NO03G04540, NO03G04540 (gene) Nannochloropsis oceanica

Overview
NameNO03G04540
Unique NameNO03G04540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr3:1305559..1307133 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA primase large subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1305559..1307133 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003896DNA primase activity
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006269DNA replication, synthesis of RNA primer
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR007238DNA_primase_lsu_euk/arc
Homology
BLAST of NO03G04540 vs. NCBI_GenBank
Match: EWM29885.1 (dna primase large subunit [Nannochloropsis gaditana])

HSP 1 Score: 865.9 bits (2236), Expect = 6.300e-248
Identity = 423/523 (80.88%), Postives = 463/523 (88.53%), Query Frame = 0
Query:    1 MQTTTRAIHGEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIAPLVNNMAKQYTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDRGTPTSPMAAAMEVEAGSGHPP 524
            MQTTTRAIHGEP+YTRVKREPT+LLSLYNTAP+AEITLEEFELYALDRLQ+LR+IESLRLRG+KGDEF+MKLEE+++ C+PM+ GT EEV KDQ+SHFILRIA+CKTEDLRRWFLKHESELFRFRLERLDS ERAKFMEQSGLAYD+VSKEDVLRLKAQLQAVPIFSQQPGYGQG HTVEVTRTQFFRIPFTQALDLVAHRQVFLE GFAYVPVERLVSIIVARFRSSLSRGLL+AFG+MPYVL DGRIAPLV+NMAKQYTGKDFS TK+GD++++NDLDMLADRSMP+CMRVLHKNLR EHKLKHWGRLQYGLFLKG GIGMEDAIQFWE+EFTKIMTTDVFNKQYAYSIRHYFGKEG+RKDYTPFNCSKIILG GPG GE+HGCP+RHYDEANLN+LLER+GVG  +R+EM+KLSKGQHYQLAC KHFE +HKGAES+IS+DGVGNHPNAFFAASMA+YKEKNG                                 +D G P SP   +ME+  G G PP
Sbjct:    1 MQTTTRAIHGEPTYTRVKREPTRLLSLYNTAPQAEITLEEFELYALDRLQILRSIESLRLRGMKGDEFRMKLEEIISACMPMTLGTAEEVRKDQISHFILRIAYCKTEDLRRWFLKHESELFRFRLERLDSNERAKFMEQSGLAYDVVSKEDVLRLKAQLQAVPIFSQQPGYGQGIHTVEVTRTQFFRIPFTQALDLVAHRQVFLEGGFAYVPVERLVSIIVARFRSSLSRGLLEAFGAMPYVLTDGRIAPLVSNMAKQYTGKDFSGTKTGDSLDLNDLDMLADRSMPMCMRVLHKNLRLEHKLKHWGRLQYGLFLKGAGIGMEDAIQFWEKEFTKIMTTDVFNKQYAYSIRHYFGKEGKRKDYTPFNCSKIILGPGPGHGEFHGCPFRHYDEANLNKLLERAGVGAMDRDEMIKLSKGQHYQLACMKHFETTHKGAESLISMDGVGNHPNAFFAASMAFYKEKNG----------EGGRRGGSPNPSSQTSASSAGPGEDAGDPASPHGESMEIGTGEGSPP 513          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: CBN79116.1 (DNA primase [Ectocarpus siliculosus])

HSP 1 Score: 473.8 bits (1218), Expect = 7.000e-130
Identity = 231/455 (50.77%), Postives = 316/455 (69.45%), Query Frame = 0
Query:   20 EPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMS----QGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIAPLVNNMAKQYTGKDFSETKSGDTVNVND--LDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAE-SVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            E  K +S+YN AP  EITL+EFEL ALDRLQVLR IE L+ R ++GD+F+  L E +   + +S    +    +  KD +SHFILR+A+C++EDLRRWFL  E+ LFR RLE L   E +KF+ + GL +++V+ E    L+++L ++P              +E  RT ++RIPF QA DL+  RQV+LE GFAYVPV+R+V+I+VAR+R  +S+ L++A     YV +D R  PL+ NM+KQY G+DF      D  N+    L+ LA+RSMPLCM+ LH  L  EHKLKHWGRLQYGLFLKG G+ ++DA+ FW+  FTKIM  D F KQYAY++RH +GKEG+R +YTP++C KII+G  P  G++HGCPYRHYDE +L+ LL +  +G T+++ +L+  K ++YQLAC +HFE +HKG E S +S DGVGNHPNA+  ASM ++KEK  G
