NO03G04690.1, NO03G04690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04690.1
Unique NameNO03G04690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1822
Alignment locationchr3:1338635..1340631 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1338635..1340631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04690.1 vs.
Match: EWM29911.1 (CDP-diacylglycerol pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 598.6 bits (1542), Expect = 1.900e-167
Identity = 297/493 (60.24%), Postives = 349/493 (70.79%), Query Frame = 0 
Query:   17 VFILLSQPRPCSSFSSLCRSFLPDPGAFSNEVQCNDKGINWPQDRQYCLPENWGLQCGTCLQTCYFLPTVNNTVFMPFKYTFPSLESFAQTCDTRTVGKSYNESTLGIYCCRPCKLYRLVNERCGSIHSTAAGHDQSCFLENTTTQAGLPTLRTQSSLDNTEANPHWLFIPPTPNRGIEDARTNASMFKQAWRLAMDPLSYTSPIIKYSSGKGDKRQHFAAKSFIFDDKQDEMQRHYFNTSIIPGKMGLTNVAIGINQANHRSQHHAHIHYAAFPISFRKHLLDQANVPPSASSGHPTCTVASGLKYGEKNVTYYAWFFPWDLATTAAGEESGGGSREEKVGGIERGGGGGGGMWTLRDLALRQCPPLLDTLVKDMEGNTIVRPPTLPFSPPTSNPFQGDEDFLMSQIAAIIAPSFSLDSSTQRPSGHYVLMGSTSSNFHAESLLCTQYGTDDDSTGAGGQRGGGGEGKGGWDPVTDCPATAEGWPKPERGGR 510
            +F+LL   RPC SFSSLCRSFLPD G+FSNEVQCND+GI WP + QYCLPENWGLQCGTCLQTCYF+PT N++ F+PFKYTFPSL+SFAQTCD RT G +YNES LG+YCCRPCKLYRL+ E C ++H T  G DQ+CF EN  TQAGL  LR QSSLDN+E  PHWLFIPP PNRGIED RT+AS+F+QAWRLAMDP  Y  PI+  S G    +                     FN+S+IPGKMG TNVAIGINQA+ R+QH AHIHYAA PI FR+HL + A +P    SG  TCTV SG  YGE+NVTY+ W FPWDLA    G++    + + K G +         +WTLR+L L  CP LLDTLVKD  G  I+ PPTLP +P  S+PF    DF M+Q+A IIAP+ +LD +TQRPSGHYVLMGST++ FHAESLLCTQ   D    G G ++G        WDPVTDCP TA+ WP+PE GGR
Sbjct:   33 LFLLLC--RPCLSFSSLCRSFLPDTGSFSNEVQCNDRGIKWPLEFQYCLPENWGLQCGTCLQTCYFIPTFNDSYFLPFKYTFPSLKSFAQTCDVRTKGNNYNESDLGVYCCRPCKLYRLITEHCDAVHKTQNGEDQTCFEENKNTQAGLTFLRAQSSLDNSEETPHWLFIPPAPNRGIEDTRTDASLFQQAWRLAMDPSQYLKPIVHKSHGADGAQ--------------------LFNSSVIPGKMGRTNVAIGINQADLRTQHQAHIHYAALPIPFRRHLNENARIP----SGLKTCTVVSGFMYGEQNVTYFGWLFPWDLALLPEGKKYQ--AEKNKTGDVT------APLWTLRNLVLDMCPQLLDTLVKDALGMPILDPPTLPHAPVGSHPFAHAGDFQMAQVAVIIAPTTTLDPNTQRPSGHYVLMGSTATRFHAESLLCTQAAID----GIGSKKG--------WDPVTDCPVTAKEWPEPE-GGR 478
The following BLAST results are available for this feature:
