NO03G04690, NO03G04690 (gene) Nannochloropsis oceanica

Overview
NameNO03G04690
Unique NameNO03G04690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1997
Alignment locationchr3:1338635..1340631 +

Link to JBrowse

Properties
Property NameValue
DescriptionCDP-diacylglycerol pyrophosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1338635..1340631 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04690 vs. NCBI_GenBank
Match: EWM29911.1 (CDP-diacylglycerol pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 589.0 bits (1517), Expect = 1.500e-164
Identity = 297/493 (60.24%), Postives = 341/493 (69.17%), Query Frame = 0 
Query:   17 VFILLSQPRPCSSFSSLCRSFLPDPGAFSNEVQCNDKGINWPQDRQYCLPENWGLQCGTCLQTCYFLPTVNNTVFMPFKYTFPSLESFAQTCDTRTVGKSYNESTLGIYCCRPCKLYRLVNERCGSIHSTAAGHDQSCFLENTTTQAGLPTLRTQSSLDNTEANPHWLFIPPTPNRGIEDARTNASMFKQAWRLAMDPLSYTSPIIKYSSGKGDKRQHFAAKSFIFDDKQDEMQRHYFNTSIIPGKMGLTNVAIGINQANHRSQHHAHIHYAAFPISFRKHLLDQANVPPSASSGHPTCTVASGLKYGEKNVTYYAWFFPWDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWTLRDLALRQCPPLLDTLVKDMEGNTIVRPPTLPFSPPTSNPFQGDEDFLMSQIAAIIAPSFSLDSSTQRPSGHYVLMGSTSSNFHAESLLCTQYGTDDDSTGAGGXXXXXXXGKGGWDPVTDCPATAEGWPKPERGGR 510
            +F+LL   RPC SFSSLCRSFLPD G+FSNEVQCND+GI WP + QYCLPENWGLQCGTCLQTCYF+PT N++ F+PFKYTFPSL+SFAQTCD RT G +YNES LG+YCCRPCKLYRL+ E C ++H T  G DQ+CF EN  TQAGL  LR QSSLDN+E  PHWLFIPP PNRGIED RT+AS+F+QAWRLAMDP  Y  PI+  S G               D  Q       FN+S+IPGKMG TNVAIGINQA+ R+QH AHIHYAA PI FR+HL + A +P    SG  TCTV SG  YGE+NVTY+ W FPWDLA                             +WTLR+L L  CP LLDTLVKD  G  I+ PPTLP +P  S+PF    DF M+Q+A IIAP+ +LD +TQRPSGHYVLMGST++ FHAESLLCTQ   D    G G         K GWDPVTDCP TA+ WP+PE GGR
Sbjct:   33 LFLLLC--RPCLSFSSLCRSFLPDTGSFSNEVQCNDRGIKWPLEFQYCLPENWGLQCGTCLQTCYFIPTFNDSYFLPFKYTFPSLKSFAQTCDVRTKGNNYNESDLGVYCCRPCKLYRLITEHCDAVHKTQNGEDQTCFEENKNTQAGLTFLRAQSSLDNSEETPHWLFIPPAPNRGIEDTRTDASLFQQAWRLAMDPSQYLKPIVHKSHGA--------------DGAQ------LFNSSVIPGKMGRTNVAIGINQADLRTQHQAHIHYAALPIPFRRHLNENARIP----SGLKTCTVVSGFMYGEQNVTYFGWLFPWDLA--------LLPEGKKYQAEKNKTGDVTAPLWTLRNLVLDMCPQLLDTLVKDALGMPILDPPTLPHAPVGSHPFAHAGDFQMAQVAVIIAPTTTLDPNTQRPSGHYVLMGSTATRFHAESLLCTQAAID----GIG--------SKKGWDPVTDCPVTAKEWPEPE-GGR 478
[Close]
BLAST of NO03G04690 vs. NCBI_GenBank
Match: EWM29910.1 (CDP-diacylglycerol pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 524.2 bits (1349), Expect = 4.500e-145
Identity = 276/493 (55.98%), Postives = 315/493 (63.89%), Query Frame = 0 
