NO03G03850, NO03G03850 (gene) Nannochloropsis oceanica

Overview
NameNO03G03850
Unique NameNO03G03850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2136
Alignment locationchr3:1132705..1134840 -

Link to JBrowse

Properties
Property NameValue
DescriptionHemimethylated dna binding domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1132705..1134840 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036623Hemimethylated_DNA-bd_sf
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
IPR011722Hemimethylated_DNA-bd_dom
Homology
BLAST of NO03G03850 vs. NCBI_GenBank
Match: EWM29854.1 (hemimethylated dna binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 538.9 bits (1387), Expect = 2.400e-149
Identity = 276/448 (61.61%), Postives = 328/448 (73.21%), Query Frame = 0
Query:    1 MPRPPPMTRSALRAVVLSLYRTCLRWTQLPLVERSKFLAGDHMPPALAALQLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLNRFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHALESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYPLD--LPSSSPTSSSSS---RWSA-SRRFKVSVQRANLVDASRRLKQHLHDLSHKIWQHLEVHFGVLERFSTQEPLGTLLSLLTELKEMDPFFSSSXXXXXXXXXXXXXXXXXXXXXXXXXXLNEVLPGYDALRVLRDLLAFCEDAHSTRKHSNDKTNVHFHIGQVVRHPSLGYRGVISGWEKFPRTGLPSDPPSLQARHPYYRVIVNDLDRDS 443
            M  P     S  R+VVLSLYR CLRWTQ+PLV +SKF+AGDH+P  LAALQL PRLLTNK+GI EAIR LFRA+A+E +A+V+SEK+N+A +GLQYLNRFT  L +AE+RREANR RDG+TFR+GQVVRHKLYNYRA IVGWD+RP IDVS WEGV+ S+LGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENL++CHALESRI+SDV+PQAFE +D +T SF+PTERI WQYP D  +P +SPTS SS+   R S  SR+F+ SVQRA  VDAS+R++     L+ +I Q LE  FG LERF   EP G LLSLL  LKE+D  F  S                          L ++LP Y  L   RDLLA C+D  S R+ + D+  V + +GQ VRH +LGYRGV+ GWE+FP+  LPSD P L A HP+YRVIVND DR S
Sbjct:    1 MMPPXXXXASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPS---------VPSLSLPSTATASPCSSLEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRS 439          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: KOO23364.1 (f-box only protein 21, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 144.1 bits (362), Expect = 1.700e-30
Identity = 82/230 (35.65%), Postives = 127/230 (55.22%), Query Frame = 0
Query:   10 SALRAVVLSLYRTCLRWTQLPLVERSKFLAG-DHMPPALAAL--QLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLNRFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHALESRI-HSDVVPQAFEYYDTTTNSFIPTERIAWQYP 236
            +A R+V LSLYR   R T  P V  S+F     ++P  ++AL  +L P   T++ G++  +R  +R              ++ AF+ L+ L       E    RR    +R G+ ++IG+V+RHK++ +RA+++GWD+RP +DVS+W+GV     G  QPFY  +PD  D +  LGG R + YVAQENL+       RI H  +    F  +D T   F+P+E++A+ YP
