NO03G04750.2, NO03G04750.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04750.2
Unique NameNO03G04750.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1371
Alignment locationchr3:1351354..1353043 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1351354..1353043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04750.2 vs.
Match: EWM29898.1 (hypothetical protein Naga_100035g21 [Nannochloropsis gaditana])

HSP 1 Score: 154.5 bits (389), Expect = 5.300e-34
Identity = 106/242 (43.80%), Postives = 148/242 (61.16%), Query Frame = 0 
Query:    7 PSPPPAPAAAPSDKTGKATAVISFSPSWEDQEVSIPDMSAWLAKLSLTEK-EASKDQEQEQFDDRDKRSDIRTAAPSTPPLVPPFIPRASKTKTRQRPKPEPPGRAPVTPVQRSKPSQQPSQATPSPNLSRYGADLGDIRDVVRDLPPEDILAHGLYLWGFPPSSSSTTEREVLVSPWTDVGALITWLPPHDACAVAMFYSIPVANRALRQVHAPTGVTAQSLKRAAASVQQQALAVP-TVP 247
            P+ P   ++      GK  A  S S +WED++ ++PD++A L+KLSL +  +ASK++   +    ++ + I T  P++    P       + + R+ P+     R   T    S+  +  ++ T SP LSRYG DLG++ DVVRDLP  DILAHGLYL GFP +SS   ER+ LVSPWT VGA+I WL P ++ AVAMFYSI  ANRALR+V +  GV  QSLK A  SVQ++AL+   T+P
Sbjct:   12 PAGPNESSSNEKPVKGKGGAASSPS-TWEDEDATVPDITAELSKLSLDKTGQASKNRFTRRGQAIERWASIPTTLPASESKPP------GQREQREHPRTPVQHRHSPTTQISSQAQKTKARVTSSPTLSRYGVDLGNLSDVVRDLPATDILAHGLYLSGFPHTSSEP-ERQALVSPWTKVGAMIIWLSPRNSHAVAMFYSIATANRALRKVESQGGVKVQSLKDATPSVQREALSAGLTIP 245
The following BLAST results are available for this feature:
BLAST of NO03G04750.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29898.15.300e-3443.80hypothetical protein Naga_100035g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04750NO03G04750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04750.2NO03G04750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04750.2.cds1NO03G04750.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04750.2.cds2NO03G04750.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04750.2.cds3NO03G04750.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04750.2 ID=NO03G04750.2|Name=NO03G04750.2|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp
TGATTGCCCTGCCCATGAGGTTGTGATACTCAACATGGTACAGCAGTTCC
GTCCTTCTTCAGCATGCGCTATGAAACCCTCCCCGAGTATGCACTCTGAA
GAAACAACAAGTCATGTCATTTGCCAGCAGTCTCTGTCTTGCAACAACAG
GTTCTAAGCAGTCTGTCCATCATATGACTCCGTGCCTTCACCATTCCCAC
AAACAGGGTCACCTGGCTCCTGCCCCTTTGGTACATGTTGTCACGTCGAA
AGGACTACTAGGCAAGCAAATCCATACATAGACTGCCTACCCTTCATTCC
TCTCCCACGATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGC
AGCAGCACCATCGGACAAGACAGGGAAGGCCACGGCTGTGATATCGTTCT
CACCGTCGTGGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTTGG
CTGGCGAAGCTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCA
GGAGCAGTTCGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCAC
CATCAACCCCTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACC
AAGACAAGACAACGACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGAC
ACCTGTACAACGCAGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTT
CCCCAAACTTAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGACGTG
GTTCGCGACCTTCCCCCGGAGGACATCTTGGCCCATGGCCTCTATCTCTG
GGGCTTTCCCCCATCCTCTTCCTCGACCACAGAGCGGGAGGTGCTAGTCA
GTCCATGGACGGATGTCGGGGCACTCATCACGTGGTTGCCACCGCATGAT
GCTTGTGCGGTGGCCATGTTCTATTCTATCCCGGTAGCTAATCGTGCGTT
GCGGCAAGTCCATGCGCCGACAGGGGTGACGGCACAGAGTCTGAAAAGGG
CTGCGGCATCGGTCCAGCAACAGGCATTAGCAGTACCAACAGTCCCACAT
ACGCGTCGACAGCGGGACTGGCTATCCCGCCACGCCCCAAGGGCGACACT
GCCGTGCCCTCTCGTCTCATCCTGGGGGCGCTTGGCATTCGTTCCCCCAG
CAGTACCCGACCTGCCATCGGCAGTGTGTCGGTTGGTGGGGTAAGACGGT
CAAGCAGGATACGTGAGCAGCAGGAGGCAGCGGCGGCGGGAACGAGGAAA
CTCGAAGAGGGAAACGGCGGGGGATCGTGCTCGCAGGGTGAGGGATAAAT
GGGTCGAGGGAACTGACCAAGTGAAGACATGTAAAGACAAATAAATATAA
AGAGTAGTAGTATTTCCCCCC
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protein sequence of NO03G04750.2

