NO03G04640, NO03G04640 (gene) Nannochloropsis oceanica

Overview
NameNO03G04640
Unique NameNO03G04640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length321
Alignment locationchr3:1330734..1331054 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1330734..1331054 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04640 vs. NCBI_GenBank
Match: EWM29916.1 (hypothetical protein Naga_100035g31 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 4.400e-31
Identity = 73/105 (69.52%), Postives = 79/105 (75.24%), Query Frame = 0 
Query:    1 MEIDFPTFCVLFFLASILLAFVELAIKSKPISQADYEKTYGIPPGLDSLNYQNGEWRHKPTGRLATKSEVECAGLVWPTTPVGSKSRTRSSTTGNLETAPGNKKD 106
            MEIDF TFC+LFFLAS LLAFVELAIKS PISQ DYEKTYGIPPGLD L+YQ+G WR+K +GRLATKSE+E AGLVWP T  G K  T  S T N      N  D
Sbjct:    1 MEIDFLTFCILFFLASFLLAFVELAIKSTPISQEDYEKTYGIPPGLDDLDYQDGGWRYKSSGRLATKSEIERAGLVWPKTQPGRKGNTSGSRTNNAPEKQTNVAD 105
The following BLAST results are available for this feature:
BLAST of NO03G04640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29916.14.400e-3169.52hypothetical protein Naga_100035g31 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005420NSK005420Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04640.1NO03G04640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100035g31gene736Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04640.1NO03G04640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04640 ID=NO03G04640|Name=NO03G04640|organism=Nannochloropsis oceanica|type=gene|length=321bp
ATGGAGATCGATTTCCCAACATTTTGTGTCCTGTTTTTCTTGGCCTCAAT
CCTCCTGGCTTTTGTGGAGCTGGCAATCAAGAGCAAACCCATCTCCCAGG
CCGACTACGAAAAGACCTACGGCATACCTCCGGGACTCGACAGCCTCAAT
TACCAGAACGGGGAGTGGAGGCACAAGCCCACCGGCCGGCTGGCCACCAA
AAGTGAGGTGGAATGCGCGGGGCTGGTCTGGCCCACGACGCCGGTCGGAA
GCAAGAGCAGGACACGCAGCTCGACTACAGGGAATTTGGAGACTGCCCCA
GGCAACAAGAAGGACGACTAA
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protein sequence of NO03G04640.1

>NO03G04640.1-protein ID=NO03G04640.1-protein|Name=NO03G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MEIDFPTFCVLFFLASILLAFVELAIKSKPISQADYEKTYGIPPGLDSLN
YQNGEWRHKPTGRLATKSEVECAGLVWPTTPVGSKSRTRSSTTGNLETAP
GNKKDD*
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Synonyms
Publications