Sbjct:    5 AAERSVTLSLYRAMWRSTMAPAVRHSRFTVPLGNLPDNVSALARRLKP---TDQRGLQALLRAAWRDE---------GGTLDGAFQALRALGELHSECEETVKRRVDKADRRGIHYQIGEVLRHKVFGFRAVVIGWDRRPAVDVSSWDGVQNLPSGTEQPFYKMLPDLADCIEHLGGPRDVRYVAQENLERVPLSHRRILHPSLSAAIFPAFDGTHGRFVPSEQLAFAYP 222          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: GAX29340.1 (hypothetical protein FisN_16Hh225 [Fistulifera solaris])

HSP 1 Score: 143.7 bits (361), Expect = 2.200e-30
Identity = 180/747 (24.10%), Postives = 297/747 (39.76%), Query Frame = 0
Query:    1 MPRPPPMTRSALRA-VVLSLYRTCLRWTQL--PLVERSKFL------AGDHMPPAL------------AALQLPPRLL--------------TNKDGIREAIRTLFRANAQEKNAEVLSEK-VNMAFEGLQYLNRFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDK----RPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHALESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYPLDLPSSSPTSSSSSRWSASRRFKVSVQRANLVDASRRLKQHLHDLSHKIWQHLEVHFGVLERFSTQEPLGTLLSL-LTELKEMDPFFSSSXXXXXXXXXXXXXXXXXXXXXXXXXXLNEVLPGYDALRV-LRDLLAFCEDAHSTRKH-SNDKTNVHFHIGQVVRHPSLGYRGVISGWEKFPRTGLPSDPPSLQA---------RHPYYRVIVNDLDRD-SPSTPAPGMVVLPQEMLEATAAEESAVVVSPLIPDNFLFFDPMTK----TFQPNAMLKFKYPDKEEGGVEGGGDGELKDEKAAALIVETVLRVLTQVLIQAKTKLPRQQQFKTDLFI-----MLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWS 686
            MP PPP T     + V  +LYR  L+W +   P +  +++L      A + + P              AA+QL  + L              T+   +R   R LFR NA     E   +K ++ AF+ L+ LN+ T     A   ++   +R GV F +GQVVRH+   +R +IVGW+K     P+  ++  +   + T+      YH + D+ D  H +    K + VA +  +  + L  RI  ++V   F+ ++    +F+P   +A+ YP D  S  P                           R L   + +L+ ++ Q ++     LER   Q+  G L  L LT L                                    + E +     L + +RDL+AF +       H       +HF +G V+RH   GYRGV++GW+  P   + S    +QA           P+Y V+ +    +    TP   M  + QE LE          ++ L  D   F DP  K     F P  +L+FKY  + +  +E                +  +++ + +    A            DL +      L+   +  DA  ++  +  +  A+   ++R  +   +   L  K + A+  F   +  D  + EA NKR T  F+ G Y+EA    +  L  EP H  AL G GLI++++ Q   A K F  ++++ PWS
Sbjct:    1 MPIPPPTTAPTTPSRVARTLYRHLLKWCRATDPALPLTQWLPPIYLRAPEEVEPYHLEMLATTDNNNDAAVQLARQTLPHAQFHKHHLVVPITHSSDLRNFFRVLFRINAYLPVEETYQKKRIDNAFQALKSLNQLTSE-TIAPFAQQRRIDRTGVQFSVGQVVRHREKRWRGVIVGWEKANHSAPLSSLTTKQYSSEPTV-----TYHVLVDAGDA-HQMNRTTKGITVAFQIEQETNPLLQRIRHEMVDDMFDGFE--QGAFVPPPLLAYTYPNDEISHIP--------------------------PRNLPPDIENLAKQMVQGVQDFANELERIMEQQAGGPLDGLHLTAL------------------AAGHVAPTKVELSFVQQVIQESVHPITMLALHVRDLIAFVDQLQDAFTHRQRPHPPIHFRVGNVIRHKIFGYRGVVTGWDDRPVVDV-SRWDGIQALIQQGKDPNEMPFYHVVRHTEHHERGLDTPGAAMRYVCQENLEV------CYEIADLDVD---FEDPAWKREGDEFIPPPLLQFKYKQETDPSIE--------------RCLTQMMQFINEWQTDAVRNTLSSDSVAKDLSVANFMTCLKYCSKLSDASTLQEAIREIRQANKNIDLRWKLAAALDQTLSGKTENALELFKELVKEDPLYGEAWNKRATCEFMLGMYDEAALSSQKVLELEPKHLPALNGLGLIHFQRAQFDMAAKCFSQSIQLDPWS 670          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: XP_005785839.1 (hypothetical protein EMIHUDRAFT_111823 [Emiliania huxleyi CCMP1516] >EOD33410.1 hypothetical protein EMIHUDRAFT_111823 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 141.7 bits (356), Expect = 8.500e-30
