NO03G03950.1, NO03G03950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03950.1
Unique NameNO03G03950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr3:1154500..1156083 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1154500..1156083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G03950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03950NO03G03950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03950.1NO03G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03950.1.cds1NO03G03950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03950.1 ID=NO03G03950.1|Name=NO03G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp
AAAATCATACCCGGCATCGGCAACGGCATCAGGTTAAAGGTCAAGCAGAC
AGCCCATCTACACACTTGGGGCAGCAACGCAGCACCATGAGCCCTTGGTC
CGGCACATTTCTTGCACCCTTCAACAATGGACATGCGTCTGGAACCTTAG
TCTTGTCGCTTTGATCTGGTTACGACAAATGTACTCACCTAAGCCTTCCC
ACTCCACTCTCACCACCGAAAGAGTACTTCGCCACAAGTTTGTGTACGAA
CCACCCACGCATTCAACAGCAGCTACCATGTCCCGCTTCGACATGGACGA
TGACTCAGATGAAGACTCTTCGGGCGGCCTGAGCAGCCAGCTCCCGACAG
AACCTCCCTTTCTTGCGTACATGCATGACACCGAGGCAGGCGAACAAGAC
ATCCGGGACTTCTTCGGCTCCGAGCTCGAGGTCATCTCCGTGACGGTGGC
CAAGAACGAAGCAAAAGTCGAATTCAAGGACCGCGATACTTTGGCCCGCT
CCTTGTTTTACGGGGGGAGATTGCTGAAGGGACGCGAGGCAAAGATTGCC
CTTTCGGCTGGAGATGCCCCTCCTCCCCACCTTACTCCGCCGCCTCCTCC
TCCGCCTCCTCCCGCGCCTGTCGCGGAAAACATTTCGTCCTTTTCAGCGC
AAAACGGCAACGATGGTGGCGGCCGTGGTGCGGGAGCTGGGCGTGGGAGG
GGTGGAGGAGGAAGGTGGTCAAGTGGGAGGGAGAGCAGGGACGCGGAAGG
AAGGAGGGAGGGAGGGAGAGTAGGACGCAGTGGACCCCGTAGCAGCATTT
TTGGACGGGACAGTGCACCTAGGCGTCCGCCGCTTTCAGCAAAACACGAA
GATGGGGAAGGGGGGGAGAAGGAAGGGGAGGCTGCAGAGGGGGGCGAGAA
GAAGGAGCGCCCCCGCTTGCAATTGAAGCCACGAAGCAAGCCATTGGGGG
AAGGAGGGGGGGAGAGCGGGGCAAAGCCGAGTATTTTTGGGGGAGGTAAG
CCGCATGATGAGGTGGCATTCGAGAAAAAATGGCAGGAGAAGCACAAGGA
TGATCCGAAGCCCGTGTTGTCGGCGGGGGAGGAGGACACCGGGGAGGGAG
AGCGAGGGCCCAGTGGGAATAGGTACAGCAAGCGGGGCGATAGGACATCG
AGGCCGCCGGGATGGGAGGAAGGTGCAACGGGAGCAAGAGCGCTCACGGG
AGGATCGACGCGGATGAGGAGTGGAAGTTGGGGGAGTGGCAGGAAGGAGG
GGGCGGAGGGAGGGCGAGGAGGAGCTGGAGGACGGGGGGCAGCTGGATCT
GGGCGTGGGCCAACCCCGAATAAAAAGCCGACGGTGAAGAAGGCGGCTAT
AGGAGCGGAGGAATGGAAGGAGGTGGAGCATGTGACGGCGAAGAAGAGGG
TTGAGGGACGGTCGCACAGGGGAGGAGGGGAGGGAGGGGAAGAGGAGGAT
AAGATGACAAGGGCGGTGGGGGGCGCGTTCGCGGCGTTGAACATGGATGA
