NO03G03600, NO03G03600 (gene) Nannochloropsis oceanica

Overview
NameNO03G03600
Unique NameNO03G03600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr3:1068938..1069834 -

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Properties
Property NameValue
DescriptionProtein FAM173B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1068938..1069834 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO03G03600 vs. NCBI_GenBank
Match: EWM29827.1 (hypothetical protein Naga_100017g67 [Nannochloropsis gaditana])

HSP 1 Score: 231.9 bits (590), Expect = 2.600e-57
Identity = 126/225 (56.00%), Postives = 158/225 (70.22%), Query Frame = 0
Query:   44 LFYGMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRFQLTLPASSPSLSPSSPLSLAVAEERVGAECKSGTVSNNTKAEIELLEVSEDEFSVYRV 269
            L YG A  VGLLT+ SLPFLV+PML+GN         +KYK +FD++LPRH+   R   + P RFIDLGHG GEAVV+AAQRGY A GVELNPTLYLLS+ NVWRH L WP + RVRLV G+MW++D+  G QDVILMFGVQSLM +L  ++ +EA+  ALVVLYRF+L L       S +SP   A+ E        +G   ++ +AEI++LEV+ED FSVYR+
Sbjct:   20 LLYGAASVVGLLTLGSLPFLVIPMLRGNXXXXXXXXXSKYKTIFDEVLPRHMPR-RRAGSPPLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDL------RSRASPTGAALRE-------ITGRDGSDEQAEIKILEVTEDGFSVYRI 230          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_013761216.1 (hypothetical protein AMSG_02195 [Thecamonas trahens ATCC 50062] >KNC56180.1 hypothetical protein AMSG_02195 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 87.8 bits (216), Expect = 6.200e-14
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 0
Query:   47 GMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRFQL 213
            G A   G++   + PFL  P+ +   +PY+     + + + D+I         P+     R +DLG G G  V++AA+RG  A G E+N  L L S W  WR  +W     +      D+WK DL     D I++FGV  ++AQ+ +K+ AE  D A V+  RF++
Sbjct:   27 GCAAVTGVMAALAAPFL-TPVFRKFTIPYVPAAPTQVRMVLDQI---------PRLDKGARVVDLGSGDGRVVIAAAKRGAMATGYEINYWLVLYSRWRAWREGVW----AQTTFRKADLWKTDL--SGFDAIVVFGVAEMLAQMESKLKAELADNAQVIACRFKM 176          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_011433957.1 (PREDICTED: protein FAM173B [Crassostrea gigas] >EKC21534.1 hypothetical protein CGI_10003828 [Crassostrea gigas])

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-10
Identity = 63/209 (30.14%), Postives = 105/209 (50.24%), Query Frame = 0
Query:   20 SLINTAFQAASRDSSTSNSSTSLFLFYG-MAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRFQLTLPASSPSLSPSSPL 228
            S++N   +A+S  S     S S ++  G +AG V  + + + PF + P L+   LP++     + +N+F           R  +    +F+DLG G G  V  AA+R + A GVE+N  L L S +  +R  L     ++      D+WK  L+  + D I++FGVQ++M +L  K++AE K+   VV  RF L      P++ P + +
Sbjct:    3 SIVN---EASSTSSKPKEKSYSGYIITGTLAGVVFGIHLIAGPF-ITPALRRICLPFVPATEEQVENVF-----------RALKGRKGKFVDLGSGDGRLVREAAKRNFTAHGVEMNIWLVLYSKFKTYRQGL----SSKATYSRTDLWKHSLK--QYDNIVIFGVQNMMKELEKKIIAECKEDVRVVACRFPL------PNIEPEAEI 184          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_023719658.1 (protein FAM173B [Cryptotermes secundus])

HSP 1 Score: 75.9 bits (185), Expect = 2.400e-10
Identity = 61/173 (35.26%), Postives = 82/173 (47.40%), Query Frame = 0
Query:   38 SSTSLFLFYGMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRF 211
            S T L L     GA   L++  LPF V P L+   LPY+     + KN+   +  R             R IDLG G G  V++AA+ G+ A GVELNP L   S +  +R      F    R  C D+WK +L+      I++FGVQ +M QL  K+  E  +   VV  RF
Sbjct:   20 SKTGLILISLSGGAAVTLSVICLPF-VSPALRRFCLPYVPATATQIKNVMSALAGR-----------SGRLIDLGSGDGRIVLTAAKAGFVADGVELNPWLVAYSKFQAFR----LGFCNCARFYCQDLWKFNLK--PYPNIVIFGVQEMMPQLEMKLEKELCNDVHVVACRF 174          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_023235730.1 (protein FAM173B-like [Centruroides sculpturatus])

