NO03G04540.1, NO03G04540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04540.1
Unique NameNO03G04540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr3:1305559..1307133 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1305559..1307133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04540.1 vs.
Match: EWM29885.1 (dna primase large subunit [Nannochloropsis gaditana])

HSP 1 Score: 880.9 bits (2275), Expect = 1.900e-252
Identity = 432/523 (82.60%), Postives = 475/523 (90.82%), Query Frame = 0 
Query:    1 MQTTTRAIHGEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIAPLVNNMAKQYTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHPNAFFAASMAYYKEKNGGETGGKRGGKESSQSPAGSQASGFTAGGEGGEGDDRGTPTSPMAAAMEVEAGSGHPP 524
            MQTTTRAIHGEP+YTRVKREPT+LLSLYNTAP+AEITLEEFELYALDRLQ+LR+IESLRLRG+KGDEF+MKLEE+++ C+PM+ GT EEV KDQ+SHFILRIA+CKTEDLRRWFLKHESELFRFRLERLDS ERAKFMEQSGLAYD+VSKEDVLRLKAQLQAVPIFSQQPGYGQG HTVEVTRTQFFRIPFTQALDLVAHRQVFLE GFAYVPVERLVSIIVARFRSSLSRGLL+AFG+MPYVL DGRIAPLV+NMAKQYTGKDFS TK+GD++++NDLDMLADRSMP+CMRVLHKNLR EHKLKHWGRLQYGLFLKG GIGMEDAIQFWE+EFTKIMTTDVFNKQYAYSIRHYFGKEG+RKDYTPFNCSKIILG GPG GE+HGCP+RHYDEANLN+LLER+GVG  +R+EM+KLSKGQHYQLAC KHFE +HKGAES+IS+DGVGNHPNAFFAASMA+YKEKNG   GG+RGG  +  S         T+    G G+D G P SP   +ME+  G G PP
Sbjct:    1 MQTTTRAIHGEPTYTRVKREPTRLLSLYNTAPQAEITLEEFELYALDRLQILRSIESLRLRGMKGDEFRMKLEEIISACMPMTLGTAEEVRKDQISHFILRIAYCKTEDLRRWFLKHESELFRFRLERLDSNERAKFMEQSGLAYDVVSKEDVLRLKAQLQAVPIFSQQPGYGQGIHTVEVTRTQFFRIPFTQALDLVAHRQVFLEGGFAYVPVERLVSIIVARFRSSLSRGLLEAFGAMPYVLTDGRIAPLVSNMAKQYTGKDFSGTKTGDSLDLNDLDMLADRSMPMCMRVLHKNLRLEHKLKHWGRLQYGLFLKGAGIGMEDAIQFWEKEFTKIMTTDVFNKQYAYSIRHYFGKEGKRKDYTPFNCSKIILGPGPGHGEFHGCPFRHYDEANLNKLLERAGVGAMDRDEMIKLSKGQHYQLACMKHFETTHKGAESLISMDGVGNHPNAFFAASMAFYKEKNG--EGGRRGGSPNPSSQ--------TSASSAGPGEDAGDPASPHGESMEIGTGEGSPP 513
The following BLAST results are available for this feature:
BLAST of NO03G04540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29885.11.900e-25282.60dna primase large subunit [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04540NO03G04540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04540.1NO03G04540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04540.1.cds1NO03G04540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04540.1 ID=NO03G04540.1|Name=NO03G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ATGCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGT
CAAGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGG
CTGAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAA
GTGCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGA
GTTTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTC
AGGGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTG
CGCATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCA
CGAGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAAC
GGGCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAG
GAGGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAG
CCAGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGA
CGCAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCAC
CGACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTT
GGTCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCT
TGGATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCG
CCGTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGA
GACCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCG
ACAGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCG
GAGCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAA
GGGGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGT
TCACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCG
ATTAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTT
CAATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATC
ATGGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTG
GAGAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTC
CAAGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTC
ATAAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCA
AATGCATTTTTTGCGGCCAGCATGGCTTACTATAAGGAGAAAAATGGGGG
GGAAACGGGAGGGAAAAGGGGAGGGAAAGAGTCGTCGCAGTCACCGGCGG
GGTCGCAAGCATCGGGATTCACGGCGGGAGGGGAGGGAGGGGAAGGGGAC
GATAGAGGGACGCCGACGTCGCCAATGGCGGCGGCGATGGAGGTGGAGGC
GGGGAGTGGGCACCCGCCGGAGTGA
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protein sequence of NO03G04540.1

>NO03G04540.1-protein ID=NO03G04540.1-protein|Name=NO03G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MQTTTRAIHGEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYALDRLQ
VLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVSHFIL
RIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYDMVSK
EDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALDLVAH
RQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLADGRIA
PLVNNMAKQYTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHKNLRS
EHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQYAYS
IRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANLNRLL
ERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGVGNHP
NAFFAASMAYYKEKNGGETGGKRGGKESSQSPAGSQASGFTAGGEGGEGD
DRGTPTSPMAAAMEVEAGSGHPPE*
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mRNA from alignment at chr3:1305559..1307133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04540.1 ID=NO03G04540.1|Name=NO03G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at chr3:1305559..1307133+ (Nannochloropsis oceanica)
ATGCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGT
CAAGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGG
CTGAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAA
GTGCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGA
GTTTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTC
AGGGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTG
CGCATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCA
CGAGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAAC
GGGCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAG
GAGGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAG
CCAGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGA
CGCAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCAC
CGACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTT
GGTCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCT
TGGATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCG
CCGTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGA
GACCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCG
ACAGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCG
GAGCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAA
GGGGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGT
TCACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCG
ATTAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTT
CAATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATC
ATGGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTG
GAGAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTC
CAAGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTC
ATAAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCA
AATGCATTTTTTGCGGCCAGCATGGCTTACTATAAGGAGAAAAATGGGGG
GGAAACGGGAGGGAAAAGGGGAGGGAAAGAGTCGTCGCAGTCACCGGCGG
GGTCGCAAGCATCGGGATTCACGGCGGGAGGGGAGGGAGGGGAAGGGGAC
GATAGAGGGACGCCGACGTCGCCAATGGCGGCGGCGATGGAGGTGGAGGC
GGGGAGTGGGCACCCGCCGGAGTGA
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Coding sequence (CDS) from alignment at chr3:1305559..1307133+

>NO03G04540.1 ID=NO03G04540.1|Name=NO03G04540.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr3:1305559..1307133+ (Nannochloropsis oceanica)
ATGCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGT
CAAGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGG
CTGAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAA
GTGCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGA
GTTTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTC
AGGGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTG
CGCATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCA
CGAGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAAC
GGGCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAG
GAGGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAG
CCAGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGA
CGCAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCAC
CGACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTT
GGTCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCT
TGGATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCG
CCGTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGA
GACCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCG
ACAGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCG
GAGCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAA
GGGGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGT
TCACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCG
ATTAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTT
CAATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATC
ATGGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTG
GAGAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTC
CAAGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTC
ATAAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCA
AATGCATTTTTTGCGGCCAGCATGGCTTACTATAAGGAGAAAAATGGGGG
GGAAACGGGAGGGAAAAGGGGAGGGAAAGAGTCGTCGCAGTCACCGGCGG
GGTCGCAAGCATCGGGATTCACGGCGGGAGGGGAGGGAGGGGAAGGGGAC
GATAGAGGGACGCCGACGTCGCCAATGGCGGCGGCGATGGAGGTGGAGGC
GGGGAGTGGGCACCCGCCGGAGTGA
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Synonyms
Publications