Identity = 203/784 (25.89%), Postives = 292/784 (37.24%), Query Frame = 0
Query:   14 AVVLSLYRTCLRWTQLPLVERSKFLA--GDHMPPALAALQLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLNRFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHALESRIHSDVVPQ-------------AFEYYDTTTNSFIPTERIAWQYP-----------LDLPSSSPTSSSSSRWSASRRFKVSVQRANLVDASRRLKQHLHDLSHKI-WQHLEVHFGVLERFSTQEPLG----------TLLSLLTELKEMDPFFSSSXXXXXXXXXXXXXXXXXXXXXXXXXXLNEVL----------PGYDALRVLR--------------------------DLLAFCEDAHSTRKHSNDKTNVHFHIGQ-----------------VVRHPSLGYRGVISGWEKFPRT---------GLPSDPPSLQARHPYYRVIVNDLDRDSPSTPAPGMVVLPQEMLEATAAEESAVVVSPLIPDNFLFFDPMTKTFQPNAMLKFKYPDKEEGGVEGGGDGELKDEKAAALIVETVLRVLTQVLIQAKTKLPRQQQFKTDLFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTA-HFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWSTNVGTTLFHTRK 698
            +V  +LYR+  RW + P V  +   A   D +P ++              G RE +R  +R  A        + +++ AF  L         LE  + +R +N  R  V  RIG+VVRH  Y YR +++GWD++  +DVS W+G+ +S+ G +QPFY  +PD  D    LGG R++ YVAQENL+      +R+H   +               AF  YD T  +F+P++ +A++YP                                            A  R  Q L D    +  Q ++      ER   Q   G                             XXXXXXXXXXXXXXXXXXXX      L+ VL          P   A  + R                             AF E   + R    D+  + F +GQ                 V+RH   G+R  + GWE+ P           GLPS      A  P+YR++ +  D         G+  + QE LE     E A +   L+P  F  +D  + TF P   L++ Y            D       AAA  ++ +  +L    + A     R       L ++L  A    D+   E    +L  AHP   VR LM    + +       A    D AL  DG   E   +R  A HF       A R +E +  RE           L  Y+     +A+ AF A LR+HPW+  V   +F   +
Sbjct:    2 SVAQALYRSMWRWVRSPAVRCNPHFALPLDKLPASVVRAAERLESPRGAAGSRELLRLAWREAASTSGEAATAAELDDAFRVLXXXXXXXXELEALQKKRASNAWRVDVEMRIGEVVRHSQYGYRGVVLGWDRKAEVDVSGWDGLRKSSRGGDQPFYRLLPDYTDCAELLGGPREVKYVAQENLERLPPRYTRVHHPALLSPGASPPVRRDDHGAFLRYDATAAAFVPSDELAYEYPGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTRASQQLRDFVAAVDQQQMQQQAQARERPGYQAEAGYGAEEAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGRRLLSHVLRLADTAAAHEPASRASPLPRPASLQAGGXXXXXXXXXXXXXXXXXXXXAAFVESNAAERAAKADRGGITFGVGQALRSSTSHTTTTVFADHVLRHRKFGFRAAVLGWERRPEVDVSGWDGVQGLPSG-----ADQPFYRMVPDMGDCVGLLGGPRGVRYVAQENLEELPLSERA-ISHELLPHFFDGYDAASGTFLPVQQLRYWY----------SRDPLPDTGLAAAAALDKLSALLHSHALDA-----RGAGLLEPLMLLLGAAGSAADSXXAERAALALLAAHPSGEVRELMRASERSVEGDDLLAARGALDEALDIDGGHAELFARRAAARHF-------AARTLEGSALRE-----------LRRYD-----EAVDAFEAALRLHPWAPGVVPNIFKAER 741          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: GAX09532.1 (hypothetical protein FisN_16Lh225 [Fistulifera solaris])

