NO03G03580, NO03G03580 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G03580 vs. NCBI_GenBank
Match: EWM29858.1 (dnl-type zinc finger [Nannochloropsis gaditana]) HSP 1 Score: 207.2 bits (526), Expect = 6.500e-50 Identity = 133/223 (59.64%), Postives = 153/223 (68.61%), Query Frame = 0 Query: 39 SSRRRGAFQPCRRSLLPASTLLFAPLPPHQRQYDHLE-----GRRWQLLPLAAAGGKGFGKKPNXXXXXXXXXXXXXXXXXXXXXXGPDIIRPTFSQRDRREEAAKPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKNNPQLAKK 257 +S AFQPC PA + + LP R+ D LE GRR + L A GKGFGKKP XXXXXXXXXX GP IIRPTFS R +A A ++++ S P RKFQMLYTCNICEGRNLIQVDR+AFTEGIVVARCKHCDAKHLVADNLSKLDFG ++ KG K+GE+ P GGKVTL+D+LAA G+EAKYLDIK+NP+LA K Sbjct: 73 TSNCNAAFQPC-----PAPLITPSSLPLLSRRQDLLESRRAHGRRKEFF-LTVARGKGFGKKPR--GDGEEXXXXXXXXXXSKVEEGPSIIRPTFSHRG---SSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKG-KEGESNP-AGGKVTLDDILAARGEEAKYLDIKSNPELAAK 282
BLAST of NO03G03580 vs. NCBI_GenBank
Match: CBJ48476.1 (heat shock protein, mitochondrial protein import, putative; mitochondrial translocase complex subunit, putative [Ectocarpus siliculosus]) HSP 1 Score: 76.3 bits (186), Expect = 1.700e-10 Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 0 Query: 157 RKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASG---QEAKYLDIKNNPQLAKKYDLVVLEDGTVELAPKE 274 R+ M +TCN+CEG + +++ A+ EGIV+ C+ C A+HL+ADNL KLDF P G + E+ + ++G + K P++A+K+D+ + +DG + L+PK+ Sbjct: 547 RQLFMQFTCNLCEGVSQYMINKNAYEEGIVICTCQSCGARHLIADNLKKLDF--------------PAFGNNI--EEYMQSTGTPDEVTKGRAPDLTPEIAEKFDVAMGKDGVLTLSPKD 650
BLAST of NO03G03580 vs. NCBI_GenBank
Match: OLP83534.1 (Sodium/calcium exchanger 2 [Symbiodinium microadriaticum]) HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9 Identity = 50/137 (36.50%), Postives = 70/137 (51.09%), Query Frame = 0 Query: 139 KPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVT--LEDLLAASGQEAKYLDIKNNPQLAKKYDLVVLEDGTVELAPKE 274 +PAA +I A + PRKFQ+L+TC ICE RN + R+A+ +GIV+A C C ++HL+AD LD G D E G VT D G + + D+ + Q K LV +DG +E P+E Sbjct: 904 QPAARGSIPFA---RVAPRKFQILFTCKICETRNSHMISRLAYQQGIVIATCPGCGSRHLLADKTGLLDV------GIWDVEQLAQQGENVTRLTTDGYKQVGADLQVEDLPDMVQDEKSPLLVRNKDGLIEALPEE 1031
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_002181736.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46950.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 72.8 bits (177), Expect = 1.900e-9 Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0 Query: 126 PTFSQRDRREEAAKPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNL 204 P F R ++ + A N+ T + ++L RKF +LYTCN+C+ RN+ +V RIA+ +G+V+A C+ C +HL+ADNL Sbjct: 128 PAFGATSRGMHSSATSRAKNM-TTTDATLVNRKFDLLYTCNLCDTRNVHKVTRIAYHKGVVIATCRGCAVQHLIADNL 204
BLAST of NO03G03580 vs. NCBI_GenBank
Match: CRK96452.1 (CLUMA_CG009871, isoform A [Clunio marinus]) HSP 1 Score: 67.4 bits (163), Expect = 8.000e-8 Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 0 Query: 126 PTFSQRDRRE-EAAKPAAAPNIATASSSSLP----PRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKN 250 PT S + E A KP T SS+P +K QM+YTC +C RN + ++A+T+G+V+ RC C+ HLVADNL KD KV +ED+L G+E + + + N Sbjct: 41 PTISSCKQTELNADKP-------TDQLSSVPLGQLEKKMQMMYTCKVCGTRNSQTISKVAYTQGVVIVRCSGCENNHLVADNLGWF----------KD--------KKVNIEDILREKGEEVRKVTLGN 144
BLAST of NO03G03580 vs. NCBI_GenBank
Match: OEU19248.1 (hypothetical protein FRACYDRAFT_235297 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7 Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0 Query: 158 KFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNL 204 KF + YTCN+CE RN + V R+A+ EG+V+A CK C AKH +ADNL Sbjct: 74 KFSLQYTCNVCEHRNRVIVSRMAYREGVVIAICKGCTAKHWIADNL 119
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_019640933.1 (PREDICTED: mitochondrial protein import protein ZIM17-like isoform X1 [Branchiostoma belcheri]) HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7 Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 148 TASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAK 244 +AS + P K Q++YTC +C+ R++ + ++A+T+G+V+ +C CD HL+ADNL G+ +E++LAA G+ + Sbjct: 111 SASLGQVEPEKMQLIYTCKVCQTRSVKVISKVAYTKGVVIVKCSGCDNNHLIADNLGWFS----------------QEQGRRNIEEILAAKGETVR 190
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_019640934.1 (PREDICTED: uncharacterized protein LOC109482593 isoform X2 [Branchiostoma belcheri]) HSP 1 Score: 65.9 bits (159), Expect = 2.300e-7 Identity = 23/56 (41.07%), Postives = 40/56 (71.43%), Query Frame = 0 Query: 148 TASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNL 204 +AS + P K Q++YTC +C+ R++ + ++A+T+G+V+ +C CD HL+ADNL Sbjct: 111 SASLGQVEPEKMQLIYTCKVCQTRSVKVISKVAYTKGVVIVKCSGCDNNHLIADNL 166
BLAST of NO03G03580 vs. NCBI_GenBank
Match: XP_013758204.1 (inositol 5-phosphatase [Thecamonas trahens ATCC 50062] >KNC49184.1 inositol 5-phosphatase [Thecamonas trahens ATCC 50062]) HSP 1 Score: 64.7 bits (156), Expect = 5.200e-7 Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 0 Query: 155 PPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLD 247 P M++TC++CE R+ R A+ G+V+ RC C + HLVADNL D G G GA G TLE +L A G+E + LD Sbjct: 1195 PDGTLMMVFTCDVCETRSAKTFSRHAYHHGVVLVRCDGCQSHHLVADNLGWTDAG---GSGAPPG----------TLEAILKAKGKELRKLD 1273 The following BLAST results are available for this feature:
BLAST of NO03G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 9
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G03580 ID=NO03G03580|Name=NO03G03580|organism=Nannochloropsis oceanica|type=gene|length=1138bpback to top protein sequence of NO03G03580.1 >NO03G03580.1-protein ID=NO03G03580.1-protein|Name=NO03G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bpback to top Synonyms
Publications
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