HSP 1 Score: 75.1 bits (183), Expect = 4.100e-10
Identity = 67/212 (31.60%), Postives = 98/212 (46.23%), Query Frame = 0
Query:   44 LFYGMAGAVGL-LTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRFQLTLPASSPSLSPSSPLSLAVAEERVGAECKSGTVSNNTKAEIE 255
            +  G+ G VG  +T+ SLPFL  P  +   LP++     +   +F  +      +GR       + +DLG G G  V+ AA+RG  A G+ELNP L L S      + +        R  C D+WK +L     + I++FGV S+MAQL  K+  E  DG+ V+  RF L      PS  P +     V    V     S   S N++  I+
Sbjct:   10 IMVGLTGFVGFGITLVSLPFL-FPAFRRVCLPFLPATKRQLDLVFTHL------NGR-----KGKLVDLGSGDGRIVIEAAKRGLLAEGIELNPWLVLYSRAKALTNGV----SGNTRFKCQDLWKVNL--SPYNNIVIFGVDSMMAQLEEKLAMELVDGSWVIACRFPL------PSWKPITITEAGVDSVWVYERGISDARSTNSQRNID 197          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_007260253.2 (protein FAM173B [Astyanax mexicanus])

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-9
Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = 0
Query:   48 MAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRF 211
            + G+V  L   + PF V P L+   LP++    A+  N+   +           R+     +D+G G G  V++AA+ G+ A G ELNP L L S +  WR  +      R      D+WK  + F +   +++FGV  +M QL AK+ +E +  A VV  RF
Sbjct:   44 VGGSVCALYALAGPF-VAPALRKVCLPFVPATTAQVSNVLSVL-----------RSRSGALVDIGSGDGRIVIAAAKEGFRAVGFELNPWLVLYSRYRAWREGV----HHRTSFYLSDLWK--VSFSQYSNVVIFGVPQMMEQLEAKLQSELQTSAKVVACRF 188          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_012945842.1 (PREDICTED: protein FAM173B-like [Aplysia californica])

HSP 1 Score: 73.2 bits (178), Expect = 1.600e-9
Identity = 62/196 (31.63%), Postives = 92/196 (46.94%), Query Frame = 0
Query:   28 AASRDSSTSNSSTSLFLFYGMAGA-VGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRFQLTLPASSPSLS 223
            AA + S     S    +  G++GA V  +T    PF V+P L+  ALPY+     +  N+            R  R      ID+G G G   ++AA+RG+ A+GVELN  L   S W  WR  +     +       D+WK DL   +   +++FGV+++M  L  K+  E   G  VV  RF   LP+  PS++
Sbjct:   37 AAGKHSQPPKLSRRGAVMLGVSGAFVAGVTAVMAPF-VLPGLRRFALPYIPASSEQVSNVL-----------RALRGRTGSLIDIGSGDGRITIAAAERGFQASGVELNRWLVWYSRWVAWRQNV----HSETNFFRRDLWKTDLSCYKN--VVIFGVETMMPDLEEKMTQELVPGTAVVACRF--PLPSWQPSMT 212          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_015812796.1 (PREDICTED: protein FAM173B-like [Nothobranchius furzeri])

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-9
Identity = 56/175 (32.00%), Postives = 86/175 (49.14%), Query Frame = 0
Query:   36 SNSSTSLFLFYGMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRF 211
            S S   L +   + G++  L   + PF V P L+   LP++    A+ +N+  K+L          RA     +D+G G G  V++AA+RG+ A+G ELNP L   S +N WR  +       +     D+WK +  F +   +++FGV  +M QL  K+  E  D A VV  RF
Sbjct:   23 SRSRLGLIVTGVVGGSLVALYAVATPF-VAPALRKVCLPFVPATTAQVENVL-KVL----------RARSGTLVDIGSGDGRIVIAAAKRGFQASGFELNPWLVWYSRYNAWREGVHRSTSFHI----SDLWKAN--FAQYSNVVIFGVPQMMDQLELKLANELSDTAKVVACRF 179          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_020765695.1 (protein FAM173B isoform X3 [Odocoileus virginianus texanus])

