NO03G04470, NO03G04470 (gene) Nannochloropsis oceanica

Overview
NameNO03G04470
Unique NameNO03G04470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1954
Alignment locationchr3:1285582..1287535 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome b5
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1285582..1287535 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036400Cyt_B5-like_heme/steroid_sf
IPR001199Cyt_B5-like_heme/steroid-bd
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0020037heme binding
GO:0016491oxidoreductase activity
Homology
BLAST of NO03G04470 vs. NCBI_GenBank
Match: EWM29879.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 2.500e-51
Identity = 142/349 (40.69%), Postives = 187/349 (53.58%), Query Frame = 0
Query:    7 DFVGVLVALMVLAGWAALSNIFFGHQTFFRRSSEGGQEDEEASFNAHNCLPTLPGPDIVPQAPAPTYTEPPSTPDRLQALLPQDLVSTEVLTFLSPYDVTLVLPVCQFLNTTGEQPACWNEASRRSTAAWIRRLDMPSTVEEGGKEIKRGWELGERESPKLEFFRRMFLFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMR-EYLLWDPSRALGRAGTIRGLF--------YADPSPVSSEHSSWKASFVHMPMIQSAIAFMGRQQRGPSQSLQTVTTGEDSRPKRRWLVDDRRVLYIRNFAGDKQPPNIVKIL 347
            + +G++VAL+ L G +AL N+ FGH TFFR   E      +AS         +P P   P  P P ++ PPS PDRL   +P++L  +EVL FLSPY+VT +LP  ++ +  GE    W  A  R  A   + L        G +E+       E  +PKLEFFRRMF++PY+    H    +C +IV GKVYDVT FL +HPGG   LLE+ G VDATA FE+S HS VA+  M  +YL+WDP+  LGR GTI GL          A P+P  S+ +        +P +   +  + R  RG         T     P+   LVDDRR L   N  GD+ PPNIVKIL
Sbjct:    5 ELLGLVVALLALLGASALINVLFGHPTFFR---EADHLPSKAS---------VPFPP--PTFPTPVHSPPPSVPDRLPVHIPKELFVSEVLLFLSPYEVTRLLPTSRYFHLAGEHVTYWQHAWTRRLAGMRQPLKRRCEATRGPEELL----THECHNPKLEFFRRMFVYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPTPCLGRGGTIAGLLNPSMWRSAAACPAPSPSQVAQGGRFEGLLPSLLVLLTDLQRFCRGHITRRPVGAT----LPR---LVDDRRHL---NGGGDRSPPNIVKIL 325          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: BAJ93859.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 78.6 bits (192), Expect = 4.400e-11
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 0
Query:  175 LFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWDPSRALGRA----GTIRGLFYADPSPVSSEHSSWKASFVHMPMIQSAIAF 294
            ++ +     H  R  CW+I+ GKVYDVTP++  HPGG   LL   G  DATA F+   HSD AK +MR+Y + +   A   A      +     ADP+P +S     + +   +P++  A+AF
Sbjct:    7 VYSFPEVRKHSERQDCWLIISGKVYDVTPYMEEHPGGDEVLLACTGK-DATADFDDIGHSDAAKELMRQYCVGEVDAATVPAKLGCAVLPAKGAADPAPRASTGQLLQLA---LPLLLVAMAF 125          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: XP_021974204.1 (cytochrome b5-like [Helianthus annuus] >OTG21645.1 putative cytochrome b5-like heme/steroid binding domain-containing protein [Helianthus annuus])

HSP 1 Score: 78.6 bits (192), Expect = 4.400e-11
Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 0
Query:  184 HDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWDPSRALGRAGTIRGLFYADP-SPVSSEHSSWKASFVHM-----PMIQSAIAF 294
            H+    CW+I++GKVYDVTPF+  HPGG+  LL   G  DAT  FE   HSD AK MM +Y + D    L ++  I  + YA P +P +S       S + +     P+   A+AF
Sbjct:   14 HNQTQDCWLIIQGKVYDVTPFMEDHPGGSEVLLASTGK-DATDDFEDIGHSDDAKAMMDKYYIGD----LEKSYKIAPIHYAPPAAPTASADDKTSESIIKILQFLAPLFIFALAF 124          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: XP_020166229.1 (cytochrome b5-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 78.2 bits (191), Expect = 5.700e-11
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0
Query:  175 LFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWDPSRA 253
            ++ +Q    H  R  CW+I+ GKVYDVTPF+  HPGG   LL   G  DATA FE   HSD AK +M +Y + +   A
Sbjct:    7 VYSFQEVRKHSQRKDCWLIISGKVYDVTPFMEEHPGGDEVLLACTGK-DATADFEDIGHSDAAKELMPQYCIGEVDAA 83          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: EJU06455.1 (hypothetical protein DACRYDRAFT_19605 [Dacryopinax primogenitus])

