NO03G03850.1, NO03G03850.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03850.1
Unique Name	NO03G03850.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2136
Alignment location	chr3:1132705..1134840 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1132705..1134840 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G03850.1 vs.
Match: EWM29854.1 (hemimethylated dna binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 550.1 bits (1416), Expect = 1.000e-152
Identity = 283/448 (63.17%), Postives = 341/448 (76.12%), Query Frame = 0

Query:    1 MPRPPPMTRSALRAVVLSLYRTCLRWTQLPLVERSKFLAGDHMPPALAALQLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLNRFTGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDVSNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHALESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYPLD--LPSSSPTSSSSS---RWSA-SRRFKVSVQRANLVDASRRLKQHLHDLSHKIWQHLEVHFGVLERFSTQEPLGTLLSLLTELKEMDPFFSSSLSSSSSKASITSSTSTSTSTGTCTDNLNEVLPGYDALRVLRDLLAFCEDAHSTRKHSNDKTNVHFHIGQVVRHPSLGYRGVISGWEKFPRTGLPSDPPSLQARHPYYRVIVNDLDRDS 443
            M  PPP + S  R+VVLSLYR CLRWTQ+PLV +SKF+AGDH+P  LAALQL PRLLTNK+GI EAIR LFRA+A+E +A+V+SEK+N+A +GLQYLNRFT  L +AE+RREANR RDG+TFR+GQVVRHKLYNYRA IVGWD+RP IDVS WEGV+ S+LGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENL++CHALESRI+SDV+PQAFE +D +T SF+PTERI WQYP D  +P +SPTS SS+   R S  SR+F+ SVQRA  VDAS+R++     L+ +I Q LE  FG LERF   EP G LLSLL  LKE+D  F  S+ S S  ++ T+S  +S         L ++LP Y  L   RDLLA C+D  S R+ + D+  V + +GQ VRH +LGYRGV+ GWE+FP+  LPSD P L A HP+YRVIVND DR S
Sbjct:    1 MMPPPPSSASTSRSVVLSLYRACLRWTQIPLVVKSKFIAGDHLPSTLAALQLSPRLLTNKEGIEEAIRMLFRAHAKEMDAKVVSEKMNLAVDGLQYLNRFTRVLRDAESRREANRARDGLTFRVGQVVRHKLYNYRAAIVGWDRRPAIDVSRWEGVLASSLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLELCHALESRINSDVIPQAFECFDPSTQSFLPTERITWQYPADHLVPRASPTSPSSTFKPRTSGFSRKFRASVQRAKAVDASQRVRAEFAQLADRIGQSLESRFGNLERFHAHEPAGILLSLLARLKEIDASFPPSVPSLSLPSTATASPCSS---------LEQILPAYHTLAAFRDLLALCQDVSSARRFARDRDGVLYQVGQAVRHATLGYRGVVCGWERFPKRQLPSDQPDLSAGHPHYRVIVNDEDRRS 439

The following BLAST results are available for this feature:

BLAST of NO03G03850.1 vs.

BLAST of NO03G03850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29854.1	1.000e-152	63.17	hemimethylated dna binding domain-containing prote...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G03850	NO03G03850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03850.1	NO03G03850.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03850.1.cds1	NO03G03850.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1132705..1134840-
coding sequence from alignment at chr3:1132705..1134840-

