NO03G03860.1, NO03G03860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03860.1
Unique NameNO03G03860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1689
Alignment locationchr3:1135145..1136833 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1135145..1136833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G03860.1 vs.
Match: EWM29825.1 (hypothetical protein Naga_100017g41 [Nannochloropsis gaditana])

HSP 1 Score: 273.5 bits (698), Expect = 1.500e-69
Identity = 170/280 (60.71%), Postives = 195/280 (69.64%), Query Frame = 0 
Query:  287 EGG--DFPPSNDPEGPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLKDGRSGSLELAKELVMEVLTDPNSPDALQRLLHRPDLRASIRQLLQSLVYLPYTKLESHRLLKQQITHLLTHNRHTELSLASACHTLLQAPITHQALLPLLTWTLSPSGPVFSFATDLTSGTLIPLLIPATTDALKGAVRYALEHDYLKELTKDSVKDLLLRVAKMHAIAAAGAASKRQE----------KEREEEGKEGGEERLDRGMQGRGEEEEDRREEENG 555
            +GG  DF P NDPEGPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSL+DG+SG+ ELAKELVMEVL DPNS  A+Q LL RP+L AS+R L+  L+ LP+TK ESHRLLKQQ+  L+  N  TE SL      LL+   T  A+  LL+W+LSPSGP+    TDLTS  L+PLL PATT AL GAV  ALE +Y++EL KD++K LLLRVAKMHA AAA AA  R+           K  EEE  EGG      G  GR E+ E     E G
Sbjct:  118 DGGEADFFPPNDPEGPMVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLRDGQSGTQELAKELVMEVLADPNSAAAVQHLLMRPELAASLRGLVHPLLLLPFTKRESHRLLKQQLDWLMVRNPATEQSLGGLGQLLLRLASTRAAIASLLSWSLSPSGPLPPLVTDLTSDRLVPLLAPATTGALTGAVHEALEDEYIRELAKDTMKGLLLRVAKMHAAAAAAAAEARRREDAESREVAVKREEEEEGEGGHGAETEGGGGRAEDPEGEDAGERG 397
The following BLAST results are available for this feature:
BLAST of NO03G03860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29825.11.500e-6960.71hypothetical protein Naga_100017g41 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03860NO03G03860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03860.1NO03G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03860.1.cds1NO03G03860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03860.1 ID=NO03G03860.1|Name=NO03G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
ATGAGCCGGCGATCGGCTTGGCAAGCCGGGGGGCCAGCAACCGCTGCAGT
TACCGCTGCAGTCTTGGGCTTCTTGGGCAAGCAACATGTTGGGAGGCTGG
