEKEASKDQEQEQFDDRDKRSDIRTAAPSTPPLVPPFIPRASKTKTR
QRPKPEPPGRAPVTPVQRSKPSQQPSQATPSPNLSRYGADLGDIRDVVRD
LPPEDILAHGLYLWGFPPSSSSTTEREVLVSPWTDVGALITWLPPHDACA
VAMFYSIPVANRALRQVHAPTGVTAQSLKRAAASVQQQALAVPTVPHTRR
QRDWLSRHAPRATLPCPLVSSWGRLAFVPPAVPDLPSAVCRLVG*
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Synonyms
Publications