HSP 1 Score: 77.8 bits (190), Expect = 7.500e-11
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 0
Query:  175 LFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWDPSRALGRA--GTIRGLFYADPSPVSSEHSSWKASFVHMPMIQSAIA 293
            L  YQ  + HDTR SCW++V+G++YDVT FL+ HPGGA  +L HAG  DATA +  S+H   A L      +  PS+ LG     T+    +A  + ++ +    K +   +P +   I+
Sbjct:   71 LIAYQELQQHDTRESCWILVRGQIYDVTDFLAQHPGGALIILSHAGR-DATAAY--SSHHPPALLDN----ILSPSQHLGAVDPATLPPGHHASSAELTEDEQRVKQARAEIPPLNMCIS 183          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: XP_003626585.1 (cytochrome b5 [Medicago truncatula] >AES82803.1 cytochrome b5-like heme/steroid-binding domain protein [Medicago truncatula])

HSP 1 Score: 77.8 bits (190), Expect = 7.500e-11
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0
Query:  176 FPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLL 247
            F +     H+ +T CW+I+ GKVYDVTPFL  HPGG  +L+   G  DAT  FE   HSD A  MM EY +
Sbjct:    9 FRFDEIAKHNNKTDCWIIINGKVYDVTPFLDDHPGGEESLISSTGK-DATVDFEDVGHSDSAIEMMHEYFV 78          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: EOX95625.1 (Cytochrome B5, n2,ATCB5-E,CB5-E, putative [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 9.700e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0
Query:  175 LFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLL 247
            +F Y+    +  RT CW+++ GKVYDVTPFL  HPGG   LL  +G  DAT  FE   HSD AK MM +Y +
Sbjct:    7 VFAYEEVAKNKERTGCWLLISGKVYDVTPFLEEHPGGDEVLLAASGK-DATEDFEDVGHSDDAKQMMEKYYI 77          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: XP_007051468.2 (PREDICTED: cytochrome b5 [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 9.700e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0
Query:  175 LFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLL 247
            +F Y+    +  RT CW+++ GKVYDVTPFL  HPGG   LL  +G  DAT  FE   HSD AK MM +Y +
Sbjct:    7 VFAYEEVAKNKERTGCWLLISGKVYDVTPFLEEHPGGDEVLLAASGK-DATEDFEDVGHSDDAKQMMEKYYI 77          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: XP_024508038.1 (Cytochrome b5 [Strongyloides ratti] >CEF68838.1 Cytochrome b5 [Strongyloides ratti])

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-10
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  175 LFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWD 249
            ++  +  + H T +SCW+I+  +V DVT FL  HPGG   LLEHAG+ DAT  FE   HS  A+ M+ EY+L D
Sbjct:    6 IYKREEVKEHTTASSCWIIINNQVLDVTKFLDEHPGGCEVLLEHAGN-DATEAFEDVGHSTDARQMLPEYILGD 78          
BLAST of NO03G04470 vs. NCBI_GenBank
Match: KHJ49129.1 (cytochrome b5-like Heme/Steroid binding domain protein [Trichuris suis])

