NO03G03580.1, NO03G03580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03580.1
Unique NameNO03G03580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length988
Alignment locationchr3:1065537..1066674 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1065537..1066674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03580.1 vs.
Match: EWM29858.1 (dnl-type zinc finger [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.300e-53
Identity = 136/250 (54.40%), Postives = 161/250 (64.40%), Query Frame = 0 
Query:   12 QSLVVLLLLLAAATTHGFYHPIGPTFISSRRRGAFQPCRRSLLPASTLLFAPLPPHQRQYDHLE-----GRRWQLLPLAAAGGKGFGKKPNKEGGGESSKQQPMQQGTGKADKGPDIIRPTFSQRDRREEAAKPAAAPNIATASSSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVADNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKNNPQLAKK 257
            Q + VLL   +     G    IG    +S    AFQPC     PA  +  + LP   R+ D LE     GRR +   L  A GKGFGKKP   G GE   +Q   Q   K ++GP IIRPTFS R     +A  A      ++++ S P RKFQMLYTCNICEGRNLIQVDR+AFTEGIVVARCKHCDAKHLVADNLSKLDFG ++ KG K+GE+ P  GGKVTL+D+LAA G+EAKYLDIK+NP+LA K
Sbjct:   50 QLVYVLLFFASGVRAAG----IGYYADTSNCNAAFQPC-----PAPLITPSSLPLLSRRQDLLESRRAHGRRKEFF-LTVARGKGFGKKPR--GDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRG---SSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKG-KEGESNP-AGGKVTLDDILAARGEEAKYLDIKSNPELAAK 282
The following BLAST results are available for this feature:
BLAST of NO03G03580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29858.11.300e-5354.40dnl-type zinc finger [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03580NO03G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03580.1NO03G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03580.1.cds1NO03G03580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03580.1.cds2NO03G03580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03580.1.cds3NO03G03580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03580.1 ID=NO03G03580.1|Name=NO03G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
ACAGGCACAATTTCCAACACTAGACGCAACGAGATGGAAACCCGCGGCAG
AATACACGTGACCCTCCAATCCCTTGTTGTCCTTTTGCTGCTTCTCGCAG
CAGCAACGACGCATGGCTTCTATCATCCCATAGGTCCCACTTTCATATCG
AGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGGCGATCCCTGTTGCCCGC
ATCAACACTGTTATTCGCCCCGCTGCCACCGCATCAGCGCCAGTACGACC
ATCTAGAAGGGCGGCGATGGCAGCTCTTGCCATTGGCGGCGGCGGGCGGC
AAAGGCTTCGGGAAAAAACCAAACAAGGAGGGAGGAGGAGAGAGTAGCAA
ACAACAGCCTATGCAGCAGGGAACTGGCAAGGCGGACAAAGGCCCTGACA
TCATCCGCCCAACCTTCAGTCAGCGAGACCGTAGAGAAGAAGCCGCCAAG
CCTGCCGCAGCTCCCAACATTGCCACTGCGTCCTCCTCCTCCTTGCCCCC
CCGGAAATTTCAAATGCTCTATACGTGCAACATCTGCGAAGGCCGAAACC
TAATTCAAGTGGACCGTATTGCATTTACCGAGGGGATTGTTGTGGCCCGT
TGCAAACACTGTGATGCCAAACATTTGGTCGCAGATAATTTAAGTAAGCT
GGACTTTGGGGCCGTTCTAGGAAAGGGCGCCAAGGATGGCGAGGCTCCTC
CAACGGGTGGTGGGAAAGTGACGCTGGAGGATCTGTTGGCGGCGAGTGGA
CAGGAGGCCAAGTATCTCGACATAAAGAATAATCCGCAGCTAGCTAAAAA
GTATGATTTGGTGGTCTTGGAGGATGGGACGGTGGAGCTGGCGCCCAAGG
AGAAGAGTGAGGAGTAGACTGCGGGAGGGAGGAAAGGAGGGAAGAGGAAA
TTATACATAAAAATGTGTTTTGGTTTGTCGGTACTTTGGCGCAGTCGGGC
CAGGAAATGAAAGAAGAAAGAAATCGAAAATGATAATA
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protein sequence of NO03G03580.1