Sbjct:   22 ERHKAISMYNEAPFEEITLDEFELVALDRLQVLRKIEDLKARNVRGDDFRRALRESLHKYMKLSTLNEESASADKRKDTISHFILRLAYCRSEDLRRWFLTQETALFRHRLEELSPAEMSKFIPEHGLFFEVVTPERKAALRSKLLSIP----------AAPVMEFDRTTYYRIPFWQASDLIGKRQVYLEGGFAYVPVQRVVTIVVARYRMGISKSLMEASNHFAYVTSDSRFGPLLQNMSKQYLGRDFGNGDGTDPDNIKPGMLNSLAERSMPLCMKQLHSALNREHKLKHWGRLQYGLFLKGAGLSVDDAMAFWQAMFTKIMGLDQFQKQYAYNVRHMYGKEGKRTNYTPYSCLKIIMGNPPAAGDHHGCPYRHYDEDHLSSLLSQVRIGATDKDAILRQVKSKNYQLACQRHFEATHKGYEASGVSTDGVGNHPNAWMHASMEFHKEKAAG 466          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_009038880.1 (hypothetical protein AURANDRAFT_29345 [Aureococcus anophagefferens] >EGB06300.1 hypothetical protein AURANDRAFT_29345 [Aureococcus anophagefferens])

HSP 1 Score: 410.2 bits (1053), Expect = 9.500e-111
Identity = 210/447 (46.98%), Postives = 297/447 (66.44%), Query Frame = 0
Query:   24 LLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEV----LKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIAPLVNNMAKQ--YTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISL-DGVGNHPNAFFAASMAYYKE 464
            L+SLY   P+ E+TL+EFE+YA+DRL++LRTI++L+ +G K  E + +L  V+A  LP+ +G+ E V     KDQVSHFILR+ + +TE++RRWFL  E  LF+ RL  L   +   F+  +GL ++ VS  DV    A+  A+   S+    G  G         ++R+PF +A+DL+  R+V+LE G+AYVP  +L +I+VARFRS+LSR L  A  S+     D R++PL+NN+ K     GKD  E    + ++   +D LA +SMPLCM+ LH  L+ +HKLKHWGR QYGLFLK  G+ MED ++F++ EFTKIMT D F+K+YAY+IRH +GKEG+R +Y+P+ C K+I+   PG GEYHGCPY+HYD+ +L  +L    +     + +L  +K ++YQLAC KHFEV+H  A  V +  DGVGNHPNA+F AS  Y+KE
Sbjct:   23 LVSLYERPPQTELTLDEFEIYAVDRLKILRTIDALKQKGFKPRELEAELAPVLAQALPL-RGSAEHVKADERKDQVSHFILRLGYSRTEEMRRWFLTQECALFKHRLGTLSGPQLGLFLAANGLKFEEVSDADV---DARSVALSKISKTGDGGAAG---------YYRVPFVEAIDLIGRREVYLEKGYAYVPAAKLHAIVVARFRSALSRSLAKASSSLAAAAGDPRLSPLLNNIEKHDLSNGKDL-EDDDVEGIHPEQIDALAKQSMPLCMQQLHGALKRDHKLKHWGRQQYGLFLKAAGLSMEDQLRFFQAEFTKIMTVDAFSKEYAYNIRHRYGKEGKRTEYSPYGCYKLIMDMAPGPGEYHGCPYKHYDDDHLASILGAMDISRESSQAILGQAKSKNYQLACQKHFEVTHPKAAGVAARPDGVGNHPNAWFKASRIYHKE 455          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: OQR87344.1 (DNA primase [Achlya hypogyna])

HSP 1 Score: 404.4 bits (1038), Expect = 5.200e-109
Identity = 217/452 (48.01%), Postives = 294/452 (65.04%), Query Frame = 0
Query:   10 GEPSYTRV---KREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLA--DGRIAPLVNNMAKQYTGKDF--SETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFF 455
            G  S  RV   K+     LS+Y   P+ E+TLE+FE Y++DRLQ+L+T E  RLRG   D+   KLE+ M   LPM   T E+  KD++SHFILR+A C TE+LRRWFL  ES LFRFRL+     E+ +FM++ GL YD V   ++  L+ QLQAV I S           + +    + ++PFT+A+DL+  R+VFL+AG AYVP + LV+I+ ARFRS+LS+ L  AF       A  D R+ P++ N+AK + G DF  +   SG+ V  + ++ LA  +MPLCM+ LH  L+++  LKH GR+QYGLFLKG+G+ MEDA+ FW   F K M  D FNK+YAY+IRH +GKEG+RKDYTPFNC KII    P  G+YHGCP+RH+DE +L   L   G+   E+E +++L+K ++YQ+AC +HFEV   G  +    D VGNHPNAFF
Sbjct:    5 GNTSGARVLQRKQAARVTLSMYQEPPQVEVTLEQFEAYSIDRLQLLKTFELQRLRGAARDD--SKLEKAMNRFLPMR--TAEDREKDELSHFILRMAFCHTEELRRWFLSQESSLFRFRLDMASRDEKMQFMKRHGLVYDQVDSNEINSLRPQLQAVHIAS----VANMKDAINLPDV-YVKVPFTEAIDLIGQRKVFLKAGVAYVPFDHLVTILHARFRSTLSKQLAIAFRKFNGSAAARDDRLMPVLKNLAKHHIGPDFGAAPVSSGNAVTPDMIEGLAATAMPLCMKSLHHALKTQSHLKHGGRMQYGLFLKGIGLEMEDALTFWRNVFCKKMNVDDFNKKYAYNIRHNYGKEGKRKDYTPFNCMKIITADPPKAGDYHGCPFRHFDEHHLRASLR--GINEVEKESIVQLAKSKNYQVACRRHFEVLFPGGNA----DAVGNHPNAFF 441          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: POM62975.1 (DNA primase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 399.4 bits (1025), Expect = 1.700e-107