HSP 1 Score: 140.2 bits (352), Expect = 2.500e-29
Identity = 176/740 (23.78%), Postives = 298/740 (40.27%), Query Frame = 0
Query:    4 PPPMTRSALRA-VVLSLYRTCLRWTQL--PLVERSKFL------AGDHMPPAL------------AALQLPPRLL--------------TNKDGIREAIRTLFRANAQ-EKNAEVLSEKVNMAFEGLQYLNRFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDK---RPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVA--QENLKMCHALESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYPLDLPSSSPTSSSSSRWSASRRFKVSVQRANLVDASRRLKQHLHDLSHKIWQHLEVHFGVLERFSTQEPLGTLLSL-LTELKEMDPFFSSSXXXXXXXXXXXXXXXXXXXXXXXXXXLNEVLPGYDALRVLRDLLAFCEDAHSTRKHS-NDKTNVHFHIGQVVRHPSLGYRGVISGWEKFPRTGLPSDPPSLQA---------RHPYYRVIVNDLDRD-SPSTPAPGMVVLPQEMLEATAAEESAVVVSPLIPDNFLFFDPMTK----TFQPNAMLKFKYPDKEEGGVEGGGDGELKDEKAAALIVETVLRVLTQVLIQAKTKLPRQQQFKTDLFI-MLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWS 686
            PPP T  A  + V  +LYR  L+W +   P +  +++L      A + + P              AA+QL  + L               +   +R   R LFR NA          ++++ AF+ L+ LN+ T     A   ++   +R GV F +GQVVRH+   +R ++VGW+K    P+  ++  +   +ST+      YH + D+ D  H +    K + VA   E  +  + +  RI  ++V   F+ +D    +F+P   +A+ YP D                    ++  +R      S  L + + DL+ ++ Q ++     LER   Q+  G L  L LT L                                       V P       +RDL+AF +       H       +HF +G V+RH   GYRGV++GW+  P   + S    +QA           P+Y V+ +    +    TP   M  + QE LE          V+ L  D   F DP  K     F P  +L+FKY  + +  +          E+    +++ +    +  +    +     +      F+  L+   +  DA  ++  +  +  A+P  ++R  +   +   L  K + A+  F A +  D  ++EA NKR T  F+ G Y+EA       L  EP H  AL G GLI++++ +   A + F  ++++ PWS
Sbjct:    4 PPPTTAPATPSRVARTLYRHLLKWCRATDPALPLTQWLPPIYLRAPEEVEPYHLEMLATTDNSNDAAVQLARQTLPHAQFHKHHLVVPIMHSGDLRNFFRALFRINAYLPVEGSYQKKRIDNAFQALKSLNQLTSE-TIAPFAQQRRIDRTGVQFSVGQVVRHREKRWRGVVVGWEKANSAPLSSLTTKQYSSESTV-----TYHVLVDAGDA-HQMNRTTKGITVAFQHEIERETNLMLQRIRHEMVDDMFDGFD--QGAFVPPPLLAYTYPND--------------------EIPHRR------SHSLPRDIEDLAKQMVQSVQDFANELERIIEQQAGGPLDGLHLTAL-----------------AAGHVAPTKIELSFVQQVIQESVHPITMVALHVRDLIAFVDQLQDAFTHRLRQHPPIHFRVGDVIRHKVFGYRGVVTGWDDRPVVDV-SRWDGIQALIQQGKDPNEMPFYHVVRHTEHHERGLDTPGAAMRYVCQENLEV------CYEVADLDVD---FEDPAWKREGDEFIPPPLLQFKYGQETDPSI----------ERCLTQMMQLINEWQSDAVRNTVSPDSVAKNLSVSNFMTCLKYCSKLSDASTLQEAIREIRQANPNIDLRWKLAAALDQTLSGKTEKALELFKALVKEDPLYVEAWNKRATCEFMLGMYDEAALSSHKVLELEPKHLPALNGLGLIHFQRTRFDMAAECFSQSIQLDPWS 671          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: PSC71606.1 (F-box only 21 [Micractinium conductrix])

HSP 1 Score: 113.2 bits (282), Expect = 3.300e-21
Identity = 76/236 (32.20%), Postives = 112/236 (47.46%), Query Frame = 0
Query:    8 TRSALRAVVLSLYRTCLRWT----QLPLVERSKFLAGDHMPPAL---AALQLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLN-RFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHALESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYP 236
