NO03G03220, NO03G03220 (gene) Nannochloropsis oceanica

Overview
NameNO03G03220
Unique NameNO03G03220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr3:957384..957929 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:957384..957929 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO03G03220 vs. NCBI_GenBank
Match: EWM29769.1 (hypothetical protein Naga_100022g20 [Nannochloropsis gaditana])

HSP 1 Score: 176.0 bits (445), Expect = 1.000e-40
Identity = 102/185 (55.14%), Postives = 123/185 (66.49%), Query Frame = 0 
Query:    3 IETPLPGLNEDE-----GIDVYDGDESELGSMEEAAAAAMANMAPEQKKFMESLQNIMVELSEPCQKEFATLIQA-GGMDKASEMCQAEISAAAAKVPDFARQQEAAVQAAADKARRANGRQPDPNAGKYLAVMLVLAFLGVVAYIVWVNRKLKEAGMMDRRRKQLSXXXXXXXXXXXXXXKKIM 182
            +ETPLPG+ E +      IDV+DGD    GS EE  AA  AN +PE  +FM+SL  IM ELSEPCQKEF  +++  G M + SE CQ E+S A+A VPD  R +EAAVQ AAD+ RRANGRQPDPN GK+LAVML + F+ +V YIVWVNRKLKEAG+  +R K LS              KKIM
Sbjct:    1 METPLPGMGEMKTQEVGDIDVFDGDNGLHGSEEEEIAAMRANASPEANRFMDSLGKIMKELSEPCQKEFGHILETQGKMVQLSEACQVEVSTASAAVPDIVRHKEAAVQEAADRVRRANGRQPDPNTGKHLAVMLFILFVCIVGYIVWVNRKLKEAGLTGKRPKHLSKKKMEKEMMRKQQAKKIM 185
The following BLAST results are available for this feature:
BLAST of NO03G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29769.11.000e-4055.14hypothetical protein Naga_100022g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005572NSK005572Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03220.1NO03G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572490gene_1516Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g20gene872Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03220.1NO03G03220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03220 ID=NO03G03220|Name=NO03G03220|organism=Nannochloropsis oceanica|type=gene|length=546bp
ATGGAGATAGAAACCCCCCTACCGGGACTGAACGAGGACGAAGGCATTGA
TGTCTACGACGGCGATGAGTCCGAGTTAGGAAGCATGGAGGAAGCAGCCG
CGGCAGCCATGGCCAACATGGCACCGGAGCAAAAGAAATTCATGGAGTCC
CTTCAGAACATCATGGTGGAGCTTTCCGAGCCTTGCCAGAAAGAATTCGC
GACGTTGATTCAAGCCGGCGGTATGGACAAGGCAAGCGAGATGTGTCAGG
CGGAAATTTCGGCCGCTGCTGCCAAAGTGCCCGACTTTGCCCGTCAGCAG
GAGGCGGCTGTGCAAGCTGCTGCGGATAAGGCTCGTCGTGCAAATGGCCG
TCAGCCCGATCCGAATGCTGGAAAGTATTTGGCGGTGATGCTGGTGTTGG
CGTTTCTGGGCGTTGTAGCTTATATTGTGTGGGTGAATAGGAAGTTAAAG
GAGGCGGGGATGATGGACAGGCGGCGAAAGCAGTTGTCGAAAAAGAAGTT
GGAGAAAGAAAAGATGCGGGAGCAGCAGAAGAAAAAGATTATGTAA
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protein sequence of NO03G03220.1

>NO03G03220.1-protein ID=NO03G03220.1-protein|Name=NO03G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MEIETPLPGLNEDEGIDVYDGDESELGSMEEAAAAAMANMAPEQKKFMES
LQNIMVELSEPCQKEFATLIQAGGMDKASEMCQAEISAAAAKVPDFARQQ
EAAVQAAADKARRANGRQPDPNAGKYLAVMLVLAFLGVVAYIVWVNRKLK
EAGMMDRRRKQLSKKKLEKEKMREQQKKKIM*
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Synonyms
Publications