BLAST of NO03G04690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29911.11.900e-16760.24CDP-diacylglycerol pyrophosphatase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04690NO03G04690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04690.1NO03G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04690.1.cds1NO03G04690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04690.1.cds2NO03G04690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04690.1 ID=NO03G04690.1|Name=NO03G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1822bp
CGTTACGTTTGCTTTCTCGTGTTTGCCATCCCTCGCTCTGCAAAAGCCAT
GCACGCAAAAGACCCACAACTCGGCCACACAAACACACTGCAGTCAAAGC
CGGGGTCTGCTGCCGGCAGATGCCGGGCTTGAGAACGGCTAGTCGAATCG
CTCTCCTTCCATGCTTCGTCTTCATTCTCCTTTCGCAGCCACGTCCCTGC
AGTTCCTTCTCCAGTCTGTGCCGCAGTTTTTTGCCTGACCCTGGCGCGTT
TTCAAACGAGGTCCAATGCAATGACAAAGGTATAAATTGGCCACAGGATC
GTCAATATTGCCTGCCGGAAAATTGGGGGCTGCAATGCGGGACATGCCTC
CAAACGTGCTACTTCCTCCCCACCGTCAACAACACCGTCTTCATGCCCTT
CAAGTACACCTTTCCCTCCCTTGAATCGTTCGCACAGACCTGTGATACTC
GCACTGTGGGTAAAAGTTATAATGAGAGTACGCTGGGCATTTACTGTTGT
CGGCCCTGCAAGCTCTATCGCCTTGTCAACGAGCGCTGTGGCTCCATCCA
TTCCACCGCGGCCGGGCACGATCAAAGCTGCTTCCTTGAGAACACTACAA
CTCAAGCTGGTTTACCCACTCTCCGCACGCAAAGCAGTTTGGACAACACG
GAGGCAAACCCTCATTGGCTTTTTATCCCTCCTACTCCGAACCGTGGGAT
TGAGGATGCGCGGACCAACGCCTCCATGTTTAAACAAGCCTGGCGTTTGG
CCATGGACCCCTTAAGCTACACCTCTCCTATAATTAAATATAGCAGCGGC
AAGGGCGATAAGCGGCAGCATTTTGCCGCAAAATCTTTCATCTTCGACGA
CAAACAGGACGAAATGCAGCGGCATTATTTTAACACTTCCATTATTCCTG
GCAAGATGGGGTTGACGAACGTGGCCATCGGCATCAATCAAGCCAATCAC
CGCTCGCAACACCATGCCCACATTCACTATGCGGCTTTTCCTATCTCCTT
CCGCAAACATCTGCTAGATCAAGCAAATGTGCCGCCATCCGCATCATCAG
GACATCCAACGTGTACAGTAGCATCCGGCCTGAAATATGGTGAAAAGAAC
GTGACTTACTATGCGTGGTTCTTTCCTTGGGACCTTGCAACTACTGCTGC
GGGGGAAGAATCAGGAGGAGGAAGTAGGGAGGAGAAAGTAGGAGGAATAG
AAAGAGGAGGCGGGGGAGGGGGAGGGATGTGGACGCTACGCGATCTGGCG
TTGCGACAGTGTCCCCCTCTGCTCGACACACTTGTCAAGGACATGGAGGG
CAACACAATCGTCCGCCCGCCTACACTCCCCTTCTCTCCACCTACCTCTA
ACCCTTTTCAGGGCGATGAAGATTTTTTGATGAGTCAAATTGCTGCTATT
ATCGCACCCTCTTTCTCGCTCGATTCAAGCACGCAACGTCCTTCGGGTCA
CTACGTGTTAATGGGGTCGACGAGTTCAAACTTTCATGCGGAGAGTTTGC
TATGCACTCAATATGGGACTGATGATGATAGTACAGGTGCTGGAGGTCAG
CGAGGAGGAGGAGGAGAAGGAAAAGGAGGGTGGGATCCCGTGACGGACTG
TCCGGCTACTGCGGAGGGTTGGCCGAAGCCGGAAAGGGGGGGAAGGAAGG
GGGCGAGGGGGAAAAGACGGTGGTGAAGGTAACGGTGAAGGGGAAGGCTA
TTTTGGACAAGGGAGGTGGGGAGATATGAGGTCTCTTGGTGAGGCGCGGG
TGGTGATTGAACAAATAGAGTGACCAAATTCAACGAAAATTCCGGAAAAT
TCAGACGACACGTCAACAAATT
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protein sequence of NO03G04690.1

>NO03G04690.1-protein ID=NO03G04690.1-protein|Name=NO03G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MPGLRTASRIALLPCFVFILLSQPRPCSSFSSLCRSFLPDPGAFSNEVQC
