NO03G04110.1, NO03G04110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04110.1
Unique NameNO03G04110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1311
Alignment locationchr3:1195189..1196620 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1195189..1196620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04110.1 vs.
Match: EWM29874.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 1.000e-69
Identity = 151/300 (50.33%), Postives = 194/300 (64.67%), Query Frame = 0 
Query:    7 VCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGRIITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWCATIASFSVRTKALLRLLVDAGADPNWQDLYGYTPLTHAVVRGSVDATRRARVQALLELGADPRVRDYDGKEPLDYLGMNTDDGCIWTAALPENGREMERCRALLKDEVFRREVREVLMEARRR--------FFNVAKDQNEGNDHERKGIEEMKRPRPREGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI 299
            V  AA         A+ ++TKALAAA+RNDI  L  +W    G+ IT      +G+I+H+A K ++ KSV WLLEHGADVNA+DR+GETPLCWCATIA FS RT  LL+ L++AGA+PN QD +GYTPLTHAVVRG+VDA RRARV+ LL+LGA+P VRD +GK+PLDYLGM T+DG  WT ALPE+ +EMERC   LK E+FRREVRE+    R R         +   +    GN  ER  + E  R   R    ++    ED    +  +   G +V+  LVD+ DD MF +CL ++
Sbjct:    7 VLPAANVSYRKGKSAAHVWTKALAAAERNDITTLNKLWGMPEGKFITRNFQGENGHILHYAAKRVKAKSVAWLLEHGADVNAVDREGETPLCWCATIAPFSRRTGVLLKFLIEAGANPNHQDTHGYTPLTHAVVRGAVDAVRRARVEMLLKLGANPCVRDREGKQPLDYLGMCTNDGQTWTNALPEDRKEMERCEVSLKAEIFRREVREIFWRERVRRQRTHDKSLWTDLEKWKSGN--ERTVLSEESRRTLRARGMQA----EDRRRKDNPQVSNGLDVSWILVDMEDDEMFSKCLGFL 300
The following BLAST results are available for this feature:
BLAST of NO03G04110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29874.11.000e-6950.33ankyrin repeat protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04110NO03G04110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04110.1NO03G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04110.1.cds1NO03G04110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04110.1.cds2NO03G04110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04110.1 ID=NO03G04110.1|Name=NO03G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp
ACAGCGACAGGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGA
GCAGCCACATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCT
GAAGCTTCCACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGC
CGCCCAACGCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATG
GAGGCAGAATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATT
CACCACGCAGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGA
ACATGGAGCGGACGTGAATGCAATTGATCGCGACGGCGAGACTCCCCTTT
GTTGGTGCGCAACCATCGCTTCCTTCTCTGTCCGCACGAAAGCGCTCCTC
CGACTTCTCGTCGACGCAGGGGCTGACCCCAATTGGCAAGACCTCTATGG
CTATACTCCTCTCACACACGCTGTCGTGCGCGGCTCAGTCGACGCCACCC
GTCGGGCCCGCGTTCAAGCGCTGCTTGAATTAGGCGCGGACCCGCGCGTG
AGGGACTATGACGGAAAGGAACCGCTGGATTACCTAGGAATGAACACAGA
TGATGGATGCATATGGACGGCAGCCTTACCAGAGAATGGGCGGGAGATGG
AACGCTGTCGGGCATTGTTGAAAGATGAGGTGTTTAGGAGGGAAGTGCGT
GAGGTTTTGATGGAGGCGCGTCGTCGTTTTTTCAACGTGGCTAAAGACCA
AAACGAAGGGAATGATCATGAAAGAAAAGGCATAGAAGAGATGAAGAGAC
CACGACCGAGAGAAGGAAGCTGGAGGAGCGTGGCCGTGGAAGAGGATCAC
GTGGAGGTGGAGAAAGGCAGGAATGAGGAGGGGGGGGAGGTGGCCAGGCG
GTTGGTGGACTTGCGTGACGACATGATGTTTATGAGATGCTTGCAATATA
TTTGAATTGTTGGGCTTATAGACAAGCGGTGTAAAGAATGCTTGGCCTGT
GTTTATACATATACATATACATAAATATTTTGATCCGACGTGCAAATATA
CATGCACTCCTGTCGGTTTGAGGAGAGCGATACCGTGAATGAGATATTTG
AATGCAAAAACAATGAGGGAAGATGTAGATTCTGGATTGCAGCGATGCCA
GGAAAGAGGGGCGGAGAGGACTAAAGACGGAACATGTCGAAAAAGATGTA
CCACAGAATAAGGATTACTTCCATTTTCATGATTAGACGGGTTTAAAGCT
TTCTAGCCGCGTATGCACGGTGAAAAAGGAATAAGGGGAAAGGCAAATGT
TTATAACGAAA
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protein sequence of NO03G04110.1

