NO03G04190.1, NO03G04190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04190.1
Unique NameNO03G04190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr3:1210512..1211585 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1210512..1211585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04190.1 vs.
Match: EWM29840.1 (6,7-dimethyl-8-ribityllumazine synthase [Nannochloropsis gaditana])

HSP 1 Score: 266.2 bits (679), Expect = 1.500e-67
Identity = 192/371 (51.75%), Postives = 242/371 (65.23%), Query Frame = 0 
Query:    1 MSTMNSTSMSVNRPTTKVIHAPGGASSISIFGEQEQKPAAGGSGAKPTFKANFEPSFEISAPAVPM---VEKAALTPEPVVVVVETPAVAAAT-----TDKMTM-TPATLS-----PSTKTAATTTTSECNTPAPPTAIDAQAIGVVYASSSPLQRTLKTRTLDALAVRGVATATMEVGDVLQLPLAAKRMAATGTYAAVVVVAILTEDSNFAAKEVAGAVTSGLVSVSTSASLTVVPGLIFAASEKEAVTMMEKKPEAWADSALALAKGGDSCIVTTISSSSSSDTTTTITTAAVAPHAEVVPEACIVNTAANATPEKETVATPSVTEQMGELSLGAKARARAAAFAAENDAPIRRPSHRGGGPSSIIFG 358
            MSTMNSTSMSVNRPTTKV HAPGGASSISIFGE EQ+PAAGGSGA+PTFKA+FEPSFE SAP +P    V+KA +  EPV    E  A   A      +DK ++ TPA +       S+KTAATT  ++C   +P        I VV+A++S LQ  LK RTL+  A +GV +  +EV D+LQLPLAAKRMAAT  YAA++  A +TE+ +F AKE+AGAV +GLV VS + S+ V+PGLI A SE E + MME+KP AW  SAL+ ++G D   V  + +  ++        A  A   E  P+A  +N      PEKE +  PS TE +GE SLG  A+A AA   +E +AP RRP+HRG GPSSI+FG
Sbjct:    1 MSTMNSTSMSVNRPTTKVTHAPGGASSISIFGEPEQRPAAGGSGARPTFKASFEPSFETSAPPLPTSESVKKAVI--EPVHAPPEDSAAGQALPLTQESDKTSVATPADVPHSNVISSSKTAATTM-NDCGI-SPNNTSAGVGIYVVFAATSHLQTALKARTLEMAAAQGVPSGAVEVCDLLQLPLAAKRMAATEKYAAIIATAAITEEDSFVAKEMAGAVANGLVQVSCATSVPVIPGLIIARSEAEVLAMMEEKPAAWVASALSFSQGLDPA-VEVMDARGAAGAVEASFPAKTA--EESAPDA--IN-----APEKEVITAPSFTEPVGEASLGVIAKATAAFVPSEGNAPPRRPNHRGAGPSSIVFG 357
The following BLAST results are available for this feature:
BLAST of NO03G04190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29840.11.500e-6751.756,7-dimethyl-8-ribityllumazine synthase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04190NO03G04190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04190.1NO03G04190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04190.1.cds1NO03G04190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04190.1 ID=NO03G04190.1|Name=NO03G04190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGTCGACCATGAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAA
AGTGATCCATGCCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGC
AGGAGCAGAAGCCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAG
GCCAACTTTGAGCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGT
TGAAAAGGCTGCTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACAC
CAGCCGTTGCTGCCGCAACAACTGATAAAATGACGATGACCCCTGCAACC
CTGTCGCCCTCCACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAA
CACACCTGCCCCTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCT
ATGCCAGCAGCAGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGAC
GCGTTGGCCGTTCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGT
GCTGCAACTGCCATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATG
CCGCTGTTGTTGTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCT
AAGGAGGTGGCAGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTC
GGCGTCATTAACTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAG
AGGCCGTGACAATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCC
CTAGCGCTTGCCAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAG
CAGCAGCAGCAGCGACACCACCACCACTATTACCACAGCGGCTGTCGCCC
CTCACGCGGAGGTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAAT
GCTACGCCGGAAAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAAT
GGGTGAGTTGTCCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTG
CGGCAGAGAACGACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGT
CCTAGCTCTATTATCTTTGGTTAG
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protein sequence of NO03G04190.1