HSP 1 Score: 72.4 bits (176), Expect = 2.700e-9
Identity = 49/167 (29.34%), Postives = 76/167 (45.51%), Query Frame = 0
Query:   44 LFYGMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRF 211
            LF G+ G   +   A     + P L+   LP++     + +N+   +  R               +D+G G G  V++AA+ G+ A G ELNP L   S +  WR  +        R    D+WK  + F +   +++FGV  +MAQL  K+  E KD A V+  RF
Sbjct:   49 LFTGIVGGTLVAVYAVATPFITPALRRICLPFVPATTKQIENVVKMLQCRR-----------GPLVDIGSGDGRIVIAAAKEGFTAVGYELNPWLVWYSRYRAWREGV----QASARFYISDLWK--VTFSQYSNVVIFGVPQMMAQLEEKLELELKDDARVIACRF 198          
BLAST of NO03G03600 vs. NCBI_GenBank
Match: XP_020765694.1 (protein FAM173B isoform X2 [Odocoileus virginianus texanus])

HSP 1 Score: 72.4 bits (176), Expect = 2.700e-9
Identity = 49/167 (29.34%), Postives = 76/167 (45.51%), Query Frame = 0
Query:   44 LFYGMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRF 211
            LF G+ G   +   A     + P L+   LP++     + +N+   +  R               +D+G G G  V++AA+ G+ A G ELNP L   S +  WR  +        R    D+WK  + F +   +++FGV  +MAQL  K+  E KD A V+  RF
Sbjct:   72 LFTGIVGGTLVAVYAVATPFITPALRRICLPFVPATTKQIENVVKMLQCRR-----------GPLVDIGSGDGRIVIAAAKEGFTAVGYELNPWLVWYSRYRAWREGV----QASARFYISDLWK--VTFSQYSNVVIFGVPQMMAQLEEKLELELKDDARVIACRF 221          
The following BLAST results are available for this feature:
BLAST of NO03G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29827.12.600e-5756.00hypothetical protein Naga_100017g67 [Nannochlorops... [more]
XP_013761216.16.200e-1432.53hypothetical protein AMSG_02195 [Thecamonas trahen... [more]
XP_011433957.11.400e-1030.14PREDICTED: protein FAM173B [Crassostrea gigas] >EK... [more]
XP_023719658.12.400e-1035.26protein FAM173B [Cryptotermes secundus][more]
XP_023235730.14.100e-1031.60protein FAM173B-like [Centruroides sculpturatus][more]
XP_007260253.21.200e-931.29protein FAM173B [Astyanax mexicanus][more]
XP_012945842.11.600e-931.63PREDICTED: protein FAM173B-like [Aplysia californi... [more]
XP_015812796.12.000e-932.00PREDICTED: protein FAM173B-like [Nothobranchius fu... [more]
XP_020765695.12.700e-929.34protein FAM173B isoform X3 [Odocoileus virginianus... [more]
XP_020765694.12.700e-929.34protein FAM173B isoform X2 [Odocoileus virginianus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005534NSK005534Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03600.1NO03G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572675gene_1555Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g67gene838Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03600.1NO03G03600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03600 ID=NO03G03600|Name=NO03G03600|organism=Nannochloropsis oceanica|type=gene|length=897bp
ATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAATACGAGCGGCAA
TCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAGCCGCGACTCAA
GCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACGGCATGGCAGGT
GCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTGGTCGTACCTAT
GCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGTTGCCAAATACA
AGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACCACGGACGTCCA
AAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCACGGCTTTGGAGA
GGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGCAGGCGTGGAGC
TCAATCCCACACTATATTTGCTATCGGTATGGAACGTGTGGCGACATCGT
CTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGCGGTGACATGTG
GAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTTAATGTTTGGGG
TACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAGCTGAGGCCAAG
GATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACCCTGCCAGCTTC
ATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGCTGTGGCGGAAG
AGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCAATAATACAAAG
GCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTTTCCGTGTATCG
TGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAATGGTAGAGAATG
CAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGAGGAAATGA
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protein sequence of NO03G03600.1

>NO03G03600.1-protein ID=NO03G03600.1-protein|Name=NO03G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MPPKNEDAKRTSNTSGNQVSLINTAFQAASRDSSTSNSSTSLFLFYGMAG
AVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRP
KRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHR
LWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAK
DGALVVLYRFQLTLPASSPSLSPSSPLSLAVAEERVGAECKSGTVSNNTK
AEIELLEVSEDEFSVYRVLRPVSWIREGGMVENANNDSSSSSRSRKRK*
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Synonyms
Publications