>NO03G04110.1-protein ID=NO03G04110.1-protein|Name=NO03G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSAAAVVCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGR
IITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWC
ATIASFSVRTKALLRLLVDAGADPNWQDLYGYTPLTHAVVRGSVDATRRA
RVQALLELGADPRVRDYDGKEPLDYLGMNTDDGCIWTAALPENGREMERC
RALLKDEVFRREVREVLMEARRRFFNVAKDQNEGNDHERKGIEEMKRPRP
REGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI*
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mRNA from alignment at chr3:1195189..1196620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04110.1 ID=NO03G04110.1|Name=NO03G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at chr3:1195189..1196620+ (Nannochloropsis oceanica)
ACAGCGACAGGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGA
GCAGCCACATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCT
GAAGCTTCCACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGC
CGCCCAACGCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATG
GAGGCAGAATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATT
CACCACGCAGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGA
ACATGGAGCGGACGTGAATGCAATTGATCGCGACGGCGAGGTACGTCTTT
CTTTCTGTCTCATTTGTTTTCTTCTGCTGATTGATCTCGCGTTTCTCCTG
GAACCGTGGTGCCGTAACCAACCCTTCATGCACCACTCCTCCATCTCTTT
CCCCCCGACAGACTCCCCTTTGTTGGTGCGCAACCATCGCTTCCTTCTCT
GTCCGCACGAAAGCGCTCCTCCGACTTCTCGTCGACGCAGGGGCTGACCC
CAATTGGCAAGACCTCTATGGCTATACTCCTCTCACACACGCTGTCGTGC
GCGGCTCAGTCGACGCCACCCGTCGGGCCCGCGTTCAAGCGCTGCTTGAA
TTAGGCGCGGACCCGCGCGTGAGGGACTATGACGGAAAGGAACCGCTGGA
TTACCTAGGAATGAACACAGATGATGGATGCATATGGACGGCAGCCTTAC
CAGAGAATGGGCGGGAGATGGAACGCTGTCGGGCATTGTTGAAAGATGAG
GTGTTTAGGAGGGAAGTGCGTGAGGTTTTGATGGAGGCGCGTCGTCGTTT
TTTCAACGTGGCTAAAGACCAAAACGAAGGGAATGATCATGAAAGAAAAG
GCATAGAAGAGATGAAGAGACCACGACCGAGAGAAGGAAGCTGGAGGAGC
GTGGCCGTGGAAGAGGATCACGTGGAGGTGGAGAAAGGCAGGAATGAGGA
GGGGGGGGAGGTGGCCAGGCGGTTGGTGGACTTGCGTGACGACATGATGT
TTATGAGATGCTTGCAATATATTTGAATTGTTGGGCTTATAGACAAGCGG
TGTAAAGAATGCTTGGCCTGTGTTTATACATATACATATACATAAATATT
TTGATCCGACGTGCAAATATACATGCACTCCTGTCGGTTTGAGGAGAGCG
ATACCGTGAATGAGATATTTGAATGCAAAAACAATGAGGGAAGATGTAGA
TTCTGGATTGCAGCGATGCCAGGAAAGAGGGGCGGAGAGGACTAAAGACG
GAACATGTCGAAAAAGATGTACCACAGAATAAGGATTACTTCCATTTTCA
TGATTAGACGGGTTTAAAGCTTTCTAGCCGCGTATGCACGGTGAAAAAGG
AATAAGGGGAAAGGCAAATGTTTATAACGAAA
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Coding sequence (CDS) from alignment at chr3:1195189..1196620+

>NO03G04110.1 ID=NO03G04110.1|Name=NO03G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr3:1195189..1196620+ (Nannochloropsis oceanica)
ATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCTGAAGCTTC
CACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGCCGCCCAAC
GCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATGGAGGCAGA
ATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATTCACCACGC
AGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGAACATGGAG
CGGACGTGAATGCAATTGATCGCGACGGCGAGACTCCCCTTTGTTGGTGC
GCAACCATCGCTTCCTTCTCTGTCCGCACGAAAGCGCTCCTCCGACTTCT
CGTCGACGCAGGGGCTGACCCCAATTGGCAAGACCTCTATGGCTATACTC
CTCTCACACACGCTGTCGTGCGCGGCTCAGTCGACGCCACCCGTCGGGCC
CGCGTTCAAGCGCTGCTTGAATTAGGCGCGGACCCGCGCGTGAGGGACTA
TGACGGAAAGGAACCGCTGGATTACCTAGGAATGAACACAGATGATGGAT
GCATATGGACGGCAGCCTTACCAGAGAATGGGCGGGAGATGGAACGCTGT
CGGGCATTGTTGAAAGATGAGGTGTTTAGGAGGGAAGTGCGTGAGGTTTT
GATGGAGGCGCGTCGTCGTTTTTTCAACGTGGCTAAAGACCAAAACGAAG
GGAATGATCATGAAAGAAAAGGCATAGAAGAGATGAAGAGACCACGACCG
AGAGAAGGAAGCTGGAGGAGCGTGGCCGTGGAAGAGGATCACGTGGAGGT
GGAGAAAGGCAGGAATGAGGAGGGGGGGGAGGTGGCCAGGCGGTTGGTGG
ACTTGCGTGACGACATGATGTTTATGAGATGCTTGCAATATATTTGA
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Synonyms
Publications