NO03G03390.1, NO03G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03390.1
Unique NameNO03G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length555
Alignment locationchr3:1015620..1016740 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1015620..1016740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03390NO03G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03390.1NO03G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03390.1.cds1NO03G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03390.1.cds2NO03G03390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03390.1.cds3NO03G03390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03390.1.cds4NO03G03390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03390.1.cds5NO03G03390.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03390.1 ID=NO03G03390.1|Name=NO03G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
ATGAGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAG
AGGCATCGTGCGACTGAGGACACTTGTACCCCCGCATTCTCGAGCCATCA
CCAGCAAGCCCTACCTATGCAGAAATCAAGACGATAGCAGCAGTAGCGGT
CACAATAGCCCGTTGGTGCCGCCATCCACCTGGTCCCTCCACGATTTGGG
ATTGCTGCACAAGGATGCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACG
AAGACGAGCTATCACGGCTAGCTGGATATGCACATTTGGATTTGGACGGG
GTGAACGTCGATCGGGAGTCCTTGCAGCGGGACCTTGGGGCCATTATCAA
TTGCATGACATTGCTGCAGACGGCGGACCTAAGTGACGTGAGCAAGGAGG
AGATGTATGCGCCGCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAA
GATGTGGTCACGGAAGGAGGACTGGACAAGGAGGATCAGGTGCTGGCTAA
TACCAAGGAGACAGCCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGCA
AGTGA
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protein sequence of NO03G03390.1

>NO03G03390.1-protein ID=NO03G03390.1-protein|Name=NO03G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MRRIRLAWNVSSHSMRRGIVRLRTLVPPHSRAITSKPYLCRNQDDSSSSG
HNSPLVPPSTWSLHDLGLLHKDAVAGAGSDALNEDELSRLAGYAHLDLDG
VNVDRESLQRDLGAIINCMTLLQTADLSDVSKEEMYAPPEYAQASARLRK
DVVTEGGLDKEDQVLANTKETAHNQFVVPLVNCK*
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mRNA from alignment at chr3:1015620..1016740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03390.1 ID=NO03G03390.1|Name=NO03G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at chr3:1015620..1016740- (Nannochloropsis oceanica)
ATGAGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAG
AGGCATCGTGCGACTGAGGTACGTTCGTTGAATTCACCGTCATGTAGTGG
CATGTGTGTGTATGGCGCTTTCCATTCCTTGTCCTCTCCTCAGTTATGTT
GCCCCTCATCTCCTCTCACCTTCACCCAATTGTGCAGGACACTTGTACCC
CCGCATTCTCGAGCCATCACCAGCAAGCCCTACCTATGCAGAAATCAAGA
CGATAGCAGCAGTAGCGGTCACAATAGCCCGTTGGTGCCGCCATCCACCT
GGTCCCTCCACGATTTGGGATTGCTGCACAAGGATGCAGTCGCGGGGGCA
GGGAGCGACGCCTTGAACGAAGACGAGGTAGGGAGATCAGAAGGGGGAGG
CATTTTGCGTCTGAAGCAATTGTTGTTCTCGCCAATAAAAGGATTCAGAA
AGTTGTTGGGAATGGGTGGTGTGTGTACATAGGTTCCAATATATGCAGGC
GCTGAGTCCGCACGTTGCATGTCTCCGTTCAACTTATTTTTCTTTATTTT
CCCCCTTGCTCACGCATATGATAATGGTCAGCTATCACGGCTAGCTGGAT
ATGCACATTTGGATTTGGACGGGGTGAACGTCGATCGGGAGTCCTTGCAG
CGGGACCTTGGGGCCATTATCAATTGCATGACATTGCTGCAGGTCTGTCT
GTTACTGCTCTCTCTTTAATTGAGTGAATTCGGGACGAGTTGAGGACCAT
ATACTTCAGAAACAAGGTCAAGGTCATTCAAATCTCTCATACTCATAATA
TTTTGTCAAACGTAGACGGCGGACCTAAGTGACGTGAGCAAGGAGGAGAT
GTATGCGCCGCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAAGATG
TGGTCACGGAAGGAGGTGAGATTGTAGGGAATCGGAGGAAGAGAGCAATA
TTTTGGGTGCTTAAACATCTTCAGTCATTTTTGTCACATCATACTCCCAC
ATCTATATACTTCGCCCGCACATCTCTGATTGCAGGACTGGACAAGGAGG
ATCAGGTGCTGGCTAATACCAAGGAGACAGCCCATAATCAGTTTGTCGTC
CCGCTCGTCAACTGCAAGTGA
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Coding sequence (CDS) from alignment at chr3:1015620..1016740-

>NO03G03390.1 ID=NO03G03390.1|Name=NO03G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr3:1015620..1016740- (Nannochloropsis oceanica)
ATGAGACGGATTCGCCTAGCCTGGAATGTCTCATCTCACAGCATGAGGAG
AGGCATCGTGCGACTGAGGACACTTGTACCCCCGCATTCTCGAGCCATCA
CCAGCAAGCCCTACCTATGCAGAAATCAAGACGATAGCAGCAGTAGCGGT
CACAATAGCCCGTTGGTGCCGCCATCCACCTGGTCCCTCCACGATTTGGG
ATTGCTGCACAAGGATGCAGTCGCGGGGGCAGGGAGCGACGCCTTGAACG
AAGACGAGCTATCACGGCTAGCTGGATATGCACATTTGGATTTGGACGGG
GTGAACGTCGATCGGGAGTCCTTGCAGCGGGACCTTGGGGCCATTATCAA
TTGCATGACATTGCTGCAGACGGCGGACCTAAGTGACGTGAGCAAGGAGG
AGATGTATGCGCCGCCTGAATACGCCCAAGCATCGGCACGCCTAAGAAAA
GATGTGGTCACGGAAGGAGGACTGGACAAGGAGGATCAGGTGCTGGCTAA
TACCAAGGAGACAGCCCATAATCAGTTTGTCGTCCCGCTCGTCAACTGCA
AGTGA
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Synonyms
Publications