mRNA sequence

>NO03G03850.1 ID=NO03G03850.1|Name=NO03G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
ATGCCCCGCCCACCACCAATGACCCGCAGCGCCTTGCGCGCCGTAGTCCT
GTCCTTGTACCGCACATGCTTGCGATGGACTCAACTCCCTCTCGTTGAGC
GTAGCAAATTCTTGGCGGGTGACCACATGCCTCCCGCTCTCGCTGCCCTC
CAGCTTCCACCCCGCCTCCTAACAAACAAGGACGGCATACGAGAAGCCAT
ACGCACGCTCTTTCGAGCCAATGCCCAGGAAAAAAATGCCGAGGTGTTAT
CGGAGAAGGTAAATATGGCATTCGAGGGCCTACAATACCTCAATCGCTTT
ACTGGTACCTTGGAAAATGCGGAGGCCCGCCGAGAAGCAAATCGGAATAG
AGACGGAGTCACATTTCGGATAGGGCAGGTGGTACGGCACAAACTGTACA
ATTACCGAGCAATTATTGTGGGGTGGGATAAGCGGCCGATGATTGATGTG
AGCAATTGGGAAGGAGTCGTGCAGTCAACGCTGGGAGTGAATCAACCTTT
TTATCACTGCATACCCGACAGCAACGATACACTGCATTTCCTCGGTGGTG
TCCGCAAGCTCATGTACGTCGCACAAGAGAATCTTAAAATGTGCCACGCG
CTCGAAAGTAGGATTCACTCCGATGTGGTCCCCCAAGCCTTCGAATATTA
CGACACTACCACCAACTCATTTATCCCAACTGAGAGGATTGCATGGCAGT
ACCCGCTTGATCTCCCTTCCTCCTCCCCGACCTCGTCCTCTTCCTCCCGA
TGGTCAGCCAGTCGCAGGTTTAAAGTATCCGTCCAAAGGGCCAACCTCGT
TGATGCCTCCCGCCGCCTCAAACAGCATCTACACGATCTCTCCCACAAAA
TATGGCAGCATCTCGAGGTCCACTTTGGAGTTCTCGAGCGCTTTTCAACC
CAAGAACCCTTGGGGACTTTGCTTTCGTTGCTCACCGAATTGAAAGAGAT
GGATCCTTTCTTTTCTTCCTCGCTGTCCTCCTCTTCTTCAAAAGCCAGCA
TCACCAGCAGCACCAGCACCAGTACCAGCACCGGCACCTGCACAGACAAT
TTGAATGAGGTCTTGCCCGGCTATGATGCTCTACGAGTTCTCCGCGACCT
CCTCGCCTTCTGCGAGGACGCACATTCTACTCGCAAGCACTCCAACGACA
AAACAAACGTTCACTTTCACATCGGTCAAGTTGTCCGTCATCCCTCCCTG
GGCTATCGCGGCGTTATCAGCGGCTGGGAAAAATTCCCTCGAACAGGCCT
TCCTTCTGACCCCCCTTCTTTACAAGCACGCCATCCATATTACCGTGTCA
TTGTCAATGATCTCGATCGTGACTCGCCCTCCACCCCAGCTCCGGGTATG
GTGGTTCTGCCGCAAGAAATGCTCGAGGCGACCGCAGCGGAGGAGAGTGC
TGTGGTTGTAAGTCCTTTGATTCCTGACAACTTTCTGTTTTTTGATCCTA
TGACCAAAACATTTCAGCCTAATGCCATGTTGAAATTCAAATACCCGGAC
AAGGAGGAGGGTGGGGTAGAGGGAGGGGGGGATGGAGAGTTGAAGGACGA
GAAAGCAGCAGCATTGATTGTGGAGACGGTATTGCGAGTCCTCACACAGG
TGTTGATTCAAGCAAAAACTAAGCTGCCGAGACAACAGCAGTTCAAAACT
GATTTGTTTATTATGTTGCAGGGGGCAATGCGGAAGGAGGACGCAGAGGT
AGTGGAGAGTTGTTTGTGGTCTCTATGGTTGGCGCATCCGGAGGAAAACG
TGCGGAGGTTGATGGACGATGGGGTACAATTCATGTTGCGGGCAAAATAT
GACTTGGCTGTTGCTCGATTCGACGCTGCATTAGCGGCGGATGGGGAGTT
TATTGAGGCAAGTAATAAGCGGGGTACGGCCCATTTTTTGGCGGGGAGGT
ATGAGGAGGCCCGAAGGGATGTGGAGGCGACTTTGAGTCGGGAGCCGTTA
CACTGGGGGGCGTTGTTGGGGAAGGGCCTGATTTATTATGAACAGGGCCA
GAAGGTCCAGGCGATTAAGGCATTCAGGGCTACCCTGAGGATTCACCCCT
GGAGCACAAACGTGGGGACGACATTGTTCCATACCCGGAAGCAGTTGGAG
GGGGAGGAGGCGGGAACGATGGCGGAGCATCCTTGA