Identity = 208/463 (44.92%), Postives = 305/463 (65.87%), Query Frame = 0
Query:   17 VKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEV------MATCLPMSQGTVE-EVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            V R    +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+       + +  PM  G  E +  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+ +FM+Q+GL+Y+  + ++V   +++L+AV   +     G       +    +F++PFT+ALDLVA R+V++EAG AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP++ N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RHY++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:   13 VSRHGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRSAAPMRTGQAEDDTAKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTRDEKIQFMKQNGLSYEEATMKEVEARQSKLKAVRDANDPKVRG-------LPLPAYFKVPFTEALDLVATRRVYIEAGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDDRLAPVLTNLAKHHIDADYSSTPVPGSENAIRPDMIDGLAATSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHYEQEHLRKALQ--GVSEGDKQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 462          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_008872686.1 (hypothetical protein H310_08627 [Aphanomyces invadans] >ETV98489.1 hypothetical protein H310_08627 [Aphanomyces invadans])

HSP 1 Score: 398.3 bits (1022), Expect = 3.700e-107
Identity = 209/442 (47.29%), Postives = 288/442 (65.16%), Query Frame = 0
Query:   25 LSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQ-----FFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLA--DGRIAPLVNNMAKQYTGKDFSE--TKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAAS 458
            LS+Y   P  E+TLEEFE Y++DRLQVL+T+E  R+RG    E + K+E+ +   LPM   T E+  KDQ+SHFILR+A C TE+LRRWFL HES LF+ RL+R    ++  FM  +GL Y+ V ++++  L  +L+ V          +  +T ++           ++PFT+A+DL+  R+V+L+ G AYVP E LVSI+ ARFRSSLS+ L  AF       A  D R+ P++ N+AK + G D+S     SG+T+    +D L+  SMPLCM+ LH+ L ++  LKH GR+QYGLFLKGVG+ ++DA++FW +EF K M  D FNK+YAY+IRH +GKEG+RKDYTP NC KII    P  GEYHGCP+RH+DE +L   L   G+   ++E +++L+K + YQ+AC +HFE  H  A S    D VGNHPNAFF  S
Sbjct:   26 LSMYQEPPVVEVTLEEFESYSIDRLQVLKTVEMHRVRGGNPRETETKVEKALNMYLPMR--TTEDREKDQLSHFILRMAFCHTEELRRWFLTHESYLFKHRLDRATREDKMHFMRTNGLIYEQVDEDELNILAPKLRTV----------RAANTTDMKEAYKDLDVHVKVPFTEAIDLIGSRKVYLQGGVAYVPFEHLVSILYARFRSSLSKQLAVAFRKFGGSAAARDDRLMPVLKNLAKHHIGPDYSSAPVASGNTITAAMVDGLSKTSMPLCMKSLHQALTTQSHLKHGGRMQYGLFLKGVGLQLDDALEFWRKEFCKKMNVDDFNKKYAYNIRHNYGKEGKRKDYTPSNCMKIITADPPKQGEYHGCPFRHFDEHHLRASLR--GISEIDKEAIVQLAKAKQYQVACKRHFEAMHPNANS----DAVGNHPNAFFEES 449          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_009832544.1 (hypothetical protein H257_08389 [Aphanomyces astaci] >ETV78207.1 hypothetical protein H257_08389 [Aphanomyces astaci])

HSP 1 Score: 397.9 bits (1021), Expect = 4.900e-107
Identity = 207/441 (46.94%), Postives = 292/441 (66.21%), Query Frame = 0
Query:   25 LSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLA--DGRIAPLVNNMAKQYTGKDFS--ETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYY 462
