NO03G03860, NO03G03860 (gene) Nannochloropsis oceanica

Overview
NameNO03G03860
Unique NameNO03G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1689
Alignment locationchr3:1135145..1136833 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1135145..1136833 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G03860 vs. NCBI_GenBank
Match: EWM29825.1 (hypothetical protein Naga_100017g41 [Nannochloropsis gaditana])

HSP 1 Score: 208.0 bits (528), Expect = 7.700e-50
Identity = 118/175 (67.43%), Postives = 135/175 (77.14%), Query Frame = 0 
Query:  287 EGG--DFPPSNDPEGPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLKDGRSGSLELAKELVMEVLTDPNSPDALQRLLHRPDLRASIRQLLQSLVYLPYTKLESHRLLKQQITHLLTHNRHTELSLASACHTLLQAPITHQALLPLLTWTLSPSGPVFSFATDLTS 460
            +GG  DF P NDPEGPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSL+DG+SG+ ELAKELVMEVL DPNS  A+Q LL RP+L AS+R L+  L+ LP+TK ESHRLLKQQ+  L+  N  TE SL      LL+   T  A+  LL+W+LSPSGP+    TDLTS
Sbjct:  118 DGGEADFFPPNDPEGPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLRDGQSGTQELAKELVMEVLADPNSAAAVQHLLMRPELAASLRGLVHPLLLLPFTKRESHRLLKQQLDWLMVRNPATEQSLGGLGQLLLRLASTRAAIASLLSWSLSPSGPLPPLVTDLTS 292
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BLAST of NO03G03860 vs. NCBI_GenBank
Match: CBJ28325.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 2.700e-10
Identity = 77/277 (27.80%), Postives = 127/277 (45.85%), Query Frame = 0 
Query:  193 PPGPCDKYNSITSRFLTWQTRRRDCNFAEGNCVFMGRSVTGWCIPEAEAALYE----DVVPRRMLGDDEGD----------EDYYNDLKSRIDEYEAKEEENDDLLNYEGGDFPPSNDPE---GPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLKDGRSGSLELAKELVMEVLTDPNSPDALQRLLHR----PDLRASIRQLLQSLVYLPYTKLESHRLLKQQITHLLTHNRHTELSLASACHTLLQAPITHQALLPLLTWTLSPSG 449
            P  PC ++N++  R +++  R+ DCN AE +CVF+GRSVTG C+P   + L++      VP  +L D +G           +     +   IDE E+ E E+  +  Y       +   E      VE    +  + I+++EG+   V++ +   LA A  + L+  +S +   AK+ +MEV+ +P  P  +  +L      P L   IR L+ + V L YT   S  L    I  LL+     +   A  C  L++   T  A + L+ W +   G
Sbjct:   65 PVNPCAEFNTLKWR-MSYAHRKDDCN-AEDSCVFVGRSVTGACVPRDPSILHKRRSFPNVP-LVLPDSDGSTKKLQAALQRQHTAKVMSETIDELES-EFEHKGVEWYSDTKLAANKFRELMSALDVEESTQELALAILKEEGM-HAVQVFVKSQLANAAAEELRYQKSATEAFAKDFLMEVMREPELPGQMGHMLESVFKDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPLIRWLLSETDWMDAEAAKLCAYLVRLEQTELATIWLVAWAIREPG 336
The following BLAST results are available for this feature:
BLAST of NO03G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29825.17.700e-5067.43hypothetical protein Naga_100017g41 [Nannochlorops... [more]
CBJ28325.12.700e-1027.80expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005512NSK005512Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03860.1NO03G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100017g41gene814Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03860.1NO03G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03860 ID=NO03G03860|Name=NO03G03860|organism=Nannochloropsis oceanica|type=gene|length=1689bp
ATGAGCCGGCGATCGGCTTGGCAAGCCGGGGGGCCAGCAACCGCTGCAGT
TACCGCTGCAGTCTTGGGCTTCTTGGGCAAGCAACATGTTGGGAGGCTGG
ACGCTGCCGGTGTGCCTCATGCACACAAGGATGACACAGATGGGGATGGC
ACCGCAGCCGAGTCTGTACGAAAAGAAAGCGATGACACAAGCCACGCGAG
ACTGCCATTGTTGCCCATGATAAAGCGACAATTTACGCACCGGAGGACTA
CAGGACCCGATAAAGCTGCTGCTGCGGCGGCGGCTGCCTCTTCTGCTGCT
GCGTCCGCGCCTGCGTCAGAAGACGACTTGGAATGGACCCCAGAGGGTGG
GGGCAGCATGCAGTTACATCGACATACGTCGGCCGTACGACGCGGTCTGG
CCGCCGCAGCAGCCGAGAACGACGAGCTGCCGCAGGGGCTGGATCAGAAA
TCCAAGAAGAAGGGGTGGGGAAAACGCTTGGAGGAAGCTGCTCAGGGTGA
AAGCAAGATGGGGAGAGGTACAGACAAAGCAGCGGCAGCACGCATGCTCC
AGCAGTTGCAAGCCTGGGAGACGCGTCCACCGGGGCCGTGCGACAAGTAT
AATTCCATCACTTCTCGTTTCCTAACCTGGCAGACGCGGAGGAGGGATTG
TAATTTCGCGGAGGGCAATTGTGTGTTTATGGGGCGAAGTGTGACGGGGT
GGTGTATACCCGAGGCAGAAGCGGCATTATACGAGGATGTGGTGCCCCGT
CGTATGTTGGGTGATGATGAGGGCGATGAAGACTACTACAACGATCTCAA
AAGCAGGATAGATGAGTATGAGGCCAAGGAGGAGGAGAACGACGACTTGC
TAAATTACGAAGGAGGCGACTTCCCCCCCTCCAACGATCCCGAGGGCCCC
ATGGTTGAAACCGAGCTCTTACAATCCCTCGTCACCATCATTCGCCAAGA
AGGTATCGAGCAGCCCGTCCGTTTACTCATCACCGGCAGCCTCGCGGAAG
CCATGACCGACTCCCTCAAAGACGGTCGATCAGGCTCTCTCGAACTGGCA
AAAGAGCTAGTGATGGAAGTCCTCACAGACCCCAACTCCCCGGACGCTCT
TCAGCGCCTCCTTCATCGGCCCGATCTCCGCGCCTCCATCCGCCAGCTGC
TCCAGTCTCTCGTTTACCTGCCATACACCAAACTCGAATCGCACCGTCTT
CTAAAGCAACAAATCACCCACCTCCTGACCCACAACCGACACACCGAGCT
ATCACTTGCCTCCGCCTGTCACACCCTCCTCCAGGCCCCCATTACGCACC
AAGCCCTCCTCCCCCTCCTCACGTGGACCCTCTCCCCCTCGGGCCCTGTT
TTCTCCTTTGCCACAGACCTCACCTCAGGCACACTCATCCCACTCCTCAT
TCCCGCCACGACCGACGCCCTGAAGGGTGCTGTGCGCTATGCGCTCGAGC
ATGATTACCTCAAGGAGTTGACGAAGGACTCAGTGAAAGACTTATTGTTG
CGGGTAGCCAAGATGCATGCCATCGCAGCAGCGGGAGCTGCCAGTAAGAG
GCAGGAGAAGGAGAGGGAGGAGGAAGGGAAAGAGGGAGGGGAGGAAAGGC
TTGATAGGGGAATGCAGGGGAGGGGAGAGGAGGAAGAGGATCGAAGGGAG
GAGGAAAATGGCGTGTCGGCTTGGGACGGTGAGGCATGA
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protein sequence of NO03G03860.1