protein sequence of NO03G03850.1

>NO03G03850.1-protein ID=NO03G03850.1-protein|Name=NO03G03850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MPRPPPMTRSALRAVVLSLYRTCLRWTQLPLVERSKFLAGDHMPPALAAL
QLPPRLLTNKDGIREAIRTLFRANAQEKNAEVLSEKVNMAFEGLQYLNRF
TGTLENAEARREANRNRDGVTFRIGQVVRHKLYNYRAIIVGWDKRPMIDV
SNWEGVVQSTLGVNQPFYHCIPDSNDTLHFLGGVRKLMYVAQENLKMCHA
LESRIHSDVVPQAFEYYDTTTNSFIPTERIAWQYPLDLPSSSPTSSSSSR
WSASRRFKVSVQRANLVDASRRLKQHLHDLSHKIWQHLEVHFGVLERFST
QEPLGTLLSLLTELKEMDPFFSSSLSSSSSKASITSSTSTSTSTGTCTDN
LNEVLPGYDALRVLRDLLAFCEDAHSTRKHSNDKTNVHFHIGQVVRHPSL
GYRGVISGWEKFPRTGLPSDPPSLQARHPYYRVIVNDLDRDSPSTPAPGM
VVLPQEMLEATAAEESAVVVSPLIPDNFLFFDPMTKTFQPNAMLKFKYPD
KEEGGVEGGGDGELKDEKAAALIVETVLRVLTQVLIQAKTKLPRQQQFKT
DLFIMLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKY
DLAVARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPL
HWGALLGKGLIYYEQGQKVQAIKAFRATLRIHPWSTNVGTTLFHTRKQLE
GEEAGTMAEHP*