NDKGINWPQDRQYCLPENWGLQCGTCLQTCYFLPTVNNTVFMPFKYTFPS
LESFAQTCDTRTVGKSYNESTLGIYCCRPCKLYRLVNERCGSIHSTAAGH
DQSCFLENTTTQAGLPTLRTQSSLDNTEANPHWLFIPPTPNRGIEDARTN
ASMFKQAWRLAMDPLSYTSPIIKYSSGKGDKRQHFAAKSFIFDDKQDEMQ
RHYFNTSIIPGKMGLTNVAIGINQANHRSQHHAHIHYAAFPISFRKHLLD
QANVPPSASSGHPTCTVASGLKYGEKNVTYYAWFFPWDLATTAAGEESGG
GSREEKVGGIERGGGGGGGMWTLRDLALRQCPPLLDTLVKDMEGNTIVRP
PTLPFSPPTSNPFQGDEDFLMSQIAAIIAPSFSLDSSTQRPSGHYVLMGS
TSSNFHAESLLCTQYGTDDDSTGAGGQRGGGGEGKGGWDPVTDCPATAEG
WPKPERGGRKGARGKRRW*
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mRNA from alignment at chr3:1338635..1340631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04690.1 ID=NO03G04690.1|Name=NO03G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp|location=Sequence derived from alignment at chr3:1338635..1340631+ (Nannochloropsis oceanica)
CGTTACGTTTGCTTTCTCGTGTTTGCCATCCCTCGCTCTGCAAAAGCCAT
GCACGCAAAAGACCCACAACTCGGCCACACAAACACACTGCAGTCAAAGC
CGGGGTCTGCTGCCGGCAGATGCCGGGCTTGAGAACGGCTAGTCGAATCG
CTCTCCTTCCATGCTTCGTCTTCATTCTCCTTTCGCAGCCACGTCCCTGC
AGTTCCTTCTCCAGTCTGTGCCGCAGTTTTTTGCCTGACCCTGGCGCGTT
TTCAAACGAGGTCCAATGCAATGACAAAGGTATAAATTGGCCACAGGATC
GTCAATATTGCCTGCCGGAAAATTGGGGGCTGCAATGCGGGGTAGGTTAT
CTAAGAAAGGATCGTCACTGGCTTGTAAAGGGAAGGACTTCGGCACTCTC
CTTCCCCTATCTCTTTATAGCTGAGAGCACACATCATGTGTAATATAAGG
CAGTGTATTACGTCTTAAGATGTGCATCTCATCATCAACCCCTTTCCTGC
CTTCCCCCCATTTCAGACATGCCTCCAAACGTGCTACTTCCTCCCCACCG
TCAACAACACCGTCTTCATGCCCTTCAAGTACACCTTTCCCTCCCTTGAA
TCGTTCGCACAGACCTGTGATACTCGCACTGTGGGTAAAAGTTATAATGA
GAGTACGCTGGGCATTTACTGTTGTCGGCCCTGCAAGCTCTATCGCCTTG
TCAACGAGCGCTGTGGCTCCATCCATTCCACCGCGGCCGGGCACGATCAA
AGCTGCTTCCTTGAGAACACTACAACTCAAGCTGGTTTACCCACTCTCCG
CACGCAAAGCAGTTTGGACAACACGGAGGCAAACCCTCATTGGCTTTTTA
TCCCTCCTACTCCGAACCGTGGGATTGAGGATGCGCGGACCAACGCCTCC
ATGTTTAAACAAGCCTGGCGTTTGGCCATGGACCCCTTAAGCTACACCTC
TCCTATAATTAAATATAGCAGCGGCAAGGGCGATAAGCGGCAGCATTTTG
CCGCAAAATCTTTCATCTTCGACGACAAACAGGACGAAATGCAGCGGCAT
TATTTTAACACTTCCATTATTCCTGGCAAGATGGGGTTGACGAACGTGGC
CATCGGCATCAATCAAGCCAATCACCGCTCGCAACACCATGCCCACATTC
ACTATGCGGCTTTTCCTATCTCCTTCCGCAAACATCTGCTAGATCAAGCA
AATGTGCCGCCATCCGCATCATCAGGACATCCAACGTGTACAGTAGCATC
CGGCCTGAAATATGGTGAAAAGAACGTGACTTACTATGCGTGGTTCTTTC
CTTGGGACCTTGCAACTACTGCTGCGGGGGAAGAATCAGGAGGAGGAAGT
AGGGAGGAGAAAGTAGGAGGAATAGAAAGAGGAGGCGGGGGAGGGGGAGG
GATGTGGACGCTACGCGATCTGGCGTTGCGACAGTGTCCCCCTCTGCTCG
ACACACTTGTCAAGGACATGGAGGGCAACACAATCGTCCGCCCGCCTACA
CTCCCCTTCTCTCCACCTACCTCTAACCCTTTTCAGGGCGATGAAGATTT
