NO03G03600.1, NO03G03600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03600.1
Unique NameNO03G03600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr3:1068938..1069834 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1068938..1069834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03600.1 vs.
Match: EWM29827.1 (hypothetical protein Naga_100017g67 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.400e-63
Identity = 134/225 (59.56%), Postives = 166/225 (73.78%), Query Frame = 0 
Query:   44 LFYGMAGAVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRPKRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHRLWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAKDGALVVLYRFQLTLPASSPSLSPSSPLSLAVAEERVGAECKSGTVSNNTKAEIELLEVSEDEFSVYRV 269
            L YG A  VGLLT+ SLPFLV+PML+GNALPYMNIP++KYK +FD++LPRH+   R     P RFIDLGHG GEAVV+AAQRGY A GVELNPTLYLLS+ NVWRH L WP + RVRLV G+MW++D+  G QDVILMFGVQSLM +L  ++ +EA+  ALVVLYRF+L L       S +SP   A+ E        +G   ++ +AEI++LEV+ED FSVYR+
Sbjct:   20 LLYGAASVVGLLTLGSLPFLVIPMLRGNALPYMNIPMSKYKTIFDEVLPRHMPRRRAGSP-PLRFIDLGHGMGEAVVNAAQRGYIATGVELNPTLYLLSICNVWRHGLLWPLEPRVRLVYGNMWRKDMELGRQDVILMFGVQSLMTRLAERLRSEAQHDALVVLYRFKLDL------RSRASPTGAALRE-------ITGRDGSDEQAEIKILEVTEDGFSVYRI 230
The following BLAST results are available for this feature:
BLAST of NO03G03600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29827.11.400e-6359.56hypothetical protein Naga_100017g67 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03600NO03G03600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03600.1NO03G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03600.1.cds1NO03G03600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03600.1 ID=NO03G03600.1|Name=NO03G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
ATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAATACGAGCGGCAA
TCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAGCCGCGACTCAA
GCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACGGCATGGCAGGT
GCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTGGTCGTACCTAT
GCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGTTGCCAAATACA
AGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACCACGGACGTCCA
AAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCACGGCTTTGGAGA
GGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGCAGGCGTGGAGC
TCAATCCCACACTATATTTGCTATCGGTATGGAACGTGTGGCGACATCGT
CTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGCGGTGACATGTG
GAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTTAATGTTTGGGG
TACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAGCTGAGGCCAAG
GATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACCCTGCCAGCTTC
ATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGCTGTGGCGGAAG
AGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCAATAATACAAAG
GCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTTTCCGTGTATCG
TGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAATGGTAGAGAATG
CAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGAGGAAATGA
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protein sequence of NO03G03600.1

>NO03G03600.1-protein ID=NO03G03600.1-protein|Name=NO03G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MPPKNEDAKRTSNTSGNQVSLINTAFQAASRDSSTSNSSTSLFLFYGMAG
AVGLLTMASLPFLVVPMLKGNALPYMNIPVAKYKNLFDKILPRHIYHGRP
KRALPHRFIDLGHGFGEAVVSAAQRGYFAAGVELNPTLYLLSVWNVWRHR
LWWPFDTRVRLVCGDMWKRDLRFGEQDVILMFGVQSLMAQLTAKVLAEAK
DGALVVLYRFQLTLPASSPSLSPSSPLSLAVAEERVGAECKSGTVSNNTK
AEIELLEVSEDEFSVYRVLRPVSWIREGGMVENANNDSSSSSRSRKRK*
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mRNA from alignment at chr3:1068938..1069834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03600.1 ID=NO03G03600.1|Name=NO03G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp|location=Sequence derived from alignment at chr3:1068938..1069834- (Nannochloropsis oceanica)
ATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAATACGAGCGGCAA
TCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAGCCGCGACTCAA
GCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACGGCATGGCAGGT
GCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTGGTCGTACCTAT
GCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGTTGCCAAATACA
AGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACCACGGACGTCCA
AAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCACGGCTTTGGAGA
GGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGCAGGCGTGGAGC
TCAATCCCACACTATATTTGCTATCGGTATGGAACGTGTGGCGACATCGT
CTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGCGGTGACATGTG
GAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTTAATGTTTGGGG
TACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAGCTGAGGCCAAG
GATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACCCTGCCAGCTTC
ATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGCTGTGGCGGAAG
AGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCAATAATACAAAG
GCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTTTCCGTGTATCG
TGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAATGGTAGAGAATG
CAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGAGGAAATGA
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Coding sequence (CDS) from alignment at chr3:1068938..1069834-

>NO03G03600.1 ID=NO03G03600.1|Name=NO03G03600.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr3:1068938..1069834- (Nannochloropsis oceanica)
ATGCCGCCTAAAAATGAAGATGCAAAGCGCACAAGTAATACGAGCGGCAA
TCAAGTCTCTCTAATTAACACCGCCTTTCAGGCGGCCAGCCGCGACTCAA
GCACCAGCAATTCCTCCACATCTTTATTTCTCTTTTACGGCATGGCAGGT
GCAGTGGGGCTGCTGACGATGGCTTCCTTACCATTCTTGGTCGTACCTAT
GCTGAAAGGAAATGCCCTACCTTATATGAACATTCCCGTTGCCAAATACA
AGAATCTCTTTGACAAGATATTGCCCCGCCACATCTACCACGGACGTCCA
AAAAGGGCTCTGCCGCATCGCTTCATAGATTTAGGGCACGGCTTTGGAGA
GGCCGTCGTGAGTGCGGCGCAACGAGGGTACTTCGCCGCAGGCGTGGAGC
TCAATCCCACACTATATTTGCTATCGGTATGGAACGTGTGGCGACATCGT
CTCTGGTGGCCATTTGACACTCGCGTGAGGCTTGTGTGCGGTGACATGTG
GAAGCGAGATTTACGTTTTGGTGAGCAAGACGTCATCTTAATGTTTGGGG
TACAAAGTCTCATGGCTCAATTGACAGCGAAGGTACTAGCTGAGGCCAAG
GATGGTGCATTAGTGGTGCTGTATCGCTTCCAGCTCACCCTGCCAGCTTC
ATCACCGTCTTTGTCGCCGTCATCACCTTTGTCGTTGGCTGTGGCGGAAG
AGAGAGTAGGAGCGGAATGCAAGAGTGGGACGGTGAGCAATAATACAAAG
GCCGAAATTGAATTGCTGGAAGTGAGCGAAGATGAGTTTTCCGTGTATCG
TGTGCTTCGGCCGGTATCATGGATAAGAGAAGGAGGAATGGTAGAGAATG
CAAACAACGACAGCAGCAGCAGCAGCAGGAGTAGGAAGAGGAAATGA
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Synonyms
Publications