GGATAGTGACAGGGACTAAGGGATGATTGAGCAGTTGAATGGGAGGGTAT
CCTGATTCCGGCGTCGGCTGGTTTTAGACGGGAA
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protein sequence of NO03G03950.1

>NO03G03950.1-protein ID=NO03G03950.1-protein|Name=NO03G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MYSPKPSHSTLTTERVLRHKFVYEPPTHSTAATMSRFDMDDDSDEDSSGG
LSSQLPTEPPFLAYMHDTEAGEQDIRDFFGSELEVISVTVAKNEAKVEFK
DRDTLARSLFYGGRLLKGREAKIALSAGDAPPPHLTPPPPPPPPPAPVAE
NISSFSAQNGNDGGGRGAGAGRGRGGGGRWSSGRESRDAEGRREGGRVGR
SGPRSSIFGRDSAPRRPPLSAKHEDGEGGEKEGEAAEGGEKKERPRLQLK
PRSKPLGEGGGESGAKPSIFGGGKPHDEVAFEKKWQEKHKDDPKPVLSAG
EEDTGEGERGPSGNRYSKRGDRTSRPPGWEEGATGARALTGGSTRMRSGS
WGSGRKEGAEGGRGGAGGRGAAGSGRGPTPNKKPTVKKAAIGAEEWKEVE
HVTAKKRVEGRSHRGGGEGGEEEDKMTRAVGGAFAALNMDEDSDRD*
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mRNA from alignment at chr3:1154500..1156083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03950.1 ID=NO03G03950.1|Name=NO03G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp|location=Sequence derived from alignment at chr3:1154500..1156083- (Nannochloropsis oceanica)
AAAATCATACCCGGCATCGGCAACGGCATCAGGTTAAAGGTCAAGCAGAC AGCCCATCTACACACTTGGGGCAGCAACGCAGCACCATGAGCCCTTGGTC CGGCACATTTCTTGCACCCTTCAACAATGGACATGCGTCTGGAACCTTAG TCTTGTCGCTTTGATCTGGTTACGACAAATGTACTCACCTAAGCCTTCCC ACTCCACTCTCACCACCGAAAGAGTACTTCGCCACAAGTTTGTGTACGAA CCACCCACGCATTCAACAGCAGCTACCATGTCCCGCTTCGACATGGACGA TGACTCAGATGAAGACTCTTCGGGCGGCCTGAGCAGCCAGCTCCCGACAG AACCTCCCTTTCTTGCGTACATGCATGACACCGAGGCAGGCGAACAAGAC ATCCGGGACTTCTTCGGCTCCGAGCTCGAGGTCATCTCCGTGACGGTGGC CAAGAACGAAGCAAAAGTCGAATTCAAGGACCGCGATACTTTGGCCCGCT CCTTGTTTTACGGGGGGAGATTGCTGAAGGGACGCGAGGCAAAGATTGCC CTTTCGGCTGGAGATGCCCCTCCTCCCCACCTTACTCCGCCGCCTCCTCC TCCGCCTCCTCCCGCGCCTGTCGCGGAAAACATTTCGTCCTTTTCAGCGC AAAACGGCAACGATGGTGGCGGCCGTGGTGCGGGAGCTGGGCGTGGGAGG GGTGGAGGAGGAAGGTGGTCAAGTGGGAGGGAGAGCAGGGACGCGGAAGG AAGGAGGGAGGGAGGGAGAGTAGGACGCAGTGGACCCCGTAGCAGCATTT TTGGACGGGACAGTGCACCTAGGCGTCCGCCGCTTTCAGCAAAACACGAA GATGGGGAAGGGGGGGAGAAGGAAGGGGAGGCTGCAGAGGGGGGCGAGAA GAAGGAGCGCCCCCGCTTGCAATTGAAGCCACGAAGCAAGCCATTGGGGG AAGGAGGGGGGGAGAGCGGGGCAAAGCCGAGTATTTTTGGGGGAGGTAAG CCGCATGATGAGGTGGCATTCGAGAAAAAATGGCAGGAGAAGCACAAGGA TGATCCGAAGCCCGTGTTGTCGGCGGGGGAGGAGGACACCGGGGAGGGAG