            T    R   L+LYR  LRW+     +P   R+  +    + PA+   +A  L P  L +   +    R  FR  A+   AE     V+  FE +Q LN  +   L+     R    +R GV F +GQV  HK + YRA++ GWD+    D +  + +  ST    QPFYHC+PD +D +   GGVR   YVAQEN++       RI    +   F  Y      +IP+ ++ ++YP
Sbjct:    3 TPGGSRRTALALYRCILRWSAQNADVPFSVRASDIRA--LAPAVLDSSAGALSPAALQDAGAVAAVARAAFREAARASGAEA-EATVDRGFEAVQVLNGTYARQLQAMRELRADRADRSGVKFGVGQVFVHKKFGYRAVVFGWDRACERDDAWLQAMSVST--AQQPFYHCLPDESDAIRLFGGVRITKYVAQENMEPLEG--GRIVHRALDSFFVGYSPALGRYIPSRKLQYEYP 231          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: PIO48593.1 (hypothetical protein CMR00_03700 [Chlorobium sp. 445])

HSP 1 Score: 109.0 bits (271), Expect = 6.100e-20
Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 0
Query:  539 KTKLPRQQQFKTDLFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWSTNVGTTLFHTRKQL 700
            K  L  ++     LF  L+ A  ++ A  +E+ +W LW     E++  LM  G++ M    Y  A+  F A    D +F E  NKR TA++L G +  + +D+E TL+ EP H+GAL G GLIY   G ++ A+KA+ A L+IHP   ++   + + R++L
Sbjct:   20 KITLEEKKAMLDSLFAQLKTAESEDAAAFIENLIWELWTTSEREDINVLMAKGIEEMSENNYTRAIQAFSAITELDPDFPEGWNKRATAYYLKGDFAASMKDIERTLALEPRHFGALSGLGLIYMAIGNELAALKAYEAVLQIHPQQRDLRKYVENLRRKL 180          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: WP_094302937.1 (tetratricopeptide repeat protein [Azospirillum brasilense] >OYD84619.1 hypothetical protein CHT98_09170 [Azospirillum brasilense])

HSP 1 Score: 106.3 bits (264), Expect = 4.000e-19
Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 0
Query:  552 LFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWSTNVGTTLFHTRKQLEG 702
            LF  LQ A     AE VE  +W +WL HP +++  LM  GVQ +   +Y  A+A FD  +AAD  + E  NKR  A ++ G Y+ A RD+   L+ EP H+GAL G GL+Y    Q   A++AF A L I+P    V     + R ++ G
Sbjct:   38 LFQDLQTAGDAVAAEAVEDRIWDVWLEHPNDDLIVLMHHGVQSLNADRYGEALAAFDQVVAADPTYAEGWNKRANAEYMLGDYDAAVRDIRRVLALEPRHFGALAGLGLVYLAIDQPAGALRAFDAALAINPHLDRVRQQAANIRLRMAG 187          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: WP_014240900.1 (tetratricopeptide repeat protein [Azospirillum brasilense] >CCC98691.1 tetratricopeptide TPR_2 [Azospirillum brasilense Sp245])

HSP 1 Score: 104.8 bits (260), Expect = 1.200e-18
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 0
Query:  552 LFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHP 684
            LF  LQ A     AE VE  +W +WL HP +++  LM  GVQ +   +Y  A+A FD  +AAD  + E  NKR  A ++ G Y+ A RD+   L+ EP H+GAL G GL+Y    Q   A++AF A L I+P
Sbjct:   38 LFQDLQTAGDAVAAEAVEDRIWDVWLEHPNDDLIVLMHHGVQSLNADRYGEALAAFDQVVAADPTYAEGWNKRANAEYMLGDYDAAVRDIRRVLALEPRHFGALAGLGLVYLAIDQPAGALRAFDAALAINP 169          