>NO03G04750.2-protein ID=NO03G04750.2-protein|Name=NO03G04750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MADDAIPSPPPAPAAAPSDKTGKATAVISFSPSWEDQEVSIPDMSAWLAK
LSLTEKEASKDQEQEQFDDRDKRSDIRTAAPSTPPLVPPFIPRASKTKTR
QRPKPEPPGRAPVTPVQRSKPSQQPSQATPSPNLSRYGADLGDIRDVVRD
LPPEDILAHGLYLWGFPPSSSSTTEREVLVSPWTDVGALITWLPPHDACA
VAMFYSIPVANRALRQVHAPTGVTAQSLKRAAASVQQQALAVPTVPHTRR
QRDWLSRHAPRATLPCPLVSSWGRLAFVPPAVPDLPSAVCRLVG*
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mRNA from alignment at chr3:1351354..1353043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04750.2 ID=NO03G04750.2|Name=NO03G04750.2|organism=Nannochloropsis oceanica|type=mRNA|length=1690bp|location=Sequence derived from alignment at chr3:1351354..1353043+ (Nannochloropsis oceanica)
TGATTGCCCTGCCCATGAGGTTGTGATACTCAACATGGTACAGCAGTTCC
GTCCTTCTTCAGCATGCGCTATGAAACCCTCCCCGAGTATGCACTCTGAA
GAAACAACAAGTCATGTCATTTGCCAGCAGTCTCTGTCTTGCAACAACAG
GTTCTAAGCAGTCTGTCCATCATATGACTCCGTGCCTTCACCATTCCCAC
AAACAGGGTCACCTGGCTCCTGCCCCTTTGGTACATGTTGTCACGTCGAA
AGGACTACTAGGCAAGCAAATCCATACATAGACTGCCTACCCTTCATTCC
TCTCCCACGATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGC
AGCAGCACCATCGGACAAGACAGGGAAGGCCACGGCTGTGATATCGTTCT
CACCGTCGTGGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTTGG
CTGGCGAAGCTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCA
GGAGCAGTTCGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCAC
CATCAACCCCTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACC
AAGACAAGACAACGACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGAC
ACCTGTACAACGCAGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTT
CCCCAAACTTAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGGTATA
TTTGACCGATCAAAATGTTGTGAGCGACGGAAAGATTCATTTCGAGGGTA
TCCTTTGGATGACGGAAGTAGCTTTATCCACTCTCCTCTTCTGATGTCCT
CCCAAGGCGCACCACACGTGAGCCTGTCCTCTCTCATTCTCCACCACGAC
CTTCACAGCCTATTCACCTGGTACTATTCCTTTCTCTCTTCCAACGACTG
TTATCTCATATACATGTACAAACAAATGGATAGACGTGGTTCGCGACCTT
CCCCCGGAGGACATCTTGGCCCATGGCCTCTATCTCTGGGGCTTTCCCCC
ATCCTCTTCCTCGACCACAGAGCGGGAGGTGCTAGTCAGTCCATGGACGG
ATGTCGGGGCACTCATCACGTGGTTGCCACCGCATGATGCTTGTGCGGTG
GCCATGTTCTATTCTATCCCGGTAGCTAATCGTGCGTTGCGGCAAGTCCA
TGCGCCGACAGGGGTGACGGCACAGAGTCTGAAAAGGGCTGCGGCATCGG
TCCAGCAACAGGCATTAGCAGGTAAGATGAATTGAAAAGTGAGGAAAGAT
GACTGGAGGAAAGACATGAAGTCAAATGAAAATATTCTGTAAATGTCGAA
AGTACCAACAGTCCCACATACGCGTCGACAGCGGGACTGGCTATCCCGCC
ACGCCCCAAGGGCGACACTGCCGTGCCCTCTCGTCTCATCCTGGGGGCGC
TTGGCATTCGTTCCCCCAGCAGTACCCGACCTGCCATCGGCAGTGTGTCG
GTTGGTGGGGTAAGACGGTCAAGCAGGATACGTGAGCAGCAGGAGGCAGC
GGCGGCGGGAACGAGGAAACTCGAAGAGGGAAACGGCGGGGGATCGTGCT
CGCAGGGTGAGGGATAAATGGGTCGAGGGAACTGACCAAGTGAAGACATG
TAAAGACAAATAAATATAAAGAGTAGTAGTATTTCCCCCC
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Coding sequence (CDS) from alignment at chr3:1351354..1353043+

>NO03G04750.2 ID=NO03G04750.2|Name=NO03G04750.2|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr3:1351354..1353043+ (Nannochloropsis oceanica)
ATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGCAGCAGCACC
ATCGGACAAGACAGGGAAGGCCACGGCTGTGATATCGTTCTCACCGTCGT
GGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTTGGCTGGCGAAG
CTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCAGGAGCAGTT
CGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCACCATCAACCC
CTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACCAAGACAAGA
CAACGACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGACACCTGTACA
ACGCAGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTTCCCCAAACT
TAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGACGTGGTTCGCGAC
CTTCCCCCGGAGGACATCTTGGCCCATGGCCTCTATCTCTGGGGCTTTCC
CCCATCCTCTTCCTCGACCACAGAGCGGGAGGTGCTAGTCAGTCCATGGA
CGGATGTCGGGGCACTCATCACGTGGTTGCCACCGCATGATGCTTGTGCG
GTGGCCATGTTCTATTCTATCCCGGTAGCTAATCGTGCGTTGCGGCAAGT
CCATGCGCCGACAGGGGTGACGGCACAGAGTCTGAAAAGGGCTGCGGCAT
CGGTCCAGCAACAGGCATTAGCAGTACCAACAGTCCCACATACGCGTCGA
CAGCGGGACTGGCTATCCCGCCACGCCCCAAGGGCGACACTGCCGTGCCC
TCTCGTCTCATCCTGGGGGCGCTTGGCATTCGTTCCCCCAGCAGTACCCG
ACCTGCCATCGGCAGTGTGTCGGTTGGTGGGGTAA
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Synonyms
Publications