ACGCTGCCGGTGTGCCTCATGCACACAAGGATGACACAGATGGGGATGGC
ACCGCAGCCGAGTCTGTACGAAAAGAAAGCGATGACACAAGCCACGCGAG
ACTGCCATTGTTGCCCATGATAAAGCGACAATTTACGCACCGGAGGACTA
CAGGACCCGATAAAGCTGCTGCTGCGGCGGCGGCTGCCTCTTCTGCTGCT
GCGTCCGCGCCTGCGTCAGAAGACGACTTGGAATGGACCCCAGAGGGTGG
GGGCAGCATGCAGTTACATCGACATACGTCGGCCGTACGACGCGGTCTGG
CCGCCGCAGCAGCCGAGAACGACGAGCTGCCGCAGGGGCTGGATCAGAAA
TCCAAGAAGAAGGGGTGGGGAAAACGCTTGGAGGAAGCTGCTCAGGGTGA
AAGCAAGATGGGGAGAGGTACAGACAAAGCAGCGGCAGCACGCATGCTCC
AGCAGTTGCAAGCCTGGGAGACGCGTCCACCGGGGCCGTGCGACAAGTAT
AATTCCATCACTTCTCGTTTCCTAACCTGGCAGACGCGGAGGAGGGATTG
TAATTTCGCGGAGGGCAATTGTGTGTTTATGGGGCGAAGTGTGACGGGGT
GGTGTATACCCGAGGCAGAAGCGGCATTATACGAGGATGTGGTGCCCCGT
CGTATGTTGGGTGATGATGAGGGCGATGAAGACTACTACAACGATCTCAA
AAGCAGGATAGATGAGTATGAGGCCAAGGAGGAGGAGAACGACGACTTGC
TAAATTACGAAGGAGGCGACTTCCCCCCCTCCAACGATCCCGAGGGCCCC
ATGGTTGAAACCGAGCTCTTACAATCCCTCGTCACCATCATTCGCCAAGA
AGGTATCGAGCAGCCCGTCCGTTTACTCATCACCGGCAGCCTCGCGGAAG
CCATGACCGACTCCCTCAAAGACGGTCGATCAGGCTCTCTCGAACTGGCA
AAAGAGCTAGTGATGGAAGTCCTCACAGACCCCAACTCCCCGGACGCTCT
TCAGCGCCTCCTTCATCGGCCCGATCTCCGCGCCTCCATCCGCCAGCTGC
TCCAGTCTCTCGTTTACCTGCCATACACCAAACTCGAATCGCACCGTCTT
CTAAAGCAACAAATCACCCACCTCCTGACCCACAACCGACACACCGAGCT
ATCACTTGCCTCCGCCTGTCACACCCTCCTCCAGGCCCCCATTACGCACC
AAGCCCTCCTCCCCCTCCTCACGTGGACCCTCTCCCCCTCGGGCCCTGTT
TTCTCCTTTGCCACAGACCTCACCTCAGGCACACTCATCCCACTCCTCAT
TCCCGCCACGACCGACGCCCTGAAGGGTGCTGTGCGCTATGCGCTCGAGC
ATGATTACCTCAAGGAGTTGACGAAGGACTCAGTGAAAGACTTATTGTTG
CGGGTAGCCAAGATGCATGCCATCGCAGCAGCGGGAGCTGCCAGTAAGAG
GCAGGAGAAGGAGAGGGAGGAGGAAGGGAAAGAGGGAGGGGAGGAAAGGC
TTGATAGGGGAATGCAGGGGAGGGGAGAGGAGGAAGAGGATCGAAGGGAG
GAGGAAAATGGCGTGTCGGCTTGGGACGGTGAGGCATGA
back to top

protein sequence of NO03G03860.1

>NO03G03860.1-protein ID=NO03G03860.1-protein|Name=NO03G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MSRRSAWQAGGPATAAVTAAVLGFLGKQHVGRLDAAGVPHAHKDDTDGDG
TAAESVRKESDDTSHARLPLLPMIKRQFTHRRTTGPDKAAAAAAAASSAA
ASAPASEDDLEWTPEGGGSMQLHRHTSAVRRGLAAAAAENDELPQGLDQK
SKKKGWGKRLEEAAQGESKMGRGTDKAAAARMLQQLQAWETRPPGPCDKY
NSITSRFLTWQTRRRDCNFAEGNCVFMGRSVTGWCIPEAEAALYEDVVPR
RMLGDDEGDEDYYNDLKSRIDEYEAKEEENDDLLNYEGGDFPPSNDPEGP
MVETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLKDGRSGSLELA
KELVMEVLTDPNSPDALQRLLHRPDLRASIRQLLQSLVYLPYTKLESHRL
LKQQITHLLTHNRHTELSLASACHTLLQAPITHQALLPLLTWTLSPSGPV
FSFATDLTSGTLIPLLIPATTDALKGAVRYALEHDYLKELTKDSVKDLLL
RVAKMHAIAAAGAASKRQEKEREEEGKEGGEERLDRGMQGRGEEEEDRRE
EENGVSAWDGEA*
back to top

mRNA from alignment at chr3:1135145..1136833+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03860.1 ID=NO03G03860.1|Name=NO03G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at chr3:1135145..1136833+ (Nannochloropsis oceanica)
ATGAGCCGGCGATCGGCTTGGCAAGCCGGGGGGCCAGCAACCGCTGCAGT
TACCGCTGCAGTCTTGGGCTTCTTGGGCAAGCAACATGTTGGGAGGCTGG
ACGCTGCCGGTGTGCCTCATGCACACAAGGATGACACAGATGGGGATGGC
ACCGCAGCCGAGTCTGTACGAAAAGAAAGCGATGACACAAGCCACGCGAG
ACTGCCATTGTTGCCCATGATAAAGCGACAATTTACGCACCGGAGGACTA
CAGGACCCGATAAAGCTGCTGCTGCGGCGGCGGCTGCCTCTTCTGCTGCT
GCGTCCGCGCCTGCGTCAGAAGACGACTTGGAATGGACCCCAGAGGGTGG
GGGCAGCATGCAGTTACATCGACATACGTCGGCCGTACGACGCGGTCTGG
CCGCCGCAGCAGCCGAGAACGACGAGCTGCCGCAGGGGCTGGATCAGAAA
TCCAAGAAGAAGGGGTGGGGAAAACGCTTGGAGGAAGCTGCTCAGGGTGA
AAGCAAGATGGGGAGAGGTACAGACAAAGCAGCGGCAGCACGCATGCTCC
AGCAGTTGCAAGCCTGGGAGACGCGTCCACCGGGGCCGTGCGACAAGTAT
AATTCCATCACTTCTCGTTTCCTAACCTGGCAGACGCGGAGGAGGGATTG
TAATTTCGCGGAGGGCAATTGTGTGTTTATGGGGCGAAGTGTGACGGGGT
GGTGTATACCCGAGGCAGAAGCGGCATTATACGAGGATGTGGTGCCCCGT
CGTATGTTGGGTGATGATGAGGGCGATGAAGACTACTACAACGATCTCAA
AAGCAGGATAGATGAGTATGAGGCCAAGGAGGAGGAGAACGACGACTTGC
TAAATTACGAAGGAGGCGACTTCCCCCCCTCCAACGATCCCGAGGGCCCC
ATGGTTGAAACCGAGCTCTTACAATCCCTCGTCACCATCATTCGCCAAGA
AGGTATCGAGCAGCCCGTCCGTTTACTCATCACCGGCAGCCTCGCGGAAG
CCATGACCGACTCCCTCAAAGACGGTCGATCAGGCTCTCTCGAACTGGCA
AAAGAGCTAGTGATGGAAGTCCTCACAGACCCCAACTCCCCGGACGCTCT
TCAGCGCCTCCTTCATCGGCCCGATCTCCGCGCCTCCATCCGCCAGCTGC
TCCAGTCTCTCGTTTACCTGCCATACACCAAACTCGAATCGCACCGTCTT
CTAAAGCAACAAATCACCCACCTCCTGACCCACAACCGACACACCGAGCT
ATCACTTGCCTCCGCCTGTCACACCCTCCTCCAGGCCCCCATTACGCACC
AAGCCCTCCTCCCCCTCCTCACGTGGACCCTCTCCCCCTCGGGCCCTGTT
TTCTCCTTTGCCACAGACCTCACCTCAGGCACACTCATCCCACTCCTCAT
TCCCGCCACGACCGACGCCCTGAAGGGTGCTGTGCGCTATGCGCTCGAGC
ATGATTACCTCAAGGAGTTGACGAAGGACTCAGTGAAAGACTTATTGTTG
CGGGTAGCCAAGATGCATGCCATCGCAGCAGCGGGAGCTGCCAGTAAGAG
