NO03G03580, NO03G03580 (gene) Nannochloropsis oceanica

Overview
NameNO03G03580
Unique NameNO03G03580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1138
Alignment locationchr3:1065537..1066674 +

Link to JBrowse

Properties
Property NameValue
DescriptionDnl-type zinc finger
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1065537..1066674 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024158Mt_import_TIM15
IPR007853Znf_DNL-typ
Homology
BLAST of NO03G03580 vs. NCBI_GenBank
Match: EWM29858.1 (dnl-type zinc finger [Nannochloropsis gaditana])

HSP 1 Score: 207.2 bits (526), Expect = 6.500e-50
Identity = 133/223 (59.64%), Postives = 153/223 (68.61%), Query Frame = 0
Query:   39 SSRRRGAFQPCRRSLLPASTLLFAPLPPHQRQYDHLE-----GRRWQLLPLAAAGGKGFGKKPNXXXXXXXXXXXXXXXXXXXXXXGPDIIRPTFSQRDRREEAAKPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKNNPQLAKK 257
            +S    AFQPC     PA  +  + LP   R+ D LE     GRR +   L  A GKGFGKKP        XXXXXXXXXX     GP IIRPTFS R     +A  A      ++++ S P RKFQMLYTCNICEGRNLIQVDR+AFTEGIVVARCKHCDAKHLVADNLSKLDFG ++ KG K+GE+ P  GGKVTL+D+LAA G+EAKYLDIK+NP+LA K
Sbjct:   73 TSNCNAAFQPC-----PAPLITPSSLPLLSRRQDLLESRRAHGRRKEFF-LTVARGKGFGKKPR--GDGEEXXXXXXXXXXSKVEEGPSIIRPTFSHRG---SSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKG-KEGESNP-AGGKVTLDDILAARGEEAKYLDIKSNPELAAK 282          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: CBJ48476.1 (heat shock protein, mitochondrial protein import, putative; mitochondrial translocase complex subunit, putative [Ectocarpus siliculosus])

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-10
Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 0
Query:  157 RKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASG---QEAKYLDIKNNPQLAKKYDLVVLEDGTVELAPKE 274
            R+  M +TCN+CEG +   +++ A+ EGIV+  C+ C A+HL+ADNL KLDF              P  G  +  E+ + ++G   +  K       P++A+K+D+ + +DG + L+PK+
Sbjct:  547 RQLFMQFTCNLCEGVSQYMINKNAYEEGIVICTCQSCGARHLIADNLKKLDF--------------PAFGNNI--EEYMQSTGTPDEVTKGRAPDLTPEIAEKFDVAMGKDGVLTLSPKD 650          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: OLP83534.1 (Sodium/calcium exchanger 2 [Symbiodinium microadriaticum])

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9
Identity = 50/137 (36.50%), Postives = 70/137 (51.09%), Query Frame = 0
Query:  139 KPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVT--LEDLLAASGQEAKYLDIKNNPQLAKKYDLVVLEDGTVELAPKE 274
            +PAA  +I  A    + PRKFQ+L+TC ICE RN   + R+A+ +GIV+A C  C ++HL+AD    LD       G  D E     G  VT    D     G + +  D+ +  Q  K   LV  +DG +E  P+E
Sbjct:  904 QPAARGSIPFA---RVAPRKFQILFTCKICETRNSHMISRLAYQQGIVIATCPGCGSRHLLADKTGLLDV------GIWDVEQLAQQGENVTRLTTDGYKQVGADLQVEDLPDMVQDEKSPLLVRNKDGLIEALPEE 1031          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_002181736.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46950.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.8 bits (177), Expect = 1.900e-9
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query:  126 PTFSQRDRREEAAKPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNL 204
            P F    R   ++  + A N+ T + ++L  RKF +LYTCN+C+ RN+ +V RIA+ +G+V+A C+ C  +HL+ADNL
Sbjct:  128 PAFGATSRGMHSSATSRAKNM-TTTDATLVNRKFDLLYTCNLCDTRNVHKVTRIAYHKGVVIATCRGCAVQHLIADNL 204          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: CRK96452.1 (CLUMA_CG009871, isoform A [Clunio marinus])

HSP 1 Score: 67.4 bits (163), Expect = 8.000e-8
Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 0
Query:  126 PTFSQRDRRE-EAAKPAAAPNIATASSSSLP----PRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKN 250
            PT S   + E  A KP       T   SS+P     +K QM+YTC +C  RN   + ++A+T+G+V+ RC  C+  HLVADNL             KD         KV +ED+L   G+E + + + N
Sbjct:   41 PTISSCKQTELNADKP-------TDQLSSVPLGQLEKKMQMMYTCKVCGTRNSQTISKVAYTQGVVIVRCSGCENNHLVADNLGWF----------KD--------KKVNIEDILREKGEEVRKVTLGN 144          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: OEU19248.1 (hypothetical protein FRACYDRAFT_235297 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0
Query:  158 KFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNL 204
            KF + YTCN+CE RN + V R+A+ EG+V+A CK C AKH +ADNL
Sbjct:   74 KFSLQYTCNVCEHRNRVIVSRMAYREGVVIAICKGCTAKHWIADNL 119          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_019640933.1 (PREDICTED: mitochondrial protein import protein ZIM17-like isoform X1 [Branchiostoma belcheri])

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 0
Query:  148 TASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAK 244
            +AS   + P K Q++YTC +C+ R++  + ++A+T+G+V+ +C  CD  HL+ADNL                       G+  +E++LAA G+  +
Sbjct:  111 SASLGQVEPEKMQLIYTCKVCQTRSVKVISKVAYTKGVVIVKCSGCDNNHLIADNLGWFS----------------QEQGRRNIEEILAAKGETVR 190          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_019640934.1 (PREDICTED: uncharacterized protein LOC109482593 isoform X2 [Branchiostoma belcheri])