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-10
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 0
Query:  164 SPKLEFFRRMFLFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLL 247
            SP L+ F R         E H+ ++S W++++ KVYDVTPFL  HPGG   LLEHAG  DAT  FE + HS+ AK +   +L+
Sbjct:    2 SPALKTFTR------SEVEAHNAKSSTWLVIENKVYDVTPFLEEHPGGIEVLLEHAGR-DATEGFEDAGHSNDAKEIRERFLV 77          
The following BLAST results are available for this feature:
BLAST of NO03G04470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29879.12.500e-5140.69cytochrome b5 [Nannochloropsis gaditana][more]
BAJ93859.14.400e-1135.77predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_021974204.14.400e-1139.66cytochrome b5-like [Helianthus annuus] >OTG21645.1... [more]
XP_020166229.15.700e-1146.15cytochrome b5-like [Aegilops tauschii subsp. tausc... [more]
EJU06455.17.500e-1136.67hypothetical protein DACRYDRAFT_19605 [Dacryopinax... [more]
XP_003626585.17.500e-1149.30cytochrome b5 [Medicago truncatula] >AES82803.1 cy... [more]
EOX95625.19.700e-1150.00Cytochrome B5, n2,ATCB5-E,CB5-E, putative [Theobro... [more]
XP_007051468.29.700e-1150.00PREDICTED: cytochrome b5 [Theobroma cacao][more]
XP_024508038.11.300e-1047.30Cytochrome b5 [Strongyloides ratti] >CEF68838.1 Cy... [more]
KHJ49129.11.300e-1045.78cytochrome b5-like Heme/Steroid binding domain pro... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005449NSK005449Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04470.1NO03G04470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667543gene_1650Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100106g6gene759Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04470.1NO03G04470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04470 ID=NO03G04470|Name=NO03G04470|organism=Nannochloropsis oceanica|type=gene|length=1954bp
CAGACAAAAGACAATCGTGCCTGTATTGGGTTGTACATTGTGGTGGTGTA
GGATGCGGTGAGCTTCGACTTCGAGCAGGCAAATGGGATTGAATGGGCTT
GGCTTCAACTCAAGCACTGTTGCTGCTCGTTGCCCCATCGCTAGAAAGCA
GGAGATCGAAACCAAGGCGTCGTGTGTCTTGCTCATAACACCACACAACT
TCATAGATCTCTGTCGCGACAGGGTAAGCAGGCAGAGGACAGGCTTGAGA
GTCGGTGCATGGACAGCACGGTGAATCTCCACCGCCCAGCTGACCTCCCC
ACCCCTTTGCCTCGCCTTCAAACCAGTTTCTTGCCTGTCCCCCGCAGGCC
ATGGTCGAGATCTCTCCCGACTTTGTTGGCGTGCTGGTGGCGCTGATGGT
CCTGGCGGGCTGGGCTGCCCTTTCCAACATCTTTTTTGGCCATCAAACCT
TCTTCCGCAGAAGCAGCGAAGGCGGGCAGGAAGATGAAGAGGCTTCGTTT
AACGCACATAACTGCCTGCCAACCTTGCCTGGCCCGGACATTGTCCCACA
AGCACCTGCCCCGACTTACACCGAACCACCGTCCACGCCCGATCGACTCC
AAGCCCTCCTACCACAAGACTTAGTCTCTACAGAGGTTCTGACTTTCCTC
TCCCCGTACGACGTGACGCTCGTCCTCCCTGTCTGTCAGTTTCTCAACAC
GACCGGCGAGCAGCCAGCCTGTTGGAATGAGGCATCAAGACGCTCAACTG
CTGCGTGGATACGGCGACTAGACATGCCGAGCACCGTGGAGGAAGGAGGG
AAGGAGATAAAGAGGGGATGGGAATTGGGCGAACGTGAAAGCCCAAAATT
GGAGTTTTTCCGTCGCATGTTCCTCTTTCCCTATCAAAGCTGTGAAGGCC
ACGACACGCGGACGTCCTGCTGGGTAATTGTCAAGGGCAAGgtgcgtaca
ctaagagtagtcggatacatctatttcttgcctccattgctcactacttt
ttgctctccattttcacccacacgcgagcagGTGTATGATGTGACCCCCT
TCCTCTCCTCCCATCCAGGTGGCGCATACACTCTTCTCGAACACGCCGGT
CACGTAGATGCCACCGCCTTCTTCGAAATCAGCAACCACTCCGATGTTGC
CAAGTTAATGATGCGAGAGTACCTCCTCTGGGATCCCTCCCGCGCCCTAG
GGCGAGCAGGCACCATTCGTGGCCTGTTCTATGCTGACCCCTCTCCAGTG
TCATCGGAGCACTCGTCGTGGAAAGCGTCGTTTGTGCACATGCCTATGAT
CCAATCGGCGATTGCATTCATGGGAAGGCAGCAGCGAGGACCGTCACAAT
CATTACAGACAGTGACGACGGGAGAGGACTCGAGGCCGAAACGTAGGTGG
TTGGTGGACGACCGCAGGGTGCTCTACATCAGAAATTTCGCGGGGGATAA
GCAGCCTCCAAATATCGTCAAAATCTTAAGGAAGAAGTGATTTTAGACAG
AGGCAGAGGCAAATACCTGAGGAAGAAGGGCTTATGAATCTGTCTCCCTT
TGGATTTTGAAACGTAATTGCCTGTCATTTAACTTCCCTGCTTGAAAGGA
AGCAAGCTTGGGTCCTGCACATTTGAAAATAGAACACAAAGCACAAAATT
AGAAGAGAAGAAGAGAATTGAAAGCTCTTCTAACAATGCAGCCGTCTCTT
TGCGCTGCCGATGACCTGTGCATCATTCGTCCCGCGAGCAATCAAGTACA
CGTGGGGTCGGTTTTTAGTACAAGCAGAGTTTAATTTAGAAATCCAAACA
AGATGAATGGAAACACAGGCCTATCCAAAGCGTGTACAGAAGGCGATGTA
TCAGAGCATGGGAAGAAAGAAAGATAAAAAAAACAACCGCAGAACGCACA
TTTGCGGTCTATACGTACTTGAAGCAACACTGCTGACCATACTTTCTTCC
CCAT
back to top

protein sequence of NO03G04470.1

>NO03G04470.1-protein ID=NO03G04470.1-protein|Name=NO03G04470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MVEISPDFVGVLVALMVLAGWAALSNIFFGHQTFFRRSSEGGQEDEEASF
NAHNCLPTLPGPDIVPQAPAPTYTEPPSTPDRLQALLPQDLVSTEVLTFL
SPYDVTLVLPVCQFLNTTGEQPACWNEASRRSTAAWIRRLDMPSTVEEGG
KEIKRGWELGERESPKLEFFRRMFLFPYQSCEGHDTRTSCWVIVKGKVYD
VTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWDPS
RALGRAGTIRGLFYADPSPVSSEHSSWKASFVHMPMIQSAIAFMGRQQRG
PSQSLQTVTTGEDSRPKRRWLVDDRRVLYIRNFAGDKQPPNIVKILRKK*
back to top
Synonyms
Publications