NO03G04110, NO03G04110 (gene) Nannochloropsis oceanica

Overview
NameNO03G04110
Unique NameNO03G04110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1432
Alignment locationchr3:1195189..1196620 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1195189..1196620 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO03G04110 vs. NCBI_GenBank
Match: EWM29874.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 4.100e-34
Identity = 166/300 (55.33%), Postives = 198/300 (66.00%), Query Frame = 0 
Query:    7 VCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGRIITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWCATIASFSVRTKALLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMNTDDGCIWTAALPENGREMERCRALLKDEVFRREVREVLMEARRR--------FFNVAKDQNEGNDHERKGIEEMKRPRPREGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI 299
            V  AA         A+ ++TKALAAA+RNDI  L  +W    G+ IT      +G+I+H+A K ++ KSV WLLEHGADVNA+DR+GETPLCWCATIA FS RT  L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGM T+DG  WT ALPE+ +EMERC   LK E+FRREVRE+    R R         +   +    GN  ER  + E  R   R    ++    ED    +  +   G +V+  LVD+ DD MF +CL ++
Sbjct:    7 VLPAANVSYRKGKSAAHVWTKALAAAERNDITTLNKLWGMPEGKFITRNFQGENGHILHYAAKRVKAKSVAWLLEHGADVNAVDREGETPLCWCATIAPFSRRTGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMCTNDGQTWTNALPEDRKEMERCEVSLKAEIFRREVREIFWRERVRRQRTHDKSLWTDLEKWKSGN--ERTVLSEESRRTLRARGMQA----EDRRRKDNPQVSNGLDVSWILVDMEDDEMFSKCLGFL 300
The following BLAST results are available for this feature:
BLAST of NO03G04110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29874.14.100e-3455.33ankyrin repeat protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005461NSK005461Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04110.1NO03G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572867gene_1607Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100106g19gene771Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04110.1NO03G04110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04110 ID=NO03G04110|Name=NO03G04110|organism=Nannochloropsis oceanica|type=gene|length=1432bp
ACAGCGACAGGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGA
GCAGCCACATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCT
GAAGCTTCCACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGC
CGCCCAACGCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATG
GAGGCAGAATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATT
CACCACGCAGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGA
ACATGGAGCGGACGTGAATGCAATTGATCGCGACGGCGAGgtacgtcttt
ctttctgtctcatttgttttcttctgctgattgatctcgcgtttctcctg
gaaccgtggtgccgtaaccaacccttcatgcaccactcctccatctcttt
ccccccgacagACTCCCCTTTGTTGGTGCGCAACCATCGCTTCCTTCTCT
GTCCGCACGAAAGCGCTCCTCCGACTTCTCGTCGACGCAGGGGCTGACCC
CAATTGGCAAGACCTCTATGGCTATACTCCTCTCACACACGCTGTCGTGC
GCGGCTCAGTCGACGCCACCCGTCGGGCCCGCGTTCAAGCGCTGCTTGAA
TTAGGCGCGGACCCGCGCGTGAGGGACTATGACGGAAAGGAACCGCTGGA
TTACCTAGGAATGAACACAGATGATGGATGCATATGGACGGCAGCCTTAC
CAGAGAATGGGCGGGAGATGGAACGCTGTCGGGCATTGTTGAAAGATGAG
GTGTTTAGGAGGGAAGTGCGTGAGGTTTTGATGGAGGCGCGTCGTCGTTT
TTTCAACGTGGCTAAAGACCAAAACGAAGGGAATGATCATGAAAGAAAAG
GCATAGAAGAGATGAAGAGACCACGACCGAGAGAAGGAAGCTGGAGGAGC
GTGGCCGTGGAAGAGGATCACGTGGAGGTGGAGAAAGGCAGGAATGAGGA
GGGGGGGGAGGTGGCCAGGCGGTTGGTGGACTTGCGTGACGACATGATGT
TTATGAGATGCTTGCAATATATTTGAATTGTTGGGCTTATAGACAAGCGG
TGTAAAGAATGCTTGGCCTGTGTTTATACATATACATATACATAAATATT
TTGATCCGACGTGCAAATATACATGCACTCCTGTCGGTTTGAGGAGAGCG
ATACCGTGAATGAGATATTTGAATGCAAAAACAATGAGGGAAGATGTAGA
TTCTGGATTGCAGCGATGCCAGGAAAGAGGGGCGGAGAGGACTAAAGACG
GAACATGTCGAAAAAGATGTACCACAGAATAAGGATTACTTCCATTTTCA
TGATTAGACGGGTTTAAAGCTTTCTAGCCGCGTATGCACGGTGAAAAAGG
AATAAGGGGAAAGGCAAATGTTTATAACGAAA
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protein sequence of NO03G04110.1

>NO03G04110.1-protein ID=NO03G04110.1-protein|Name=NO03G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSAAAVVCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGR
IITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWC
ATIASFSVRTKALLRLLVDAGADPNWQDLYGYTPLTHAVVRGSVDATRRA
RVQALLELGADPRVRDYDGKEPLDYLGMNTDDGCIWTAALPENGREMERC
RALLKDEVFRREVREVLMEARRRFFNVAKDQNEGNDHERKGIEEMKRPRP
REGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI*
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Synonyms
Publications