TTTGATGAGTCAAATTGCTGCTATTATCGCACCCTCTTTCTCGCTCGATT
CAAGCACGCAACGTCCTTCGGGTCACTACGTGTTAATGGGGTCGACGAGT
TCAAACTTTCATGCGGAGAGTTTGCTATGCACTCAATATGGGACTGATGA
TGATAGTACAGGTGCTGGAGGTCAGCGAGGAGGAGGAGGAGAAGGAAAAG
GAGGGTGGGATCCCGTGACGGACTGTCCGGCTACTGCGGAGGGTTGGCCG
AAGCCGGAAAGGGGGGGAAGGAAGGGGGCGAGGGGGAAAAGACGGTGGTG
AAGGTAACGGTGAAGGGGAAGGCTATTTTGGACAAGGGAGGTGGGGAGAT
ATGAGGTCTCTTGGTGAGGCGCGGGTGGTGATTGAACAAATAGAGTGACC
AAATTCAACGAAAATTCCGGAAAATTCAGACGACACGTCAACAAATT
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Coding sequence (CDS) from alignment at chr3:1338635..1340631+

>NO03G04690.1 ID=NO03G04690.1|Name=NO03G04690.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr3:1338635..1340631+ (Nannochloropsis oceanica)
ATGCCGGGCTTGAGAACGGCTAGTCGAATCGCTCTCCTTCCATGCTTCGT
CTTCATTCTCCTTTCGCAGCCACGTCCCTGCAGTTCCTTCTCCAGTCTGT
GCCGCAGTTTTTTGCCTGACCCTGGCGCGTTTTCAAACGAGGTCCAATGC
AATGACAAAGGTATAAATTGGCCACAGGATCGTCAATATTGCCTGCCGGA
AAATTGGGGGCTGCAATGCGGGACATGCCTCCAAACGTGCTACTTCCTCC
CCACCGTCAACAACACCGTCTTCATGCCCTTCAAGTACACCTTTCCCTCC
CTTGAATCGTTCGCACAGACCTGTGATACTCGCACTGTGGGTAAAAGTTA
TAATGAGAGTACGCTGGGCATTTACTGTTGTCGGCCCTGCAAGCTCTATC
GCCTTGTCAACGAGCGCTGTGGCTCCATCCATTCCACCGCGGCCGGGCAC
GATCAAAGCTGCTTCCTTGAGAACACTACAACTCAAGCTGGTTTACCCAC
TCTCCGCACGCAAAGCAGTTTGGACAACACGGAGGCAAACCCTCATTGGC
TTTTTATCCCTCCTACTCCGAACCGTGGGATTGAGGATGCGCGGACCAAC
GCCTCCATGTTTAAACAAGCCTGGCGTTTGGCCATGGACCCCTTAAGCTA
CACCTCTCCTATAATTAAATATAGCAGCGGCAAGGGCGATAAGCGGCAGC
ATTTTGCCGCAAAATCTTTCATCTTCGACGACAAACAGGACGAAATGCAG
CGGCATTATTTTAACACTTCCATTATTCCTGGCAAGATGGGGTTGACGAA
CGTGGCCATCGGCATCAATCAAGCCAATCACCGCTCGCAACACCATGCCC
ACATTCACTATGCGGCTTTTCCTATCTCCTTCCGCAAACATCTGCTAGAT
CAAGCAAATGTGCCGCCATCCGCATCATCAGGACATCCAACGTGTACAGT
AGCATCCGGCCTGAAATATGGTGAAAAGAACGTGACTTACTATGCGTGGT
TCTTTCCTTGGGACCTTGCAACTACTGCTGCGGGGGAAGAATCAGGAGGA
GGAAGTAGGGAGGAGAAAGTAGGAGGAATAGAAAGAGGAGGCGGGGGAGG
GGGAGGGATGTGGACGCTACGCGATCTGGCGTTGCGACAGTGTCCCCCTC
TGCTCGACACACTTGTCAAGGACATGGAGGGCAACACAATCGTCCGCCCG
CCTACACTCCCCTTCTCTCCACCTACCTCTAACCCTTTTCAGGGCGATGA
AGATTTTTTGATGAGTCAAATTGCTGCTATTATCGCACCCTCTTTCTCGC
TCGATTCAAGCACGCAACGTCCTTCGGGTCACTACGTGTTAATGGGGTCG
ACGAGTTCAAACTTTCATGCGGAGAGTTTGCTATGCACTCAATATGGGAC
TGATGATGATAGTACAGGTGCTGGAGGTCAGCGAGGAGGAGGAGGAGAAG
GAAAAGGAGGGTGGGATCCCGTGACGGACTGTCCGGCTACTGCGGAGGGT
TGGCCGAAGCCGGAAAGGGGGGGAAGGAAGGGGGCGAGGGGGAAAAGACG
GTGGTGA
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Synonyms
Publications