mRNA from alignment at chr3:1132705..1134840-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G03850.1 ID=NO03G03850.1|Name=NO03G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at chr3:1132705..1134840- (Nannochloropsis oceanica)
ATGCCCCGCCCACCACCAATGACCCGCAGCGCCTTGCGCGCCGTAGTCCT
GTCCTTGTACCGCACATGCTTGCGATGGACTCAACTCCCTCTCGTTGAGC
GTAGCAAATTCTTGGCGGGTGACCACATGCCTCCCGCTCTCGCTGCCCTC
CAGCTTCCACCCCGCCTCCTAACAAACAAGGACGGCATACGAGAAGCCAT
ACGCACGCTCTTTCGAGCCAATGCCCAGGAAAAAAATGCCGAGGTGTTAT
CGGAGAAGGTAAATATGGCATTCGAGGGCCTACAATACCTCAATCGCTTT
ACTGGTACCTTGGAAAATGCGGAGGCCCGCCGAGAAGCAAATCGGAATAG
AGACGGAGTCACATTTCGGATAGGGCAGGTGGTACGGCACAAACTGTACA
ATTACCGAGCAATTATTGTGGGGTGGGATAAGCGGCCGATGATTGATGTG
AGCAATTGGGAAGGAGTCGTGCAGTCAACGCTGGGAGTGAATCAACCTTT
TTATCACTGCATACCCGACAGCAACGATACACTGCATTTCCTCGGTGGTG
TCCGCAAGCTCATGTACGTCGCACAAGAGAATCTTAAAATGTGCCACGCG
CTCGAAAGTAGGATTCACTCCGATGTGGTCCCCCAAGCCTTCGAATATTA
CGACACTACCACCAACTCATTTATCCCAACTGAGAGGATTGCATGGCAGT
ACCCGCTTGATCTCCCTTCCTCCTCCCCGACCTCGTCCTCTTCCTCCCGA
TGGTCAGCCAGTCGCAGGTTTAAAGTATCCGTCCAAAGGGCCAACCTCGT
TGATGCCTCCCGCCGCCTCAAACAGCATCTACACGATCTCTCCCACAAAA
TATGGCAGCATCTCGAGGTCCACTTTGGAGTTCTCGAGCGCTTTTCAACC
CAAGAACCCTTGGGGACTTTGCTTTCGTTGCTCACCGAATTGAAAGAGAT
GGATCCTTTCTTTTCTTCCTCGCTGTCCTCCTCTTCTTCAAAAGCCAGCA
TCACCAGCAGCACCAGCACCAGTACCAGCACCGGCACCTGCACAGACAAT
TTGAATGAGGTCTTGCCCGGCTATGATGCTCTACGAGTTCTCCGCGACCT
CCTCGCCTTCTGCGAGGACGCACATTCTACTCGCAAGCACTCCAACGACA
AAACAAACGTTCACTTTCACATCGGTCAAGTTGTCCGTCATCCCTCCCTG
GGCTATCGCGGCGTTATCAGCGGCTGGGAAAAATTCCCTCGAACAGGCCT
TCCTTCTGACCCCCCTTCTTTACAAGCACGCCATCCATATTACCGTGTCA
TTGTCAATGATCTCGATCGTGACTCGCCCTCCACCCCAGCTCCGGGTATG
GTGGTTCTGCCGCAAGAAATGCTCGAGGCGACCGCAGCGGAGGAGAGTGC
TGTGGTTGTAAGTCCTTTGATTCCTGACAACTTTCTGTTTTTTGATCCTA
TGACCAAAACATTTCAGCCTAATGCCATGTTGAAATTCAAATACCCGGAC
AAGGAGGAGGGTGGGGTAGAGGGAGGGGGGGATGGAGAGTTGAAGGACGA
GAAAGCAGCAGCATTGATTGTGGAGACGGTATTGCGAGTCCTCACACAGG
TGTTGATTCAAGCAAAAACTAAGCTGCCGAGACAACAGCAGTTCAAAACT
GATTTGTTTATTATGTTGCAGGGGGCAATGCGGAAGGAGGACGCAGAGGT
AGTGGAGAGTTGTTTGTGGTCTCTATGGTTGGCGCATCCGGAGGAAAACG
TGCGGAGGTTGATGGACGATGGGGTACAATTCATGTTGCGGGCAAAATAT
GACTTGGCTGTTGCTCGATTCGACGCTGCATTAGCGGCGGATGGGGAGTT
TATTGAGGCAAGTAATAAGCGGGGTACGGCCCATTTTTTGGCGGGGAGGT
ATGAGGAGGCCCGAAGGGATGTGGAGGCGACTTTGAGTCGGGAGCCGTTA
CACTGGGGGGCGTTGTTGGGGAAGGGCCTGATTTATTATGAACAGGGCCA
GAAGGTCCAGGCGATTAAGGCATTCAGGGCTACCCTGAGGATTCACCCCT
GGAGCACAAACGTGGGGACGACATTGTTCCATACCCGGAAGCAGTTGGAG
GGGGAGGAGGCGGGAACGATGGCGGAGCATCCTTGA