BLAST of NO03G03850 vs. NCBI_GenBank
Match: WP_038526997.1 (tetratricopeptide repeat protein [Azospirillum brasilense] >EZQ08184.1 hypothetical protein ABAZ39_05715 [Azospirillum brasilense] >AIB11246.1 hypothetical protein ABAZ39_04290 [Azospirillum brasilense] >PNQ98416.1 tetratricopeptide repeat protein [Azospirillum brasilense])

HSP 1 Score: 104.8 bits (260), Expect = 1.200e-18
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 0
Query:  552 LFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGALLGKGLIYYEQGQKVQAIKAFRATLRIHP 684
            LF  LQ A     AE VE  +W +WL HP +++  LM  GVQ +   +Y  A+A FD  +AAD  + E  NKR  A ++ G Y+ A RD+   L+ EP H+GAL G GL+Y    Q   A++AF A L I+P
Sbjct:   38 LFQDLQTAGDAVAAEAVEDRIWDVWLEHPNDDLIVLMHHGVQSLNADRYGEALAAFDQVVAADPTYAEGWNKRANAEYMLGDYDAAVRDIRRVLALEPRHFGALAGLGLVYLAIDQPAGALRAFDAALAINP 169          
The following BLAST results are available for this feature:
BLAST of NO03G03850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29854.12.400e-14961.61hemimethylated dna binding domain-containing prote... [more]
KOO23364.11.700e-3035.65f-box only protein 21, partial [Chrysochromulina s... [more]
GAX29340.12.200e-3024.10hypothetical protein FisN_16Hh225 [Fistulifera sol... [more]
XP_005785839.18.500e-3025.89hypothetical protein EMIHUDRAFT_111823 [Emiliania ... [more]
GAX09532.12.500e-2923.78hypothetical protein FisN_16Lh225 [Fistulifera sol... [more]
PSC71606.13.300e-2132.20F-box only 21 [Micractinium conductrix][more]
PIO48593.16.100e-2034.78hypothetical protein CMR00_03700 [Chlorobium sp. 4... [more]
WP_094302937.14.000e-1939.33tetratricopeptide repeat protein [Azospirillum bra... [more]
WP_014240900.11.200e-1842.42tetratricopeptide repeat protein [Azospirillum bra... [more]
WP_038526997.11.200e-1842.42tetratricopeptide repeat protein [Azospirillum bra... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005513NSK005513Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03850.1NO03G03850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572783gene_1583Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g42gene815Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03850.1NO03G03850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03850 ID=NO03G03850|Name=NO03G03850|organism=Nannochloropsis oceanica|type=gene|length=2136bp
ATGCCCCGCCCACCACCAATGACCCGCAGCGCCTTGCGCGCCGTAGTCCT
GTCCTTGTACCGCACATGCTTGCGATGGACTCAACTCCCTCTCGTTGAGC
GTAGCAAATTCTTGGCGGGTGACCACATGCCTCCCGCTCTCGCTGCCCTC
CAGCTTCCACCCCGCCTCCTAACAAACAAGGACGGCATACGAGAAGCCAT
ACGCACGCTCTTTCGAGCCAATGCCCAGGAAAAAAATGCCGAGGTGTTAT
CGGAGAAGGTAAATATGGCATTCGAGGGCCTACAATACCTCAATCGCTTT
ACTGGTACCTTGGAAAATGCGGAGGCCCGCCGAGAAGCAAATCGGAATAG
AGACGGAGTCACATTTCGGATAGGGCAGGTGGTACGGCACAAACTGTACA
ATTACCGAGCAATTATTGTGGGGTGGGATAAGCGGCCGATGATTGATGTG
