NO03G04190, NO03G04190 (gene) Nannochloropsis oceanica

Overview
NameNO03G04190
Unique NameNO03G04190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr3:1210512..1211585 +

Link to JBrowse

Properties
Property NameValue
Description6,7-dimethyl-8-ribityllumazine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1210512..1211585 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009349riboflavin synthase complex
GO:0009349riboflavin synthase complex
Vocabulary: Biological Process
TermDefinition
GO:0009231riboflavin biosynthetic process
GO:0009231riboflavin biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036467LS/RS_sf
IPR002180DMRL_synthase
Homology
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BLAST of NO03G04190 vs. NCBI_GenBank
Match: EWM29840.1 (6,7-dimethyl-8-ribityllumazine synthase [Nannochloropsis gaditana])

HSP 1 Score: 257.3 bits (656), Expect = 7.000e-65
Identity = 175/369 (47.43%), Postives = 213/369 (57.72%), Query Frame = 0 
Query:    1 MSTMNSTSMSVNRPTTKVIHAPGGASSISIFGEQEQKPAAGGSGAKPTFKANFEPSFEISAPAVP---MVEKAALTPEPVVVVVETPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPA---------PPTAIDAQAIGVVYASSSPLQRTLKTRTLDALAVRGVATATMEVGDVLQLPLAAKRMAATGTYAAVVVVAILTEDSNFAAKEVAGAVTSGLVSVSTSASLTVVPGLIFAASEKEAVTMMEKKPEAWADSALALAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXPHAEVVPEACIVNTAANATPEKETVATPSVTEQMGELSLGAKARARAAAFAAENDAPIRRPSHRGGGPSSIIFG 358
            MSTMNSTSMSVNRPTTKV HAPGGASSISIFGE EQ+PAAGGSGA+PTFKA+FEPSFE SAP +P    V+KA +  EPV    E  A                                  A         P        I VV+A++S LQ  LK RTL+  A +GV +  +EV D+LQLPLAAKRMAAT  YAA++  A +TE+ +F AKE+AGAV +GLV VS + S+ V+PGLI A SE E + MME+KP AW  SAL+ ++G                              E  P+A  +N      PEKE +  PS TE +GE SLG  A+A AA   +E +AP RRP+HRG GPSSI+FG
Sbjct:    1 MSTMNSTSMSVNRPTTKVTHAPGGASSISIFGEPEQRPAAGGSGARPTFKASFEPSFETSAPPLPTSESVKKAVI--EPVHAPPEDSAAGQALPLTQESDKTSVATPADVPHSNVISSSKTAATTMNDCGISPNNTSAGVGIYVVFAATSHLQTALKARTLEMAAAQGVPSGAVEVCDLLQLPLAAKRMAATEKYAAIIATAAITEEDSFVAKEMAGAVANGLVQVSCATSVPVIPGLIIARSEAEVLAMMEEKPAAWVASALSFSQGLDPAVEVMDARGAAGAVEASFPAKTA---EESAPDA--IN-----APEKEVITAPSFTEPVGEASLGVIAKATAAFVPSEGNAPPRRPNHRGAGPSSIVFG 357
The following BLAST results are available for this feature:
BLAST of NO03G04190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29840.17.000e-6547.436,7-dimethyl-8-ribityllumazine synthase [Nannochlo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005468NSK005468Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04190.1NO03G04190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572885gene_1616Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g2gene777Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04190.1NO03G04190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04190 ID=NO03G04190|Name=NO03G04190|organism=Nannochloropsis oceanica|type=gene|length=1074bp
ATGTCGACCATGAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAA
AGTGATCCATGCCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGC
AGGAGCAGAAGCCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAG
GCCAACTTTGAGCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGT
TGAAAAGGCTGCTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACAC
CAGCCGTTGCTGCCGCAACAACTGATAAAATGACGATGACCCCTGCAACC
CTGTCGCCCTCCACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAA
CACACCTGCCCCTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCT
ATGCCAGCAGCAGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGAC
GCGTTGGCCGTTCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGT
GCTGCAACTGCCATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATG
CCGCTGTTGTTGTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCT
AAGGAGGTGGCAGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTC
GGCGTCATTAACTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAG
AGGCCGTGACAATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCC
CTAGCGCTTGCCAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAG
CAGCAGCAGCAGCGACACCACCACCACTATTACCACAGCGGCTGTCGCCC
CTCACGCGGAGGTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAAT
GCTACGCCGGAAAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAAT
GGGTGAGTTGTCCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTG
CGGCAGAGAACGACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGT
CCTAGCTCTATTATCTTTGGTTAG
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protein sequence of NO03G04190.1

>NO03G04190.1-protein ID=NO03G04190.1-protein|Name=NO03G04190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSTMNSTSMSVNRPTTKVIHAPGGASSISIFGEQEQKPAAGGSGAKPTFK
ANFEPSFEISAPAVPMVEKAALTPEPVVVVVETPAVAAATTDKMTMTPAT
LSPSTKTAATTTTSECNTPAPPTAIDAQAIGVVYASSSPLQRTLKTRTLD
ALAVRGVATATMEVGDVLQLPLAAKRMAATGTYAAVVVVAILTEDSNFAA
KEVAGAVTSGLVSVSTSASLTVVPGLIFAASEKEAVTMMEKKPEAWADSA
LALAKGGDSCIVTTISSSSSSDTTTTITTAAVAPHAEVVPEACIVNTAAN
ATPEKETVATPSVTEQMGELSLGAKARARAAAFAAENDAPIRRPSHRGGG
PSSIIFG*
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Synonyms
Publications