Coding sequence (CDS) from alignment at chr3:1132705..1134840-

>NO03G03850.1 ID=NO03G03850.1|Name=NO03G03850.1|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr3:1132705..1134840- (Nannochloropsis oceanica)
ATGCCCCGCCCACCACCAATGACCCGCAGCGCCTTGCGCGCCGTAGTCCT
GTCCTTGTACCGCACATGCTTGCGATGGACTCAACTCCCTCTCGTTGAGC
GTAGCAAATTCTTGGCGGGTGACCACATGCCTCCCGCTCTCGCTGCCCTC
CAGCTTCCACCCCGCCTCCTAACAAACAAGGACGGCATACGAGAAGCCAT
ACGCACGCTCTTTCGAGCCAATGCCCAGGAAAAAAATGCCGAGGTGTTAT
CGGAGAAGGTAAATATGGCATTCGAGGGCCTACAATACCTCAATCGCTTT
ACTGGTACCTTGGAAAATGCGGAGGCCCGCCGAGAAGCAAATCGGAATAG
AGACGGAGTCACATTTCGGATAGGGCAGGTGGTACGGCACAAACTGTACA
ATTACCGAGCAATTATTGTGGGGTGGGATAAGCGGCCGATGATTGATGTG
AGCAATTGGGAAGGAGTCGTGCAGTCAACGCTGGGAGTGAATCAACCTTT
TTATCACTGCATACCCGACAGCAACGATACACTGCATTTCCTCGGTGGTG
TCCGCAAGCTCATGTACGTCGCACAAGAGAATCTTAAAATGTGCCACGCG
CTCGAAAGTAGGATTCACTCCGATGTGGTCCCCCAAGCCTTCGAATATTA
CGACACTACCACCAACTCATTTATCCCAACTGAGAGGATTGCATGGCAGT
ACCCGCTTGATCTCCCTTCCTCCTCCCCGACCTCGTCCTCTTCCTCCCGA
TGGTCAGCCAGTCGCAGGTTTAAAGTATCCGTCCAAAGGGCCAACCTCGT
TGATGCCTCCCGCCGCCTCAAACAGCATCTACACGATCTCTCCCACAAAA
TATGGCAGCATCTCGAGGTCCACTTTGGAGTTCTCGAGCGCTTTTCAACC
CAAGAACCCTTGGGGACTTTGCTTTCGTTGCTCACCGAATTGAAAGAGAT
GGATCCTTTCTTTTCTTCCTCGCTGTCCTCCTCTTCTTCAAAAGCCAGCA
TCACCAGCAGCACCAGCACCAGTACCAGCACCGGCACCTGCACAGACAAT
TTGAATGAGGTCTTGCCCGGCTATGATGCTCTACGAGTTCTCCGCGACCT
CCTCGCCTTCTGCGAGGACGCACATTCTACTCGCAAGCACTCCAACGACA
AAACAAACGTTCACTTTCACATCGGTCAAGTTGTCCGTCATCCCTCCCTG
GGCTATCGCGGCGTTATCAGCGGCTGGGAAAAATTCCCTCGAACAGGCCT
TCCTTCTGACCCCCCTTCTTTACAAGCACGCCATCCATATTACCGTGTCA
TTGTCAATGATCTCGATCGTGACTCGCCCTCCACCCCAGCTCCGGGTATG
GTGGTTCTGCCGCAAGAAATGCTCGAGGCGACCGCAGCGGAGGAGAGTGC
TGTGGTTGTAAGTCCTTTGATTCCTGACAACTTTCTGTTTTTTGATCCTA
TGACCAAAACATTTCAGCCTAATGCCATGTTGAAATTCAAATACCCGGAC
AAGGAGGAGGGTGGGGTAGAGGGAGGGGGGGATGGAGAGTTGAAGGACGA
GAAAGCAGCAGCATTGATTGTGGAGACGGTATTGCGAGTCCTCACACAGG
TGTTGATTCAAGCAAAAACTAAGCTGCCGAGACAACAGCAGTTCAAAACT
GATTTGTTTATTATGTTGCAGGGGGCAATGCGGAAGGAGGACGCAGAGGT
AGTGGAGAGTTGTTTGTGGTCTCTATGGTTGGCGCATCCGGAGGAAAACG
TGCGGAGGTTGATGGACGATGGGGTACAATTCATGTTGCGGGCAAAATAT
GACTTGGCTGTTGCTCGATTCGACGCTGCATTAGCGGCGGATGGGGAGTT
TATTGAGGCAAGTAATAAGCGGGGTACGGCCCATTTTTTGGCGGGGAGGT
ATGAGGAGGCCCGAAGGGATGTGGAGGCGACTTTGAGTCGGGAGCCGTTA
CACTGGGGGGCGTTGTTGGGGAAGGGCCTGATTTATTATGAACAGGGCCA
GAAGGTCCAGGCGATTAAGGCATTCAGGGCTACCCTGAGGATTCACCCCT
GGAGCACAAACGTGGGGACGACATTGTTCCATACCCGGAAGCAGTTGGAG
GGGGAGGAGGCGGGAACGATGGCGGAGCATCCTTGA

Synonyms

Publications