HSP 1 Score: 65.9 bits (159), Expect = 2.300e-7
Identity = 23/56 (41.07%), Postives = 40/56 (71.43%), Query Frame = 0
Query:  148 TASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNL 204
            +AS   + P K Q++YTC +C+ R++  + ++A+T+G+V+ +C  CD  HL+ADNL
Sbjct:  111 SASLGQVEPEKMQLIYTCKVCQTRSVKVISKVAYTKGVVIVKCSGCDNNHLIADNL 166          
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_013758204.1 (inositol 5-phosphatase [Thecamonas trahens ATCC 50062] >KNC49184.1 inositol 5-phosphatase [Thecamonas trahens ATCC 50062])

HSP 1 Score: 64.7 bits (156), Expect = 5.200e-7
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 0
Query:  155 PPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLD 247
            P     M++TC++CE R+     R A+  G+V+ RC  C + HLVADNL   D G   G GA  G          TLE +L A G+E + LD
Sbjct: 1195 PDGTLMMVFTCDVCETRSAKTFSRHAYHHGVVLVRCDGCQSHHLVADNLGWTDAG---GSGAPPG----------TLEAILKAKGKELRKLD 1273          
The following BLAST results are available for this feature:
BLAST of NO03G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM29858.16.500e-5059.64dnl-type zinc finger [Nannochloropsis gaditana][more]
CBJ48476.11.700e-1033.33heat shock protein, mitochondrial protein import, ... [more]
OLP83534.11.500e-936.50Sodium/calcium exchanger 2 [Symbiodinium microadri... [more]
XP_002181736.11.900e-942.31predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CRK96452.18.000e-834.11CLUMA_CG009871, isoform A [Clunio marinus][more]
OEU19248.11.000e-758.70hypothetical protein FRACYDRAFT_235297 [Fragilario... [more]
XP_019640933.11.400e-730.21PREDICTED: mitochondrial protein import protein ZI... [more]
XP_019640934.12.300e-741.07PREDICTED: uncharacterized protein LOC109482593 is... [more]
XP_013758204.15.200e-739.13inositol 5-phosphatase [Thecamonas trahens ATCC 50... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005537NSK005537Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03580.1NO03G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572669gene_1552Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g69gene840Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03580.1NO03G03580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03580 ID=NO03G03580|Name=NO03G03580|organism=Nannochloropsis oceanica|type=gene|length=1138bp
ACAGGCACAATTTCCAACACTAGACGCAACGAGATGGAAACCCGCGGCAG
AATACACGTGACCCTCCAATCCCTTGTTGTCCTTTTGCTGCTTCTCGCAG
CAGCAACGACGCATGGCTTCTATCATCCCATAGgtacgtcactcctctaa
atacgcgcacatacgattttggtgcactcacttccgctccaccccacagG
TCCCACTTTCATATCGAGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGGC
GATCCCTGTTGCCCGCATCAACACTGTTATTCGCCCCGCTGCCACCGCAT
CAGCGCCAGTACGACCATCTAGAAGGGCGGCGATGGCAGCTCTTGCCATT
GGCGGCGGCGGGCGGCAAAGGCTTCGGGAAAAAACCAAACAAGGAGGGAG
GAGGAGAGAGTAGCAAACAACAGCCTATGCAGCAGGGAACTGGCAAGgtg
ggaagctcgacgacctgatcgggcaaagaagcgcaacctcatgttctaac
ttctcccacacatctcctcccacaaacaaagGCGGACAAAGGCCCTGACA
TCATCCGCCCAACCTTCAGTCAGCGAGACCGTAGAGAAGAAGCCGCCAAG
CCTGCCGCAGCTCCCAACATTGCCACTGCGTCCTCCTCCTCCTTGCCCCC
CCGGAAATTTCAAATGCTCTATACGTGCAACATCTGCGAAGGCCGAAACC
TAATTCAAGTGGACCGTATTGCATTTACCGAGGGGATTGTTGTGGCCCGT
TGCAAACACTGTGATGCCAAACATTTGGTCGCAGATAATTTAAGTAAGCT
GGACTTTGGGGCCGTTCTAGGAAAGGGCGCCAAGGATGGCGAGGCTCCTC
CAACGGGTGGTGGGAAAGTGACGCTGGAGGATCTGTTGGCGGCGAGTGGA
CAGGAGGCCAAGTATCTCGACATAAAGAATAATCCGCAGCTAGCTAAAAA
GTATGATTTGGTGGTCTTGGAGGATGGGACGGTGGAGCTGGCGCCCAAGG
AGAAGAGTGAGGAGTAGACTGCGGGAGGGAGGAAAGGAGGGAAGAGGAAA
TTATACATAAAAATGTGTTTTGGTTTGTCGGTACTTTGGCGCAGTCGGGC
CAGGAAATGAAAGAAGAAAGAAATCGAAAATGATAATA
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protein sequence of NO03G03580.1

>NO03G03580.1-protein ID=NO03G03580.1-protein|Name=NO03G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
METRGRIHVTLQSLVVLLLLLAAATTHGFYHPIGPTFISSRRRGAFQPCR
RSLLPASTLLFAPLPPHQRQYDHLEGRRWQLLPLAAAGGKGFGKKPNKEG
GGESSKQQPMQQGTGKADKGPDIIRPTFSQRDRREEAAKPAAAPNIATAS
SSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVA
DNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKNN
PQLAKKYDLVVLEDGTVELAPKEKSEE*
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Synonyms
Publications