Query:   17 VFILLSQPRPCSSFSSLCRSFLPDPGAFSNEVQCNDKGINWPQDRQYCLPENWGLQCGTCLQTCYFLPTVNNTVFMPFKYTFPSLESFAQTCDTRTVGKSYNESTLGIYCCRPCKLYRLVNERCGSIHSTAAGHDQSCFLENTTTQAGLPTLRTQSSLDNTEANPHWLFIPPTPNRGIEDARTNASMFKQAWRLAMDPLSYTSPIIKYSSGKGDKRQHFAAKSFIFDDKQDEMQRHYFNTSIIPGKMGLTNVAIGINQANHRSQHHAHIHYAAFPISFRKHLLDQANVPPSASSGHPTCTVASGLKYGEKNVTYYAWFFPWDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWTLRDLALRQCPPLLDTLVKDMEGNTIVRPPTLPFSPPTSNPFQGDEDFLMSQIAAIIAPSFSLDSSTQRPSGHYVLMGSTSSNFHAESLLCTQYGTDDDSTGAGGXXXXXXXGKGGWDPVTDCPATAEGWPKPERGGR 510
            +F+LL   RPC SFSSLCRSFLPD G+FSNEVQCND+GI WP + QYCLPENWGLQCG                            SFAQTCD RT G +YNES LG+YCCRPCKLYRL+ E C ++H T  G DQ+CF EN  TQAGL  LR QSSLDN+E  PHWLFIPP PNRGIED RT+AS+F+QAWRLAMDP  Y  PI+  S G               D  Q       FN+S+IPGKMG TNVAIGINQA+ R+QH AHIHYAA PI FR+HL + A +P    SG  TCTV SG  YGE+NVTY+ W FPWDLA                             +WTLR+L L  CP LLDTLVKD  G  I+ PPTLP +P  S+PF    DF M+Q+A IIAP+ +LD +TQRPSGHYVLMGST++ FHAESLLCTQ   D    G G         K GWDPVTDCP TA+ WP+PE GGR
Sbjct:   33 LFLLLC--RPCLSFSSLCRSFLPDTGSFSNEVQCNDRGIKWPLEFQYCLPENWGLQCG----------------------------SFAQTCDVRTKGNNYNESDLGVYCCRPCKLYRLITEHCDAVHKTQNGEDQTCFEENKNTQAGLTFLRAQSSLDNSEETPHWLFIPPAPNRGIEDTRTDASLFQQAWRLAMDPSQYLKPIVHKSHGA--------------DGAQ------LFNSSVIPGKMGRTNVAIGINQADLRTQHQAHIHYAALPIPFRRHLNENARIP----SGLKTCTVVSGFMYGEQNVTYFGWLFPWDLA--------LLPEGKKYQAEKNKTGDVTAPLWTLRNLVLDMCPQLLDTLVKDALGMPILDPPTLPHAPVGSHPFAHAGDFQMAQVAVIIAPTTTLDPNTQRPSGHYVLMGSTATRFHAESLLCTQAAID----GIG--------SKKGWDPVTDCPVTAKEWPEPE-GGR 450
The following BLAST results are available for this feature:
BLAST of NO03G04690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29911.11.500e-16460.24CDP-diacylglycerol pyrophosphatase [Nannochloropsi... [more]
EWM29910.14.500e-14555.98CDP-diacylglycerol pyrophosphatase [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005415NSK005415Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04690.1NO03G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100035g27gene732Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04690.1NO03G04690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04690 ID=NO03G04690|Name=NO03G04690|organism=Nannochloropsis oceanica|type=gene|length=1997bp
CGTTACGTTTGCTTTCTCGTGTTTGCCATCCCTCGCTCTGCAAAAGCCAT
GCACGCAAAAGACCCACAACTCGGCCACACAAACACACTGCAGTCAAAGC
CGGGGTCTGCTGCCGGCAGATGCCGGGCTTGAGAACGGCTAGTCGAATCG
CTCTCCTTCCATGCTTCGTCTTCATTCTCCTTTCGCAGCCACGTCCCTGC
AGTTCCTTCTCCAGTCTGTGCCGCAGTTTTTTGCCTGACCCTGGCGCGTT
TTCAAACGAGGTCCAATGCAATGACAAAGGTATAAATTGGCCACAGGATC
