NO03G04470.1, NO03G04470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04470.1
Unique NameNO03G04470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1864
Alignment locationchr3:1285582..1287535 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1285582..1287535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04470.1 vs.
Match: EWM29879.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 2.500e-51
Identity = 142/349 (40.69%), Postives = 187/349 (53.58%), Query Frame = 0 
Query:    7 DFVGVLVALMVLAGWAALSNIFFGHQTFFRRSSEGGQEDEEASFNAHNCLPTLPGPDIVPQAPAPTYTEPPSTPDRLQALLPQDLVSTEVLTFLSPYDVTLVLPVCQFLNTTGEQPACWNEASRRSTAAWIRRLDMPSTVEEGGKEIKRGWELGERESPKLEFFRRMFLFPYQSCEGHDTRTSCWVIVKGKVYDVTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMR-EYLLWDPSRALGRAGTIRGLF--------YADPSPVSSEHSSWKASFVHMPMIQSAIAFMGRQQRGPSQSLQTVTTGEDSRPKRRWLVDDRRVLYIRNFAGDKQPPNIVKIL 347
            + +G++VAL+ L G +AL N+ FGH TFFR   E      +AS         +P P   P  P P ++ PPS PDRL   +P++L  +EVL FLSPY+VT +LP  ++ +  GE    W  A  R  A   + L        G +E+       E  +PKLEFFRRMF++PY+    H    +C +IV GKVYDVT FL +HPGG   LLE+ G VDATA FE+S HS VA+  M  +YL+WDP+  LGR GTI GL          A P+P  S+ +        +P +   +  + R  RG         T     P+   LVDDRR L   N  GD+ PPNIVKIL
Sbjct:    5 ELLGLVVALLALLGASALINVLFGHPTFFR---EADHLPSKAS---------VPFPP--PTFPTPVHSPPPSVPDRLPVHIPKELFVSEVLLFLSPYEVTRLLPTSRYFHLAGEHVTYWQHAWTRRLAGMRQPLKRRCEATRGPEELL----THECHNPKLEFFRRMFVYPYELTYAHCHTYTCRIIVHGKVYDVTSFLWAHPGGDAILLEYGGPVDATAVFELSKHSLVARERMHSQYLMWDPTPCLGRGGTIAGLLNPSMWRSAAACPAPSPSQVAQGGRFEGLLPSLLVLLTDLQRFCRGHITRRPVGAT----LPR---LVDDRRHL---NGGGDRSPPNIVKIL 325
The following BLAST results are available for this feature:
BLAST of NO03G04470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29879.12.500e-5140.69cytochrome b5 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04470NO03G04470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04470.1NO03G04470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04470.1.cds1NO03G04470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04470.1.cds2NO03G04470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04470.1 ID=NO03G04470.1|Name=NO03G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp
