NO03G03390, NO03G03390 (gene) Nannochloropsis oceanica

Overview
NameNO03G03390
Unique NameNO03G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1121
Alignment locationchr3:1015620..1016740 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1015620..1016740 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006450regulation of translational fidelity
Vocabulary: INTERPRO
TermDefinition
IPR036113Asp/Glu-ADT_sf_sub_c
IPR003837Asp/Glu-ADT_csu
Homology
The following BLAST results are available for this feature:
BLAST of NO03G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005559NSK005559Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03390.1NO03G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|10216gene_1534Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03390.1NO03G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03390 ID=NO03G03390|Name=NO03G03390|organism=Nannochloropsis oceanica|type=gene|length=1121bp
ATGAGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAG
AGGCATCGTGCGACTGAGgtacgttcgttgaattcaccgtcatgtagtgg
catgtgtgtgtatggcgctttccattccttgtcctctcctcagttatgtt
gcccctcatctcctctcaccttcacccaattgtgcagGACACTTGTACCC
CCGCATTCTCGAGCCATCACCAGCAAGCCCTACCTATGCAGAAATCAAGA
CGATAGCAGCAGTAGCGGTCACAATAGCCCGTTGGTGCCGCCATCCACCT
GGTCCCTCCACGATTTGGGATTGCTGCACAAGGATGCAGTCGCGGGGGCA
GGGAGCGACGCCTTGAACGAAGACGAGgtagggagatcagaagggggagg
cattttgcgtctgaagcaattgttgttctcgccaataaaaggattcagaa
agttgttgggaatgggtggtgtgtgtacataggttccaatatatgcaggc
gctgagtccgcacgttgcatgtctccgttcaacttatttttctttatttt
cccccttgctcacgcatatgataatggtcagCTATCACGGCTAGCTGGAT
ATGCACATTTGGATTTGGACGGGGTGAACGTCGATCGGGAGTCCTTGCAG
CGGGACCTTGGGGCCATTATCAATTGCATGACATTGCTGCAGgtctgtct
gttactgctctctctttaattgagtgaattcgggacgagttgaggaccat
atacttcagaaacaaggtcaaggtcattcaaatctctcatactcataata
ttttgtcaaacgtagACGGCGGACCTAAGTGACGTGAGCAAGGAGGAGAT
GTATGCGCCGCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAAGATG
TGGTCACGGAAGGAGgtgagattgtagggaatcggaggaagagagcaata
ttttgggtgcttaaacatcttcagtcatttttgtcacatcatactcccac
atctatatacttcgcccgcacatctctgattgcagGACTGGACAAGGAGG
ATCAGGTGCTGGCTAATACCAAGGAGACAGCCCATAATCAGTTTGTCGTC
CCGCTCGTCAACTGCAAGTGA
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protein sequence of NO03G03390.1

>NO03G03390.1-protein ID=NO03G03390.1-protein|Name=NO03G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MRRIRLAWNVSSHSMRRGIVRLRTLVPPHSRAITSKPYLCRNQDDSSSSG
HNSPLVPPSTWSLHDLGLLHKDAVAGAGSDALNEDELSRLAGYAHLDLDG
VNVDRESLQRDLGAIINCMTLLQTADLSDVSKEEMYAPPEYAQASARLRK
DVVTEGGLDKEDQVLANTKETAHNQFVVPLVNCK*
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Synonyms
Publications