>NO03G03860.1-protein ID=NO03G03860.1-protein|Name=NO03G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MSRRSAWQAGGPATAAVTAAVLGFLGKQHVGRLDAAGVPHAHKDDTDGDG
TAAESVRKESDDTSHARLPLLPMIKRQFTHRRTTGPDKAAAAAAAASSAA
ASAPASEDDLEWTPEGGGSMQLHRHTSAVRRGLAAAAAENDELPQGLDQK
SKKKGWGKRLEEAAQGESKMGRGTDKAAAARMLQQLQAWETRPPGPCDKY
NSITSRFLTWQTRRRDCNFAEGNCVFMGRSVTGWCIPEAEAALYEDVVPR
RMLGDDEGDEDYYNDLKSRIDEYEAKEEENDDLLNYEGGDFPPSNDPEGP
MVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLKDGRSGSLELA
KELVMEVLTDPNSPDALQRLLHRPDLRASIRQLLQSLVYLPYTKLESHRL
LKQQITHLLTHNRHTELSLASACHTLLQAPITHQALLPLLTWTLSPSGPV
FSFATDLTSGTLIPLLIPATTDALKGAVRYALEHDYLKELTKDSVKDLLL
RVAKMHAIAAAGAASKRQEKEREEEGKEGGEERLDRGMQGRGEEEEDRRE
EENGVSAWDGEA*
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Synonyms
Publications