CAGACAAAAGACAATCGTGCCTGTATTGGGTTGTACATTGTGGTGGTGTA
GGATGCGGTGAGCTTCGACTTCGAGCAGGCAAATGGGATTGAATGGGCTT
GGCTTCAACTCAAGCACTGTTGCTGCTCGTTGCCCCATCGCTAGAAAGCA
GGAGATCGAAACCAAGGCGTCGTGTGTCTTGCTCATAACACCACACAACT
TCATAGATCTCTGTCGCGACAGGGTAAGCAGGCAGAGGACAGGCTTGAGA
GTCGGTGCATGGACAGCACGGTGAATCTCCACCGCCCAGCTGACCTCCCC
ACCCCTTTGCCTCGCCTTCAAACCAGTTTCTTGCCTGTCCCCCGCAGGCC
ATGGTCGAGATCTCTCCCGACTTTGTTGGCGTGCTGGTGGCGCTGATGGT
CCTGGCGGGCTGGGCTGCCCTTTCCAACATCTTTTTTGGCCATCAAACCT
TCTTCCGCAGAAGCAGCGAAGGCGGGCAGGAAGATGAAGAGGCTTCGTTT
AACGCACATAACTGCCTGCCAACCTTGCCTGGCCCGGACATTGTCCCACA
AGCACCTGCCCCGACTTACACCGAACCACCGTCCACGCCCGATCGACTCC
AAGCCCTCCTACCACAAGACTTAGTCTCTACAGAGGTTCTGACTTTCCTC
TCCCCGTACGACGTGACGCTCGTCCTCCCTGTCTGTCAGTTTCTCAACAC
GACCGGCGAGCAGCCAGCCTGTTGGAATGAGGCATCAAGACGCTCAACTG
CTGCGTGGATACGGCGACTAGACATGCCGAGCACCGTGGAGGAAGGAGGG
AAGGAGATAAAGAGGGGATGGGAATTGGGCGAACGTGAAAGCCCAAAATT
GGAGTTTTTCCGTCGCATGTTCCTCTTTCCCTATCAAAGCTGTGAAGGCC
ACGACACGCGGACGTCCTGCTGGGTAATTGTCAAGGGCAAGGTGTATGAT
GTGACCCCCTTCCTCTCCTCCCATCCAGGTGGCGCATACACTCTTCTCGA
ACACGCCGGTCACGTAGATGCCACCGCCTTCTTCGAAATCAGCAACCACT
CCGATGTTGCCAAGTTAATGATGCGAGAGTACCTCCTCTGGGATCCCTCC
CGCGCCCTAGGGCGAGCAGGCACCATTCGTGGCCTGTTCTATGCTGACCC
CTCTCCAGTGTCATCGGAGCACTCGTCGTGGAAAGCGTCGTTTGTGCACA
TGCCTATGATCCAATCGGCGATTGCATTCATGGGAAGGCAGCAGCGAGGA
CCGTCACAATCATTACAGACAGTGACGACGGGAGAGGACTCGAGGCCGAA
ACGTAGGTGGTTGGTGGACGACCGCAGGGTGCTCTACATCAGAAATTTCG
CGGGGGATAAGCAGCCTCCAAATATCGTCAAAATCTTAAGGAAGAAGTGA
TTTTAGACAGAGGCAGAGGCAAATACCTGAGGAAGAAGGGCTTATGAATC
TGTCTCCCTTTGGATTTTGAAACGTAATTGCCTGTCATTTAACTTCCCTG
CTTGAAAGGAAGCAAGCTTGGGTCCTGCACATTTGAAAATAGAACACAAA
GCACAAAATTAGAAGAGAAGAAGAGAATTGAAAGCTCTTCTAACAATGCA
GCCGTCTCTTTGCGCTGCCGATGACCTGTGCATCATTCGTCCCGCGAGCA
ATCAAGTACACGTGGGGTCGGTTTTTAGTACAAGCAGAGTTTAATTTAGA
AATCCAAACAAGATGAATGGAAACACAGGCCTATCCAAAGCGTGTACAGA
AGGCGATGTATCAGAGCATGGGAAGAAAGAAAGATAAAAAAAACAACCGC
AGAACGCACATTTGCGGTCTATACGTACTTGAAGCAACACTGCTGACCAT
ACTTTCTTCCCCAT
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protein sequence of NO03G04470.1

