NO03G03950, NO03G03950 (gene) Nannochloropsis oceanica

Overview
NameNO03G03950
Unique NameNO03G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr3:1154500..1156083 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1154500..1156083 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
Homology
The following BLAST results are available for this feature:
BLAST of NO03G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005501NSK005501Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03950.1NO03G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667498gene_1591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03950.1NO03G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03950 ID=NO03G03950|Name=NO03G03950|organism=Nannochloropsis oceanica|type=gene|length=1584bp
AAAATCATACCCGGCATCGGCAACGGCATCAGGTTAAAGGTCAAGCAGAC
AGCCCATCTACACACTTGGGGCAGCAACGCAGCACCATGAGCCCTTGGTC
CGGCACATTTCTTGCACCCTTCAACAATGGACATGCGTCTGGAACCTTAG
TCTTGTCGCTTTGATCTGGTTACGACAAATGTACTCACCTAAGCCTTCCC
ACTCCACTCTCACCACCGAAAGAGTACTTCGCCACAAGTTTGTGTACGAA
CCACCCACGCATTCAACAGCAGCTACCATGTCCCGCTTCGACATGGACGA
TGACTCAGATGAAGACTCTTCGGGCGGCCTGAGCAGCCAGCTCCCGACAG
AACCTCCCTTTCTTGCGTACATGCATGACACCGAGGCAGGCGAACAAGAC
ATCCGGGACTTCTTCGGCTCCGAGCTCGAGGTCATCTCCGTGACGGTGGC
CAAGAACGAAGCAAAAGTCGAATTCAAGGACCGCGATACTTTGGCCCGCT
CCTTGTTTTACGGGGGGAGATTGCTGAAGGGACGCGAGGCAAAGATTGCC
CTTTCGGCTGGAGATGCCCCTCCTCCCCACCTTACTCCGCCGCCTCCTCC
TCCGCCTCCTCCCGCGCCTGTCGCGGAAAACATTTCGTCCTTTTCAGCGC
AAAACGGCAACGATGGTGGCGGCCGTGGTGCGGGAGCTGGGCGTGGGAGG
GGTGGAGGAGGAAGGTGGTCAAGTGGGAGGGAGAGCAGGGACGCGGAAGG
AAGGAGGGAGGGAGGGAGAGTAGGACGCAGTGGACCCCGTAGCAGCATTT
TTGGACGGGACAGTGCACCTAGGCGTCCGCCGCTTTCAGCAAAACACGAA
GATGGGGAAGGGGGGGAGAAGGAAGGGGAGGCTGCAGAGGGGGGCGAGAA
GAAGGAGCGCCCCCGCTTGCAATTGAAGCCACGAAGCAAGCCATTGGGGG
AAGGAGGGGGGGAGAGCGGGGCAAAGCCGAGTATTTTTGGGGGAGGTAAG
CCGCATGATGAGGTGGCATTCGAGAAAAAATGGCAGGAGAAGCACAAGGA
TGATCCGAAGCCCGTGTTGTCGGCGGGGGAGGAGGACACCGGGGAGGGAG
AGCGAGGGCCCAGTGGGAATAGGTACAGCAAGCGGGGCGATAGGACATCG
AGGCCGCCGGGATGGGAGGAAGGTGCAACGGGAGCAAGAGCGCTCACGGG
AGGATCGACGCGGATGAGGAGTGGAAGTTGGGGGAGTGGCAGGAAGGAGG
GGGCGGAGGGAGGGCGAGGAGGAGCTGGAGGACGGGGGGCAGCTGGATCT
GGGCGTGGGCCAACCCCGAATAAAAAGCCGACGGTGAAGAAGGCGGCTAT
AGGAGCGGAGGAATGGAAGGAGGTGGAGCATGTGACGGCGAAGAAGAGGG
TTGAGGGACGGTCGCACAGGGGAGGAGGGGAGGGAGGGGAAGAGGAGGAT
AAGATGACAAGGGCGGTGGGGGGCGCGTTCGCGGCGTTGAACATGGATGA
GGATAGTGACAGGGACTAAGGGATGATTGAGCAGTTGAATGGGAGGGTAT
CCTGATTCCGGCGTCGGCTGGTTTTAGACGGGAA
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protein sequence of NO03G03950.1

>NO03G03950.1-protein ID=NO03G03950.1-protein|Name=NO03G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MYSPKPSHSTLTTERVLRHKFVYEPPTHSTAATMSRFDMDDDSDEDSSGG
LSSQLPTEPPFLAYMHDTEAGEQDIRDFFGSELEVISVTVAKNEAKVEFK
DRDTLARSLFYGGRLLKGREAKIALSAGDAPPPHLTPPPPPPPPPAPVAE
NISSFSAQNGNDGGGRGAGAGRGRGGGGRWSSGRESRDAEGRREGGRVGR
SGPRSSIFGRDSAPRRPPLSAKHEDGEGGEKEGEAAEGGEKKERPRLQLK
PRSKPLGEGGGESGAKPSIFGGGKPHDEVAFEKKWQEKHKDDPKPVLSAG
EEDTGEGERGPSGNRYSKRGDRTSRPPGWEEGATGARALTGGSTRMRSGS
WGSGRKEGAEGGRGGAGGRGAAGSGRGPTPNKKPTVKKAAIGAEEWKEVE
HVTAKKRVEGRSHRGGGEGGEEEDKMTRAVGGAFAALNMDEDSDRD*
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Synonyms
Publications