            LS+Y  AP  E+TLEEFE Y++DRL VL+T+E  R+RG    E ++K+++ +   LPM   T E+  KDQ+SHFILR+A C TE+LRRWFL HES LF+ RL+R    ++  FM  +GL Y+ V ++++  L  +L+ V   +      +    ++V      ++PFT+A+DL+  R+V+L+ G AYVP + LVSI+ ARFRSSLS+ L  AF       A  D R+ P++ N+AK + G D+S     SG+++    +D L+  SMPLCM+ LH  L ++  LKH GR+QYGLFLKG+G+ ++DAI+FW +EF K +  D FNK+YAY+IRH +GKEG+RKDYTP NC KII    P  GEYHGCP+RH+DE +L   L   G+G  ++E +++L+K + +Q+AC +HFE  H  A S    DGVGNHPNAFF  S  Y+
Sbjct:   26 LSMYQDAPVVEVTLEEFESYSIDRLHVLKTVEMHRVRGGNPRETEVKVDKALNMYLPMR--TSEDREKDQLSHFILRMAFCHTEELRRWFLAHESYLFKHRLDRATREDKMHFMRTNGLIYEQVDEDEMKALAPKLKTVRA-TTMTDMKEAYKDLDV----HVKVPFTEAIDLIGSRKVYLQGGIAYVPFDHLVSILYARFRSSLSKQLAVAFRKFGGSAASRDDRLMPVLKNLAKHHIGPDYSTAPVASGNSITAAMVDGLSKTSMPLCMKSLHLALTTQSHLKHGGRMQYGLFLKGMGLQLDDAIEFWRKEFCKKINVDDFNKKYAYNIRHNYGKEGKRKDYTPLNCMKIITSDPPKQGEYHGCPFRHFDEHHLRASLR--GIGEIDKEAIVQLAKAKQFQVACKRHFEAMHPKANS----DGVGNHPNAFFEESRKYF 453          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_009525407.1 (hypothetical protein PHYSODRAFT_330433 [Phytophthora sojae] >EGZ22690.1 hypothetical protein PHYSODRAFT_330433 [Phytophthora sojae])

HSP 1 Score: 397.5 bits (1020), Expect = 6.400e-107
Identity = 209/470 (44.47%), Postives = 307/470 (65.32%), Query Frame = 0
Query:   10 GEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEV------MATCLPMSQGTVE-EVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFG--SMPYVLADGRIAPLVNNMAKQYTGKDFSETK---SGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGG 468
            G     +  R+   +LSLYN AP  E++LE+FE +A+DRL VL+ +E+ RLR ++  + + +LE+       +    PM  G  E +  KD +SHF LR+A C+TE+LRRWFL  ES LFR+RL++L   E+  FM+Q+GL+YD  + +++   +++L+AV   +        GH +      +F++PFT+ALDLVA R+V++EAG AYVP E +VSI+ A FR++LS+ L  AF   +   +  D R+AP+++N+AK +   D+S T    S + +  + +D LA  SMPLCMR LHK L+  H LK  GR QYGLFLKG+G+ ++DAI +W++EF K M+ D FNK+YAY+IRH +GKEG+RKDY P NC +II G  P  GEYHGCP+RHY++ +L + L+  GV   +++E+L L++  HYQ+AC K+FE +H G++     D + NHPN +F  S  YY  K  G
Sbjct:    5 GNSRRQQAPRQGLSMLSLYNEAPLVEVSLEQFEEFAIDRLHVLKAVENYRLRSVQMKDREGRLEKTLNKHMPLRAAAPMRAGQAENDATKDVLSHFFLRMAFCQTEELRRWFLTQESTLFRYRLDKLTREEKILFMKQNGLSYDEATLKEIEARQSKLKAVRDANDPK---VRGHPLPA----YFKVPFTEALDLVATRRVYIEAGTAYVPFEHVVSILFAAFRANLSKELSGAFRKYNRSLISKDDRLAPVLSNLAKHHIDADYSATPVPGSENAIRPDMIDGLAGTSMPLCMRSLHKGLKLNHHLKFAGRQQYGLFLKGIGLQLDDAIAYWKQEFCKKMSVDDFNKKYAYNIRHNYGKEGKRKDYAPSNCMRIITGDPPKNGEYHGCPFRHYEQEHLRKALQ--GVPEGDQQEILSLAENHHYQIACKKYFEATHPGSDP----DVLINHPNGYFEESRKYYAAKEKG 461          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_008606344.1 (hypothetical protein SDRG_02528 [Saprolegnia diclina VS20] >EQC39870.1 hypothetical protein SDRG_02528 [Saprolegnia diclina VS20])

HSP 1 Score: 394.8 bits (1013), Expect = 4.100e-106
Identity = 211/437 (48.28%), Postives = 288/437 (65.90%), Query Frame = 0
Query:   25 LSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLA--DGRIAPLVNNMAKQYTGKDF--SETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAAS 458