>NO03G04190.1-protein ID=NO03G04190.1-protein|Name=NO03G04190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSTMNSTSMSVNRPTTKVIHAPGGASSISIFGEQEQKPAAGGSGAKPTFK
ANFEPSFEISAPAVPMVEKAALTPEPVVVVVETPAVAAATTDKMTMTPAT
LSPSTKTAATTTTSECNTPAPPTAIDAQAIGVVYASSSPLQRTLKTRTLD
ALAVRGVATATMEVGDVLQLPLAAKRMAATGTYAAVVVVAILTEDSNFAA
KEVAGAVTSGLVSVSTSASLTVVPGLIFAASEKEAVTMMEKKPEAWADSA
LALAKGGDSCIVTTISSSSSSDTTTTITTAAVAPHAEVVPEACIVNTAAN
ATPEKETVATPSVTEQMGELSLGAKARARAAAFAAENDAPIRRPSHRGGG
PSSIIFG*
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mRNA from alignment at chr3:1210512..1211585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04190.1 ID=NO03G04190.1|Name=NO03G04190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at chr3:1210512..1211585+ (Nannochloropsis oceanica)
ATGTCGACCATGAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAA
AGTGATCCATGCCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGC
AGGAGCAGAAGCCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAG
GCCAACTTTGAGCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGT
TGAAAAGGCTGCTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACAC
CAGCCGTTGCTGCCGCAACAACTGATAAAATGACGATGACCCCTGCAACC
CTGTCGCCCTCCACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAA
CACACCTGCCCCTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCT
ATGCCAGCAGCAGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGAC
GCGTTGGCCGTTCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGT
GCTGCAACTGCCATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATG
CCGCTGTTGTTGTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCT
AAGGAGGTGGCAGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTC
GGCGTCATTAACTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAG
AGGCCGTGACAATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCC
CTAGCGCTTGCCAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAG
CAGCAGCAGCAGCGACACCACCACCACTATTACCACAGCGGCTGTCGCCC
CTCACGCGGAGGTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAAT
GCTACGCCGGAAAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAAT
GGGTGAGTTGTCCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTG
CGGCAGAGAACGACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGT
CCTAGCTCTATTATCTTTGGTTAG
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Coding sequence (CDS) from alignment at chr3:1210512..1211585+

>NO03G04190.1 ID=NO03G04190.1|Name=NO03G04190.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr3:1210512..1211585+ (Nannochloropsis oceanica)
ATGTCGACCATGAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAA
AGTGATCCATGCCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGC
AGGAGCAGAAGCCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAG
GCCAACTTTGAGCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGT
TGAAAAGGCTGCTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACAC
CAGCCGTTGCTGCCGCAACAACTGATAAAATGACGATGACCCCTGCAACC
CTGTCGCCCTCCACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAA
CACACCTGCCCCTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCT
ATGCCAGCAGCAGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGAC
GCGTTGGCCGTTCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGT
GCTGCAACTGCCATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATG
CCGCTGTTGTTGTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCT
AAGGAGGTGGCAGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTC
GGCGTCATTAACTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAG
AGGCCGTGACAATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCC
CTAGCGCTTGCCAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAG
CAGCAGCAGCAGCGACACCACCACCACTATTACCACAGCGGCTGTCGCCC
CTCACGCGGAGGTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAAT
GCTACGCCGGAAAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAAT
GGGTGAGTTGTCCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTG
CGGCAGAGAACGACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGT
CCTAGCTCTATTATCTTTGGTTAG
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Synonyms
Publications