>NO03G04470.1-protein ID=NO03G04470.1-protein|Name=NO03G04470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MVEISPDFVGVLVALMVLAGWAALSNIFFGHQTFFRRSSEGGQEDEEASF
NAHNCLPTLPGPDIVPQAPAPTYTEPPSTPDRLQALLPQDLVSTEVLTFL
SPYDVTLVLPVCQFLNTTGEQPACWNEASRRSTAAWIRRLDMPSTVEEGG
KEIKRGWELGERESPKLEFFRRMFLFPYQSCEGHDTRTSCWVIVKGKVYD
VTPFLSSHPGGAYTLLEHAGHVDATAFFEISNHSDVAKLMMREYLLWDPS
RALGRAGTIRGLFYADPSPVSSEHSSWKASFVHMPMIQSAIAFMGRQQRG
PSQSLQTVTTGEDSRPKRRWLVDDRRVLYIRNFAGDKQPPNIVKILRKK*
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mRNA from alignment at chr3:1285582..1287535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04470.1 ID=NO03G04470.1|Name=NO03G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at chr3:1285582..1287535+ (Nannochloropsis oceanica)
CAGACAAAAGACAATCGTGCCTGTATTGGGTTGTACATTGTGGTGGTGTA
GGATGCGGTGAGCTTCGACTTCGAGCAGGCAAATGGGATTGAATGGGCTT
GGCTTCAACTCAAGCACTGTTGCTGCTCGTTGCCCCATCGCTAGAAAGCA
GGAGATCGAAACCAAGGCGTCGTGTGTCTTGCTCATAACACCACACAACT
TCATAGATCTCTGTCGCGACAGGGTAAGCAGGCAGAGGACAGGCTTGAGA
GTCGGTGCATGGACAGCACGGTGAATCTCCACCGCCCAGCTGACCTCCCC
ACCCCTTTGCCTCGCCTTCAAACCAGTTTCTTGCCTGTCCCCCGCAGGCC
ATGGTCGAGATCTCTCCCGACTTTGTTGGCGTGCTGGTGGCGCTGATGGT
CCTGGCGGGCTGGGCTGCCCTTTCCAACATCTTTTTTGGCCATCAAACCT
TCTTCCGCAGAAGCAGCGAAGGCGGGCAGGAAGATGAAGAGGCTTCGTTT
AACGCACATAACTGCCTGCCAACCTTGCCTGGCCCGGACATTGTCCCACA
AGCACCTGCCCCGACTTACACCGAACCACCGTCCACGCCCGATCGACTCC
AAGCCCTCCTACCACAAGACTTAGTCTCTACAGAGGTTCTGACTTTCCTC
TCCCCGTACGACGTGACGCTCGTCCTCCCTGTCTGTCAGTTTCTCAACAC
GACCGGCGAGCAGCCAGCCTGTTGGAATGAGGCATCAAGACGCTCAACTG
CTGCGTGGATACGGCGACTAGACATGCCGAGCACCGTGGAGGAAGGAGGG
AAGGAGATAAAGAGGGGATGGGAATTGGGCGAACGTGAAAGCCCAAAATT
GGAGTTTTTCCGTCGCATGTTCCTCTTTCCCTATCAAAGCTGTGAAGGCC
ACGACACGCGGACGTCCTGCTGGGTAATTGTCAAGGGCAAGGTGCGTACA
CTAAGAGTAGTCGGATACATCTATTTCTTGCCTCCATTGCTCACTACTTT
TTGCTCTCCATTTTCACCCACACGCGAGCAGGTGTATGATGTGACCCCCT
TCCTCTCCTCCCATCCAGGTGGCGCATACACTCTTCTCGAACACGCCGGT
CACGTAGATGCCACCGCCTTCTTCGAAATCAGCAACCACTCCGATGTTGC
CAAGTTAATGATGCGAGAGTACCTCCTCTGGGATCCCTCCCGCGCCCTAG
GGCGAGCAGGCACCATTCGTGGCCTGTTCTATGCTGACCCCTCTCCAGTG
TCATCGGAGCACTCGTCGTGGAAAGCGTCGTTTGTGCACATGCCTATGAT