            LS+Y   P++ +TLE+FE Y++DRLQ+L+TIE  RLRG        KLE+ M   LP+   T E+ +KD++SHFILR+A C TE+LRRWFL  ES LF+ RL+     E+  FM+  GL YD V   ++  LK QL AV   S      +G +  EV    + ++PFT+A+DL+  R+VFL+AG AYVP E LV+I+ ARFRS+LS+ L  AF       A  D R+ P++ N+AK + G D+  +   SG+ +  + +D LA  SMPLCM+ LH+ L+++H LKH GR+QYGLFLKG+G+ M+DAI FW   F K M  D FNK+YAY+IRH +GKEG+RKDYTP+NC KII    P  G+YHGCP+RH+DE +L   L   G+   E+E +++L+K ++YQ+AC +HFEV      +    D VGNHPNAFF  S
Sbjct:   23 LSMYTEPPQSGVTLEQFEAYSIDRLQMLKTIEMQRLRG----RDDAKLEKAMHRYLPIR--TDEDRVKDELSHFILRMAFCHTEELRRWFLAQESMLFKLRLDMASRDEKMHFMKSHGLLYDQVEAVEMAALKPQLTAVHRAS-AASIKEGYNVPEV----YVKVPFTEAIDLIGQRKVFLKAGTAYVPFEHLVTILFARFRSTLSKHLAVAFRKFNGSAAARDDRLMPVLKNLAKHHIGPDYGSAPVASGNAITPDMIDGLAATSMPLCMKSLHQALKTQHHLKHGGRMQYGLFLKGIGLQMDDAITFWRTIFCKKMNVDDFNKKYAYNIRHNYGKEGKRKDYTPYNCMKIITSDPPKAGDYHGCPFRHFDEYHLRASLR--GINEVEKEAIVQLAKNKNYQVACRRHFEVLFPHGNA----DAVGNHPNAFFEES 442          
BLAST of NO03G04540 vs. NCBI_GenBank
Match: XP_008606345.1 (hypothetical protein, variant [Saprolegnia diclina VS20] >EQC39871.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 394.8 bits (1013), Expect = 4.100e-106
Identity = 211/437 (48.28%), Postives = 288/437 (65.90%), Query Frame = 0
Query:   25 LSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLA--DGRIAPLVNNMAKQYTGKDF--SETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAAS 458
            LS+Y   P++ +TLE+FE Y++DRLQ+L+TIE  RLRG        KLE+ M   LP+   T E+ +KD++SHFILR+A C TE+LRRWFL  ES LF+ RL+     E+  FM+  GL YD V   ++  LK QL AV   S      +G +  EV    + ++PFT+A+DL+  R+VFL+AG AYVP E LV+I+ ARFRS+LS+ L  AF       A  D R+ P++ N+AK + G D+  +   SG+ +  + +D LA  SMPLCM+ LH+ L+++H LKH GR+QYGLFLKG+G+ M+DAI FW   F K M  D FNK+YAY+IRH +GKEG+RKDYTP+NC KII    P  G+YHGCP+RH+DE +L   L   G+   E+E +++L+K ++YQ+AC +HFEV      +    D VGNHPNAFF  S
Sbjct:   23 LSMYTEPPQSGVTLEQFEAYSIDRLQMLKTIEMQRLRG----RDDAKLEKAMHRYLPIR--TDEDRVKDELSHFILRMAFCHTEELRRWFLAQESMLFKLRLDMASRDEKMHFMKSHGLLYDQVEAVEMAALKPQLTAVHRAS-AASIKEGYNVPEV----YVKVPFTEAIDLIGQRKVFLKAGTAYVPFEHLVTILFARFRSTLSKHLAVAFRKFNGSAAARDDRLMPVLKNLAKHHIGPDYGSAPVASGNAITPDMIDGLAATSMPLCMKSLHQALKTQHHLKHGGRMQYGLFLKGIGLQMDDAITFWRTIFCKKMNVDDFNKKYAYNIRHNYGKEGKRKDYTPYNCMKIITSDPPKAGDYHGCPFRHFDEYHLRASLR--GINEVEKEAIVQLAKNKNYQVACRRHFEVLFPHGNA----DAVGNHPNAFFEES 442          
The following BLAST results are available for this feature:
BLAST of NO03G04540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29885.16.300e-24880.88dna primase large subunit [Nannochloropsis gaditan... [more]
CBN79116.17.000e-13050.77DNA primase [Ectocarpus siliculosus][more]
XP_009038880.19.500e-11146.98hypothetical protein AURANDRAFT_29345 [Aureococcus... [more]
OQR87344.15.200e-10948.01DNA primase [Achlya hypogyna][more]
POM62975.11.700e-10744.92DNA primase [Phytophthora palmivora var. palmivora... [more]
XP_008872686.13.700e-10747.29hypothetical protein H310_08627 [Aphanomyces invad... [more]
XP_009832544.14.900e-10746.94hypothetical protein H257_08389 [Aphanomyces astac... [more]
XP_009525407.16.400e-10744.47hypothetical protein PHYSODRAFT_330433 [Phytophtho... [more]
XP_008606344.14.100e-10648.28hypothetical protein SDRG_02528 [Saprolegnia dicli... [more]
