NO03G04640.1, NO03G04640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04640.1
Unique NameNO03G04640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length321
Alignment locationchr3:1330734..1331054 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1330734..1331054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04640.1 vs.
Match: EWM29916.1 (hypothetical protein Naga_100035g31 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 4.400e-31
Identity = 73/105 (69.52%), Postives = 79/105 (75.24%), Query Frame = 0
Query:    1 MEIDFPTFCVLFFLASILLAFVELAIKSKPISQADYEKTYGIPPGLDSLNYQNGEWRHKPTGRLATKSEVECAGLVWPTTPVGSKSRTRSSTTGNLETAPGNKKD 106
            MEIDF TFC+LFFLAS LLAFVELAIKS PISQ DYEKTYGIPPGLD L+YQ+G WR+K +GRLATKSE+E AGLVWP T  G K  T  S T N      N  D
Sbjct:    1 MEIDFLTFCILFFLASFLLAFVELAIKSTPISQEDYEKTYGIPPGLDDLDYQDGGWRYKSSGRLATKSEIERAGLVWPKTQPGRKGNTSGSRTNNAPEKQTNVAD 105          
The following BLAST results are available for this feature:
BLAST of NO03G04640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29916.14.400e-3169.52hypothetical protein Naga_100035g31 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04640NO03G04640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04640.1NO03G04640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04640.1.cds1NO03G04640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04640.1 ID=NO03G04640.1|Name=NO03G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=321bp
ATGGAGATCGATTTCCCAACATTTTGTGTCCTGTTTTTCTTGGCCTCAAT
CCTCCTGGCTTTTGTGGAGCTGGCAATCAAGAGCAAACCCATCTCCCAGG
CCGACTACGAAAAGACCTACGGCATACCTCCGGGACTCGACAGCCTCAAT
TACCAGAACGGGGAGTGGAGGCACAAGCCCACCGGCCGGCTGGCCACCAA
AAGTGAGGTGGAATGCGCGGGGCTGGTCTGGCCCACGACGCCGGTCGGAA
GCAAGAGCAGGACACGCAGCTCGACTACAGGGAATTTGGAGACTGCCCCA
GGCAACAAGAAGGACGACTAA
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protein sequence of NO03G04640.1

>NO03G04640.1-protein ID=NO03G04640.1-protein|Name=NO03G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MEIDFPTFCVLFFLASILLAFVELAIKSKPISQADYEKTYGIPPGLDSLN
YQNGEWRHKPTGRLATKSEVECAGLVWPTTPVGSKSRTRSSTTGNLETAP
GNKKDD*
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mRNA from alignment at chr3:1330734..1331054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04640.1 ID=NO03G04640.1|Name=NO03G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=321bp|location=Sequence derived from alignment at chr3:1330734..1331054- (Nannochloropsis oceanica)
ATGGAGATCGATTTCCCAACATTTTGTGTCCTGTTTTTCTTGGCCTCAAT CCTCCTGGCTTTTGTGGAGCTGGCAATCAAGAGCAAACCCATCTCCCAGG CCGACTACGAAAAGACCTACGGCATACCTCCGGGACTCGACAGCCTCAAT TACCAGAACGGGGAGTGGAGGCACAAGCCCACCGGCCGGCTGGCCACCAA AAGTGAGGTGGAATGCGCGGGGCTGGTCTGGCCCACGACGCCGGTCGGAA GCAAGAGCAGGACACGCAGCTCGACTACAGGGAATTTGGAGACTGCCCCA GGCAACAAGAAGGACGACTAA
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Coding sequence (CDS) from alignment at chr3:1330734..1331054-

>NO03G04640.1 ID=NO03G04640.1|Name=NO03G04640.1|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at chr3:1330734..1331054- (Nannochloropsis oceanica)
ATGGAGATCGATTTCCCAACATTTTGTGTCCTGTTTTTCTTGGCCTCAAT
CCTCCTGGCTTTTGTGGAGCTGGCAATCAAGAGCAAACCCATCTCCCAGG
CCGACTACGAAAAGACCTACGGCATACCTCCGGGACTCGACAGCCTCAAT
TACCAGAACGGGGAGTGGAGGCACAAGCCCACCGGCCGGCTGGCCACCAA
AAGTGAGGTGGAATGCGCGGGGCTGGTCTGGCCCACGACGCCGGTCGGAA
GCAAGAGCAGGACACGCAGCTCGACTACAGGGAATTTGGAGACTGCCCCA
GGCAACAAGAAGGACGACTAA
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Synonyms
Publications