>NO03G03580.1-protein ID=NO03G03580.1-protein|Name=NO03G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
METRGRIHVTLQSLVVLLLLLAAATTHGFYHPIGPTFISSRRRGAFQPCR
RSLLPASTLLFAPLPPHQRQYDHLEGRRWQLLPLAAAGGKGFGKKPNKEG
GGESSKQQPMQQGTGKADKGPDIIRPTFSQRDRREEAAKPAAAPNIATAS
SSSLPPRKFQMLYTCNICEGRNLIQVDRIAFTEGIVVARCKHCDAKHLVA
DNLSKLDFGAVLGKGAKDGEAPPTGGGKVTLEDLLAASGQEAKYLDIKNN
PQLAKKYDLVVLEDGTVELAPKEKSEE*
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mRNA from alignment at chr3:1065537..1066674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03580.1 ID=NO03G03580.1|Name=NO03G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp|location=Sequence derived from alignment at chr3:1065537..1066674+ (Nannochloropsis oceanica)
ACAGGCACAATTTCCAACACTAGACGCAACGAGATGGAAACCCGCGGCAG
AATACACGTGACCCTCCAATCCCTTGTTGTCCTTTTGCTGCTTCTCGCAG
CAGCAACGACGCATGGCTTCTATCATCCCATAGGTACGTCACTCCTCTAA
ATACGCGCACATACGATTTTGGTGCACTCACTTCCGCTCCACCCCACAGG
TCCCACTTTCATATCGAGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGGC
GATCCCTGTTGCCCGCATCAACACTGTTATTCGCCCCGCTGCCACCGCAT
CAGCGCCAGTACGACCATCTAGAAGGGCGGCGATGGCAGCTCTTGCCATT
GGCGGCGGCGGGCGGCAAAGGCTTCGGGAAAAAACCAAACAAGGAGGGAG
GAGGAGAGAGTAGCAAACAACAGCCTATGCAGCAGGGAACTGGCAAGGTG
GGAAGCTCGACGACCTGATCGGGCAAAGAAGCGCAACCTCATGTTCTAAC
TTCTCCCACACATCTCCTCCCACAAACAAAGGCGGACAAAGGCCCTGACA
TCATCCGCCCAACCTTCAGTCAGCGAGACCGTAGAGAAGAAGCCGCCAAG
CCTGCCGCAGCTCCCAACATTGCCACTGCGTCCTCCTCCTCCTTGCCCCC
CCGGAAATTTCAAATGCTCTATACGTGCAACATCTGCGAAGGCCGAAACC
TAATTCAAGTGGACCGTATTGCATTTACCGAGGGGATTGTTGTGGCCCGT
TGCAAACACTGTGATGCCAAACATTTGGTCGCAGATAATTTAAGTAAGCT
GGACTTTGGGGCCGTTCTAGGAAAGGGCGCCAAGGATGGCGAGGCTCCTC
CAACGGGTGGTGGGAAAGTGACGCTGGAGGATCTGTTGGCGGCGAGTGGA
CAGGAGGCCAAGTATCTCGACATAAAGAATAATCCGCAGCTAGCTAAAAA
GTATGATTTGGTGGTCTTGGAGGATGGGACGGTGGAGCTGGCGCCCAAGG
AGAAGAGTGAGGAGTAGACTGCGGGAGGGAGGAAAGGAGGGAAGAGGAAA
TTATACATAAAAATGTGTTTTGGTTTGTCGGTACTTTGGCGCAGTCGGGC
CAGGAAATGAAAGAAGAAAGAAATCGAAAATGATAATA
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Coding sequence (CDS) from alignment at chr3:1065537..1066674+

>NO03G03580.1 ID=NO03G03580.1|Name=NO03G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr3:1065537..1066674+ (Nannochloropsis oceanica)
ATGGAAACCCGCGGCAGAATACACGTGACCCTCCAATCCCTTGTTGTCCT
TTTGCTGCTTCTCGCAGCAGCAACGACGCATGGCTTCTATCATCCCATAG
GTCCCACTTTCATATCGAGCAGGAGGAGAGGCGCCTTTCAACCTTGCAGG
CGATCCCTGTTGCCCGCATCAACACTGTTATTCGCCCCGCTGCCACCGCA
TCAGCGCCAGTACGACCATCTAGAAGGGCGGCGATGGCAGCTCTTGCCAT
TGGCGGCGGCGGGCGGCAAAGGCTTCGGGAAAAAACCAAACAAGGAGGGA
GGAGGAGAGAGTAGCAAACAACAGCCTATGCAGCAGGGAACTGGCAAGGC
GGACAAAGGCCCTGACATCATCCGCCCAACCTTCAGTCAGCGAGACCGTA
GAGAAGAAGCCGCCAAGCCTGCCGCAGCTCCCAACATTGCCACTGCGTCC
TCCTCCTCCTTGCCCCCCCGGAAATTTCAAATGCTCTATACGTGCAACAT
CTGCGAAGGCCGAAACCTAATTCAAGTGGACCGTATTGCATTTACCGAGG
GGATTGTTGTGGCCCGTTGCAAACACTGTGATGCCAAACATTTGGTCGCA
GATAATTTAAGTAAGCTGGACTTTGGGGCCGTTCTAGGAAAGGGCGCCAA
GGATGGCGAGGCTCCTCCAACGGGTGGTGGGAAAGTGACGCTGGAGGATC
TGTTGGCGGCGAGTGGACAGGAGGCCAAGTATCTCGACATAAAGAATAAT
CCGCAGCTAGCTAAAAAGTATGATTTGGTGGTCTTGGAGGATGGGACGGT
GGAGCTGGCGCCCAAGGAGAAGAGTGAGGAGTAG
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Synonyms
Publications