XP_008606345.14.100e-10648.28hypothetical protein, variant [Saprolegnia diclina... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005433NSK005433Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04540.1NO03G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13482gene_1658Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g42gene746Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04540.1NO03G04540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04540 ID=NO03G04540|Name=NO03G04540|organism=Nannochloropsis oceanica|type=gene|length=1575bp
ATGCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGT
CAAGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGG
CTGAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAA
GTGCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGA
GTTTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTC
AGGGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTG
CGCATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCA
CGAGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAAC
GGGCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAG
GAGGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAG
CCAGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGA
CGCAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCAC
CGACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTT
GGTCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCT
TGGATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCG
CCGTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGA
GACCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCG
ACAGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCG
GAGCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAA
GGGGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGT
TCACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCG
ATTAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTT
CAATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATC
ATGGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTG
GAGAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTC
CAAGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTC
ATAAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCA
AATGCATTTTTTGCGGCCAGCATGGCTTACTATAAGGAGAAAAATGGGGG
GGAAACGGGAGGGAAAAGGGGAGGGAAAGAGTCGTCGCAGTCACCGGCGG
GGTCGCAAGCATCGGGATTCACGGCGGGAGGGGAGGGAGGGGAAGGGGAC
GATAGAGGGACGCCGACGTCGCCAATGGCGGCGGCGATGGAGGTGGAGGC
GGGGAGTGGGCACCCGCCGGAGTGA
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protein sequence of NO03G04540.1

>NO03G04540.1-protein ID=NO03G04540.1-protein|Name=NO03G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MQTTTRAIHGEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQ
VLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFIL
RIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSK
EDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAH
RQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIA
PLVNNMAKQYTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRS
EHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYS
IRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLL
ERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHP
NAFFAASMAYYKEKNGGETGGKRGGKESSQSPAGSQASGFTAGGEGGEGD
DRGTPTSPMAAAMEVEAGSGHPPE*
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Synonyms
Publications