AGCAATTGGGAAGGAGTCGTGCAGTCAACGCTGGGAGTGAATCAACCTTT
TTATCACTGCATACCCGACAGCAACGATACACTGCATTTCCTCGGTGGTG
TCCGCAAGCTCATGTACGTCGCACAAGAGAATCTTAAAATGTGCCACGCG
CTCGAAAGTAGGATTCACTCCGATGTGGTCCCCCAAGCCTTCGAATATTA
CGACACTACCACCAACTCATTTATCCCAACTGAGAGGATTGCATGGCAGT
ACCCGCTTGATCTCCCTTCCTCCTCCCCGACCTCGTCCTCTTCCTCCCGA
TGGTCAGCCAGTCGCAGGTTTAAAGTATCCGTCCAAAGGGCCAACCTCGT
TGATGCCTCCCGCCGCCTCAAACAGCATCTACACGATCTCTCCCACAAAA
TATGGCAGCATCTCGAGGTCCACTTTGGAGTTCTCGAGCGCTTTTCAACC
CAAGAACCCTTGGGGACTTTGCTTTCGTTGCTCACCGAATTGAAAGAGAT
GGATCCTTTCTTTTCTTCCTCGCTGTCCTCCTCTTCTTCAAAAGCCAGCA
TCACCAGCAGCACCAGCACCAGTACCAGCACCGGCACCTGCACAGACAAT
TTGAATGAGGTCTTGCCCGGCTATGATGCTCTACGAGTTCTCCGCGACCT
CCTCGCCTTCTGCGAGGACGCACATTCTACTCGCAAGCACTCCAACGACA
AAACAAACGTTCACTTTCACATCGGTCAAGTTGTCCGTCATCCCTCCCTG
GGCTATCGCGGCGTTATCAGCGGCTGGGAAAAATTCCCTCGAACAGGCCT
TCCTTCTGACCCCCCTTCTTTACAAGCACGCCATCCATATTACCGTGTCA
TTGTCAATGATCTCGATCGTGACTCGCCCTCCACCCCAGCTCCGGGTATG
GTGGTTCTGCCGCAAGAAATGCTCGAGGCGACCGCAGCGGAGGAGAGTGC
TGTGGTTGTAAGTCCTTTGATTCCTGACAACTTTCTGTTTTTTGATCCTA
TGACCAAAACATTTCAGCCTAATGCCATGTTGAAATTCAAATACCCGGAC
AAGGAGGAGGGTGGGGTAGAGGGAGGGGGGGATGGAGAGTTGAAGGACGA
GAAAGCAGCAGCATTGATTGTGGAGACGGTATTGCGAGTCCTCACACAGG
TGTTGATTCAAGCAAAAACTAAGCTGCCGAGACAACAGCAGTTCAAAACT
GATTTGTTTATTATGTTGCAGGGGGCAATGCGGAAGGAGGACGCAGAGGT
AGTGGAGAGTTGTTTGTGGTCTCTATGGTTGGCGCATCCGGAGGAAAACG
TGCGGAGGTTGATGGACGATGGGGTACAATTCATGTTGCGGGCAAAATAT
GACTTGGCTGTTGCTCGATTCGACGCTGCATTAGCGGCGGATGGGGAGTT
TATTGAGGCAAGTAATAAGCGGGGTACGGCCCATTTTTTGGCGGGGAGGT
ATGAGGAGGCCCGAAGGGATGTGGAGGCGACTTTGAGTCGGGAGCCGTTA
CACTGGGGGGCGTTGTTGGGGAAGGGCCTGATTTATTATGAACAGGGCCA
GAAGGTCCAGGCGATTAAGGCATTCAGGGCTACCCTGAGGATTCACCCCT
GGAGCACAAACGTGGGGACGACATTGTTCCATACCCGGAAGCAGTTGGAG
GGGGAGGAGGCGGGAACGATGGCGGAGCATCCTTGA
back to top

protein sequence of NO03G03850.1

>NO03G03850.1-protein ID=NO03G03850.1-protein|Name=NO03G03850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MPRPPPMTRSALRAVVLSLYRTCLRWTQLPLVERSKFLAGDHMPPALAAL
QLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLNRF
TGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDV
SNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHA
LESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYPLDLPSSSPTSSSSSR
WSASRRFKVSVQRANLVDASRRLKQHLHDLSHKIWQHLEVHFGVLERFST
QEPLGTLLSLLTELKEMDPFFSSSLSSSSSKASITSSTSTSTSTGTCTDN
LNEVLPGYDALRVLRDLLAFCEDAHSTRKHSNDKTNVHFHIGQVVRHPSL
GYRGVISGWEKFPRTGLPSDPPSLQARHPYYRVIVNDLDRDSPSTPAPGM
VVLPQEMLEATAAEESAVVVSPLIPDNFLFFDPMTKTFQPNAMLKFKYPD
KEEGGVEGGGDGELKDEKAAALIVETVLRVLTQVLIQAKTKLPRQQQFKT
DLFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKY
DLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPL
HWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWSTNVGTTLFHTRKQLE
GEEAGTMAEHP*
back to top
Synonyms
Publications