NO03G03180, NO03G03180 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03180
Unique Name	NO03G03180
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1539
Alignment location	chr3:948243..949781 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:948243..949781 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

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BLAST of NO03G03180 vs. NCBI_GenBank
Match: EWM29756.1 (hypothetical protein Naga_100022g29 [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 2.300e-12
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0

Query:  114 NTTGPFFDLRVFNVDEAMEKLHIQQQAAPLGFVWSREEKPDPMIDGAR 162
            N +GPFFD+RV++V+EAMEKLH+Q+ A PLGFVW+ EEKPDP IDG R
Sbjct:  131 NLSGPFFDVRVYSVEEAMEKLHLQRPAVPLGFVWAHEEKPDPSIDGPR 178

The following BLAST results are available for this feature:

BLAST of NO03G03180 vs. NCBI_GenBank

BLAST of NO03G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29756.1	2.300e-12	70.83	hypothetical protein Naga_100022g29 [Nannochlorops...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G03180.1	NO03G03180.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|9462	gene_1512	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G03180.1	NO03G03180.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G03180 ID=NO03G03180|Name=NO03G03180|organism=Nannochloropsis oceanica|type=gene|length=1539bp
CGTACTCGGCTGTCTGTGGGTCTGGGTTTGGATGCGTATGTGTGAGGGGG
CACGGCTGACTGACGACAGAGGGCGATCAGCAATGATTGGCGACCTTCAC
AATTTTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCT
TTTATCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTT
GCAGACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTC
GAAAGACTCAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTA
ACTTTTTACTGAAAGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCT
TCCTCGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACA
CAACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCG
GCGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTG
CCGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACG
TGCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTC
CTCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGT
CGTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAA
GCCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTT
CTTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACA
TCCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAA
CCGGACCCTATGATCGATGGTGCACGTATTGgtaagtgaaaaggcttgga
ggggtggcactgaggagatgggagaaggcagggctaaattatgcccagag
ctgtgacggactcatttgcttgttgttacctatacgttgcccagatttaa
actgcgacgtaataaatctgagagttcacaagctcaccatatccgcctcc
ccccaaaacaaaaatagCACCCGCCTCATCCCCCCCCCCATGGTGCTGGA
AGAGGAGATTACAACGGACAGCACGGGTGGAGAGGCCATGCAGCTCATTA
AACGGACATATCAACCTAGTTTGCTCAGGCGTAAGCGAGCCCATGGCTTT
TTGAGTCGTCTTAAAAACAGGGACGGACGGAAAATTCTTGCGCGACGACG
AGCGAAGAATCGTACGCGAATGGCAGTTTAATGGAGATTGCGAGGGAGGA
TATGTGTATATAGGTTTAGAGTAGACGTTGGGGAGAAAGAGGGAGAGGTG
GTGGGATGGATAGTAAAGGAGGCGAAACACATGCCGAGACATTGAAGGAT
CAAAAATAAAGTCATCTAGACGGATTGCAGAGGTAGAAGAGTAAAGCAAG
GGAAGAGGAAGAATATAACAAAAAGAACAAATTCTTTTTCACACATTCAT
TCATGAAATACATACGAAATGTTACGCGTGACAATCAAG

protein sequence of NO03G03180.1

>NO03G03180.1-protein ID=NO03G03180.1-protein|Name=NO03G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MTQHSVINAMMPFGAGMARRALVSTSRLVAGVACRAARQHVTPSFPCAAA
LTCSGQHQSSAMSSSSSSSSSSSGKFPHSSSSSPSSSSSTPASPPSGRAC
DEASSGSITLESNNTTGPFFDLRVFNVDEAMEKLHIQQQAAPLGFVWSRE
EKPDPMIDGARIAPASSPPPWCWKRRLQRTARVERPCSSLNGHINLVCSG
VSEPMAF*

Synonyms

Publications