CCAATCGGCGATTGCATTCATGGGAAGGCAGCAGCGAGGACCGTCACAAT
CATTACAGACAGTGACGACGGGAGAGGACTCGAGGCCGAAACGTAGGTGG
TTGGTGGACGACCGCAGGGTGCTCTACATCAGAAATTTCGCGGGGGATAA
GCAGCCTCCAAATATCGTCAAAATCTTAAGGAAGAAGTGATTTTAGACAG
AGGCAGAGGCAAATACCTGAGGAAGAAGGGCTTATGAATCTGTCTCCCTT
TGGATTTTGAAACGTAATTGCCTGTCATTTAACTTCCCTGCTTGAAAGGA
AGCAAGCTTGGGTCCTGCACATTTGAAAATAGAACACAAAGCACAAAATT
AGAAGAGAAGAAGAGAATTGAAAGCTCTTCTAACAATGCAGCCGTCTCTT
TGCGCTGCCGATGACCTGTGCATCATTCGTCCCGCGAGCAATCAAGTACA
CGTGGGGTCGGTTTTTAGTACAAGCAGAGTTTAATTTAGAAATCCAAACA
AGATGAATGGAAACACAGGCCTATCCAAAGCGTGTACAGAAGGCGATGTA
TCAGAGCATGGGAAGAAAGAAAGATAAAAAAAACAACCGCAGAACGCACA
TTTGCGGTCTATACGTACTTGAAGCAACACTGCTGACCATACTTTCTTCC
CCAT
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Coding sequence (CDS) from alignment at chr3:1285582..1287535+

>NO03G04470.1 ID=NO03G04470.1|Name=NO03G04470.1|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at chr3:1285582..1287535+ (Nannochloropsis oceanica)
ATGGTCGAGATCTCTCCCGACTTTGTTGGCGTGCTGGTGGCGCTGATGGT
CCTGGCGGGCTGGGCTGCCCTTTCCAACATCTTTTTTGGCCATCAAACCT
TCTTCCGCAGAAGCAGCGAAGGCGGGCAGGAAGATGAAGAGGCTTCGTTT
AACGCACATAACTGCCTGCCAACCTTGCCTGGCCCGGACATTGTCCCACA
AGCACCTGCCCCGACTTACACCGAACCACCGTCCACGCCCGATCGACTCC
AAGCCCTCCTACCACAAGACTTAGTCTCTACAGAGGTTCTGACTTTCCTC
TCCCCGTACGACGTGACGCTCGTCCTCCCTGTCTGTCAGTTTCTCAACAC
GACCGGCGAGCAGCCAGCCTGTTGGAATGAGGCATCAAGACGCTCAACTG
CTGCGTGGATACGGCGACTAGACATGCCGAGCACCGTGGAGGAAGGAGGG
AAGGAGATAAAGAGGGGATGGGAATTGGGCGAACGTGAAAGCCCAAAATT
GGAGTTTTTCCGTCGCATGTTCCTCTTTCCCTATCAAAGCTGTGAAGGCC
ACGACACGCGGACGTCCTGCTGGGTAATTGTCAAGGGCAAGGTGTATGAT
GTGACCCCCTTCCTCTCCTCCCATCCAGGTGGCGCATACACTCTTCTCGA
ACACGCCGGTCACGTAGATGCCACCGCCTTCTTCGAAATCAGCAACCACT
CCGATGTTGCCAAGTTAATGATGCGAGAGTACCTCCTCTGGGATCCCTCC
CGCGCCCTAGGGCGAGCAGGCACCATTCGTGGCCTGTTCTATGCTGACCC
CTCTCCAGTGTCATCGGAGCACTCGTCGTGGAAAGCGTCGTTTGTGCACA
TGCCTATGATCCAATCGGCGATTGCATTCATGGGAAGGCAGCAGCGAGGA
CCGTCACAATCATTACAGACAGTGACGACGGGAGAGGACTCGAGGCCGAA
ACGTAGGTGGTTGGTGGACGACCGCAGGGTGCTCTACATCAGAAATTTCG
CGGGGGATAAGCAGCCTCCAAATATCGTCAAAATCTTAAGGAAGAAGTGA
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Synonyms
Publications