GCAGGAGAAGGAGAGGGAGGAGGAAGGGAAAGAGGGAGGGGAGGAAAGGC
TTGATAGGGGAATGCAGGGGAGGGGAGAGGAGGAAGAGGATCGAAGGGAG
GAGGAAAATGGCGTGTCGGCTTGGGACGGTGAGGCATGA
back to top

Coding sequence (CDS) from alignment at chr3:1135145..1136833+

>NO03G03860.1 ID=NO03G03860.1|Name=NO03G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr3:1135145..1136833+ (Nannochloropsis oceanica)
ATGAGCCGGCGATCGGCTTGGCAAGCCGGGGGGCCAGCAACCGCTGCAGT
TACCGCTGCAGTCTTGGGCTTCTTGGGCAAGCAACATGTTGGGAGGCTGG
ACGCTGCCGGTGTGCCTCATGCACACAAGGATGACACAGATGGGGATGGC
ACCGCAGCCGAGTCTGTACGAAAAGAAAGCGATGACACAAGCCACGCGAG
ACTGCCATTGTTGCCCATGATAAAGCGACAATTTACGCACCGGAGGACTA
CAGGACCCGATAAAGCTGCTGCTGCGGCGGCGGCTGCCTCTTCTGCTGCT
GCGTCCGCGCCTGCGTCAGAAGACGACTTGGAATGGACCCCAGAGGGTGG
GGGCAGCATGCAGTTACATCGACATACGTCGGCCGTACGACGCGGTCTGG
CCGCCGCAGCAGCCGAGAACGACGAGCTGCCGCAGGGGCTGGATCAGAAA
TCCAAGAAGAAGGGGTGGGGAAAACGCTTGGAGGAAGCTGCTCAGGGTGA
AAGCAAGATGGGGAGAGGTACAGACAAAGCAGCGGCAGCACGCATGCTCC
AGCAGTTGCAAGCCTGGGAGACGCGTCCACCGGGGCCGTGCGACAAGTAT
AATTCCATCACTTCTCGTTTCCTAACCTGGCAGACGCGGAGGAGGGATTG
TAATTTCGCGGAGGGCAATTGTGTGTTTATGGGGCGAAGTGTGACGGGGT
GGTGTATACCCGAGGCAGAAGCGGCATTATACGAGGATGTGGTGCCCCGT
CGTATGTTGGGTGATGATGAGGGCGATGAAGACTACTACAACGATCTCAA
AAGCAGGATAGATGAGTATGAGGCCAAGGAGGAGGAGAACGACGACTTGC
TAAATTACGAAGGAGGCGACTTCCCCCCCTCCAACGATCCCGAGGGCCCC
ATGGTTGAAACCGAGCTCTTACAATCCCTCGTCACCATCATTCGCCAAGA
AGGTATCGAGCAGCCCGTCCGTTTACTCATCACCGGCAGCCTCGCGGAAG
CCATGACCGACTCCCTCAAAGACGGTCGATCAGGCTCTCTCGAACTGGCA
AAAGAGCTAGTGATGGAAGTCCTCACAGACCCCAACTCCCCGGACGCTCT
TCAGCGCCTCCTTCATCGGCCCGATCTCCGCGCCTCCATCCGCCAGCTGC
TCCAGTCTCTCGTTTACCTGCCATACACCAAACTCGAATCGCACCGTCTT
CTAAAGCAACAAATCACCCACCTCCTGACCCACAACCGACACACCGAGCT
ATCACTTGCCTCCGCCTGTCACACCCTCCTCCAGGCCCCCATTACGCACC
AAGCCCTCCTCCCCCTCCTCACGTGGACCCTCTCCCCCTCGGGCCCTGTT
TTCTCCTTTGCCACAGACCTCACCTCAGGCACACTCATCCCACTCCTCAT
TCCCGCCACGACCGACGCCCTGAAGGGTGCTGTGCGCTATGCGCTCGAGC
ATGATTACCTCAAGGAGTTGACGAAGGACTCAGTGAAAGACTTATTGTTG
CGGGTAGCCAAGATGCATGCCATCGCAGCAGCGGGAGCTGCCAGTAAGAG
GCAGGAGAAGGAGAGGGAGGAGGAAGGGAAAGAGGGAGGGGAGGAAAGGC
TTGATAGGGGAATGCAGGGGAGGGGAGAGGAGGAAGAGGATCGAAGGGAG
GAGGAAAATGGCGTGTCGGCTTGGGACGGTGAGGCATGA
back to top
Synonyms
Publications