AGCGAGGGCCCAGTGGGAATAGGTACAGCAAGCGGGGCGATAGGACATCG AGGCCGCCGGGATGGGAGGAAGGTGCAACGGGAGCAAGAGCGCTCACGGG AGGATCGACGCGGATGAGGAGTGGAAGTTGGGGGAGTGGCAGGAAGGAGG GGGCGGAGGGAGGGCGAGGAGGAGCTGGAGGACGGGGGGCAGCTGGATCT GGGCGTGGGCCAACCCCGAATAAAAAGCCGACGGTGAAGAAGGCGGCTAT AGGAGCGGAGGAATGGAAGGAGGTGGAGCATGTGACGGCGAAGAAGAGGG TTGAGGGACGGTCGCACAGGGGAGGAGGGGAGGGAGGGGAAGAGGAGGAT AAGATGACAAGGGCGGTGGGGGGCGCGTTCGCGGCGTTGAACATGGATGA GGATAGTGACAGGGACTAAGGGATGATTGAGCAGTTGAATGGGAGGGTAT CCTGATTCCGGCGTCGGCTGGTTTTAGACGGGAA
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Coding sequence (CDS) from alignment at chr3:1154500..1156083-

>NO03G03950.1 ID=NO03G03950.1|Name=NO03G03950.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr3:1154500..1156083- (Nannochloropsis oceanica)
ATGTACTCACCTAAGCCTTCCCACTCCACTCTCACCACCGAAAGAGTACT
TCGCCACAAGTTTGTGTACGAACCACCCACGCATTCAACAGCAGCTACCA
TGTCCCGCTTCGACATGGACGATGACTCAGATGAAGACTCTTCGGGCGGC
CTGAGCAGCCAGCTCCCGACAGAACCTCCCTTTCTTGCGTACATGCATGA
CACCGAGGCAGGCGAACAAGACATCCGGGACTTCTTCGGCTCCGAGCTCG
AGGTCATCTCCGTGACGGTGGCCAAGAACGAAGCAAAAGTCGAATTCAAG
GACCGCGATACTTTGGCCCGCTCCTTGTTTTACGGGGGGAGATTGCTGAA
GGGACGCGAGGCAAAGATTGCCCTTTCGGCTGGAGATGCCCCTCCTCCCC
ACCTTACTCCGCCGCCTCCTCCTCCGCCTCCTCCCGCGCCTGTCGCGGAA
AACATTTCGTCCTTTTCAGCGCAAAACGGCAACGATGGTGGCGGCCGTGG
TGCGGGAGCTGGGCGTGGGAGGGGTGGAGGAGGAAGGTGGTCAAGTGGGA
GGGAGAGCAGGGACGCGGAAGGAAGGAGGGAGGGAGGGAGAGTAGGACGC
AGTGGACCCCGTAGCAGCATTTTTGGACGGGACAGTGCACCTAGGCGTCC
GCCGCTTTCAGCAAAACACGAAGATGGGGAAGGGGGGGAGAAGGAAGGGG
AGGCTGCAGAGGGGGGCGAGAAGAAGGAGCGCCCCCGCTTGCAATTGAAG
CCACGAAGCAAGCCATTGGGGGAAGGAGGGGGGGAGAGCGGGGCAAAGCC
GAGTATTTTTGGGGGAGGTAAGCCGCATGATGAGGTGGCATTCGAGAAAA
AATGGCAGGAGAAGCACAAGGATGATCCGAAGCCCGTGTTGTCGGCGGGG
GAGGAGGACACCGGGGAGGGAGAGCGAGGGCCCAGTGGGAATAGGTACAG
CAAGCGGGGCGATAGGACATCGAGGCCGCCGGGATGGGAGGAAGGTGCAA
CGGGAGCAAGAGCGCTCACGGGAGGATCGACGCGGATGAGGAGTGGAAGT
TGGGGGAGTGGCAGGAAGGAGGGGGCGGAGGGAGGGCGAGGAGGAGCTGG
AGGACGGGGGGCAGCTGGATCTGGGCGTGGGCCAACCCCGAATAAAAAGC
CGACGGTGAAGAAGGCGGCTATAGGAGCGGAGGAATGGAAGGAGGTGGAG
CATGTGACGGCGAAGAAGAGGGTTGAGGGACGGTCGCACAGGGGAGGAGG
GGAGGGAGGGGAAGAGGAGGATAAGATGACAAGGGCGGTGGGGGGCGCGT
TCGCGGCGTTGAACATGGATGAGGATAGTGACAGGGACTAA
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Synonyms
Publications