GTCAATATTGCCTGCCGGAAAATTGGGGGCTGCAATGCGGGgtaggttat
ctaagaaaggatcgtcactggcttgtaaagggaaggacttcggcactctc
cttcccctatctctttatagctgagagcacacatcatgtgtaatataagg
cagtgtattacgtcttaagatgtgcatctcatcatcaacccctttcctgc
cttccccccatttcagACATGCCTCCAAACGTGCTACTTCCTCCCCACCG
TCAACAACACCGTCTTCATGCCCTTCAAGTACACCTTTCCCTCCCTTGAA
TCGTTCGCACAGACCTGTGATACTCGCACTGTGGGTAAAAGTTATAATGA
GAGTACGCTGGGCATTTACTGTTGTCGGCCCTGCAAGCTCTATCGCCTTG
TCAACGAGCGCTGTGGCTCCATCCATTCCACCGCGGCCGGGCACGATCAA
AGCTGCTTCCTTGAGAACACTACAACTCAAGCTGGTTTACCCACTCTCCG
CACGCAAAGCAGTTTGGACAACACGGAGGCAAACCCTCATTGGCTTTTTA
TCCCTCCTACTCCGAACCGTGGGATTGAGGATGCGCGGACCAACGCCTCC
ATGTTTAAACAAGCCTGGCGTTTGGCCATGGACCCCTTAAGCTACACCTC
TCCTATAATTAAATATAGCAGCGGCAAGGGCGATAAGCGGCAGCATTTTG
CCGCAAAATCTTTCATCTTCGACGACAAACAGGACGAAATGCAGCGGCAT
TATTTTAACACTTCCATTATTCCTGGCAAGATGGGGTTGACGAACGTGGC
CATCGGCATCAATCAAGCCAATCACCGCTCGCAACACCATGCCCACATTC
ACTATGCGGCTTTTCCTATCTCCTTCCGCAAACATCTGCTAGATCAAGCA
AATGTGCCGCCATCCGCATCATCAGGACATCCAACGTGTACAGTAGCATC
CGGCCTGAAATATGGTGAAAAGAACGTGACTTACTATGCGTGGTTCTTTC
CTTGGGACCTTGCAACTACTGCTGCGGGGGAAGAATCAGGAGGAGGAAGT
AGGGAGGAGAAAGTAGGAGGAATAGAAAGAGGAGGCGGGGGAGGGGGAGG
GATGTGGACGCTACGCGATCTGGCGTTGCGACAGTGTCCCCCTCTGCTCG
ACACACTTGTCAAGGACATGGAGGGCAACACAATCGTCCGCCCGCCTACA
CTCCCCTTCTCTCCACCTACCTCTAACCCTTTTCAGGGCGATGAAGATTT
TTTGATGAGTCAAATTGCTGCTATTATCGCACCCTCTTTCTCGCTCGATT
CAAGCACGCAACGTCCTTCGGGTCACTACGTGTTAATGGGGTCGACGAGT
TCAAACTTTCATGCGGAGAGTTTGCTATGCACTCAATATGGGACTGATGA
TGATAGTACAGGTGCTGGAGGTCAGCGAGGAGGAGGAGGAGAAGGAAAAG
GAGGGTGGGATCCCGTGACGGACTGTCCGGCTACTGCGGAGGGTTGGCCG
AAGCCGGAAAGGGGGGGAAGGAAGGGGGCGAGGGGGAAAAGACGGTGGTG
AAGGTAACGGTGAAGGGGAAGGCTATTTTGGACAAGGGAGGTGGGGAGAT
ATGAGGTCTCTTGGTGAGGCGCGGGTGGTGATTGAACAAATAGAGTGACC
AAATTCAACGAAAATTCCGGAAAATTCAGACGACACGTCAACAAATT
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protein sequence of NO03G04690.1

>NO03G04690.1-protein ID=NO03G04690.1-protein|Name=NO03G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MPGLRTASRIALLPCFVFILLSQPRPCSSFSSLCRSFLPDPGAFSNEVQC
NDKGINWPQDRQYCLPENWGLQCGTCLQTCYFLPTVNNTVFMPFKYTFPS
LESFAQTCDTRTVGKSYNESTLGIYCCRPCKLYRLVNERCGSIHSTAAGH
DQSCFLENTTTQAGLPTLRTQSSLDNTEANPHWLFIPPTPNRGIEDARTN
ASMFKQAWRLAMDPLSYTSPIIKYSSGKGDKRQHFAAKSFIFDDKQDEMQ
RHYFNTSIIPGKMGLTNVAIGINQANHRSQHHAHIHYAAFPISFRKHLLD
QANVPPSASSGHPTCTVASGLKYGEKNVTYYAWFFPWDLATTAAGEESGG
GSREEKVGGIERGGGGGGGMWTLRDLALRQCPPLLDTLVKDMEGNTIVRP
PTLPFSPPTSNPFQGDEDFLMSQIAAIIAPSFSLDSSTQRPSGHYVLMGS
TSSNFHAESLLCTQYGTDDDSTGAGGQRGGGGEGKGGWDPVTDCPATAEG
WPKPERGGRKGARGKRRW*
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Synonyms
Publications