NO03G03220.1, NO03G03220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03220.1
Unique NameNO03G03220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr3:957384..957929 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:957384..957929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03220.1 vs.
Match: EWM29769.1 (hypothetical protein Naga_100022g20 [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 5.400e-45
Identity = 112/185 (60.54%), Postives = 135/185 (72.97%), Query Frame = 0 
Query:    3 IETPLPGLNEDE-----GIDVYDGDESELGSMEEAAAAAMANMAPEQKKFMESLQNIMVELSEPCQKEFATLIQAGG-MDKASEMCQAEISAAAAKVPDFARQQEAAVQAAADKARRANGRQPDPNAGKYLAVMLVLAFLGVVAYIVWVNRKLKEAGMMDRRRKQLSKKKLEKEKMREQQKKKIM 182
            +ETPLPG+ E +      IDV+DGD    GS EE  AA  AN +PE  +FM+SL  IM ELSEPCQKEF  +++  G M + SE CQ E+S A+A VPD  R +EAAVQ AAD+ RRANGRQPDPN GK+LAVML + F+ +V YIVWVNRKLKEAG+  +R K LSKKK+EKE MR+QQ KKIM
Sbjct:    1 METPLPGMGEMKTQEVGDIDVFDGDNGLHGSEEEEIAAMRANASPEANRFMDSLGKIMKELSEPCQKEFGHILETQGKMVQLSEACQVEVSTASAAVPDIVRHKEAAVQEAADRVRRANGRQPDPNTGKHLAVMLFILFVCIVGYIVWVNRKLKEAGLTGKRPKHLSKKKMEKEMMRKQQAKKIM 185
The following BLAST results are available for this feature:
BLAST of NO03G03220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29769.15.400e-4560.54hypothetical protein Naga_100022g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03220NO03G03220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03220.1NO03G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03220.1.cds1NO03G03220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03220.1 ID=NO03G03220.1|Name=NO03G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
ATGGAGATAGAAACCCCCCTACCGGGACTGAACGAGGACGAAGGCATTGA
TGTCTACGACGGCGATGAGTCCGAGTTAGGAAGCATGGAGGAAGCAGCCG
CGGCAGCCATGGCCAACATGGCACCGGAGCAAAAGAAATTCATGGAGTCC
CTTCAGAACATCATGGTGGAGCTTTCCGAGCCTTGCCAGAAAGAATTCGC
GACGTTGATTCAAGCCGGCGGTATGGACAAGGCAAGCGAGATGTGTCAGG
CGGAAATTTCGGCCGCTGCTGCCAAAGTGCCCGACTTTGCCCGTCAGCAG
GAGGCGGCTGTGCAAGCTGCTGCGGATAAGGCTCGTCGTGCAAATGGCCG
TCAGCCCGATCCGAATGCTGGAAAGTATTTGGCGGTGATGCTGGTGTTGG
CGTTTCTGGGCGTTGTAGCTTATATTGTGTGGGTGAATAGGAAGTTAAAG
GAGGCGGGGATGATGGACAGGCGGCGAAAGCAGTTGTCGAAAAAGAAGTT
GGAGAAAGAAAAGATGCGGGAGCAGCAGAAGAAAAAGATTATGTAA
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protein sequence of NO03G03220.1

>NO03G03220.1-protein ID=NO03G03220.1-protein|Name=NO03G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MEIETPLPGLNEDEGIDVYDGDESELGSMEEAAAAAMANMAPEQKKFMES
LQNIMVELSEPCQKEFATLIQAGGMDKASEMCQAEISAAAAKVPDFARQQ
EAAVQAAADKARRANGRQPDPNAGKYLAVMLVLAFLGVVAYIVWVNRKLK
EAGMMDRRRKQLSKKKLEKEKMREQQKKKIM*
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mRNA from alignment at chr3:957384..957929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03220.1 ID=NO03G03220.1|Name=NO03G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp|location=Sequence derived from alignment at chr3:957384..957929- (Nannochloropsis oceanica)
ATGGAGATAGAAACCCCCCTACCGGGACTGAACGAGGACGAAGGCATTGA
TGTCTACGACGGCGATGAGTCCGAGTTAGGAAGCATGGAGGAAGCAGCCG
CGGCAGCCATGGCCAACATGGCACCGGAGCAAAAGAAATTCATGGAGTCC
CTTCAGAACATCATGGTGGAGCTTTCCGAGCCTTGCCAGAAAGAATTCGC
GACGTTGATTCAAGCCGGCGGTATGGACAAGGCAAGCGAGATGTGTCAGG
CGGAAATTTCGGCCGCTGCTGCCAAAGTGCCCGACTTTGCCCGTCAGCAG
GAGGCGGCTGTGCAAGCTGCTGCGGATAAGGCTCGTCGTGCAAATGGCCG
TCAGCCCGATCCGAATGCTGGAAAGTATTTGGCGGTGATGCTGGTGTTGG
CGTTTCTGGGCGTTGTAGCTTATATTGTGTGGGTGAATAGGAAGTTAAAG
GAGGCGGGGATGATGGACAGGCGGCGAAAGCAGTTGTCGAAAAAGAAGTT
GGAGAAAGAAAAGATGCGGGAGCAGCAGAAGAAAAAGATTATGTAA
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Coding sequence (CDS) from alignment at chr3:957384..957929-

>NO03G03220.1 ID=NO03G03220.1|Name=NO03G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr3:957384..957929- (Nannochloropsis oceanica)
ATGGAGATAGAAACCCCCCTACCGGGACTGAACGAGGACGAAGGCATTGA
TGTCTACGACGGCGATGAGTCCGAGTTAGGAAGCATGGAGGAAGCAGCCG
CGGCAGCCATGGCCAACATGGCACCGGAGCAAAAGAAATTCATGGAGTCC
CTTCAGAACATCATGGTGGAGCTTTCCGAGCCTTGCCAGAAAGAATTCGC
GACGTTGATTCAAGCCGGCGGTATGGACAAGGCAAGCGAGATGTGTCAGG
CGGAAATTTCGGCCGCTGCTGCCAAAGTGCCCGACTTTGCCCGTCAGCAG
GAGGCGGCTGTGCAAGCTGCTGCGGATAAGGCTCGTCGTGCAAATGGCCG
TCAGCCCGATCCGAATGCTGGAAAGTATTTGGCGGTGATGCTGGTGTTGG
CGTTTCTGGGCGTTGTAGCTTATATTGTGTGGGTGAATAGGAAGTTAAAG
GAGGCGGGGATGATGGACAGGCGGCGAAAGCAGTTGTCGAAAAAGAAGTT
GGAGAAAGAAAAGATGCGGGAGCAGCAGAAGAAAAAGATTATGTAA
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Synonyms
Publications