NO03G03180.1, NO03G03180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03180.1
Unique NameNO03G03180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr3:948243..949781 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:948243..949781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03180.1 vs.
Match: EWM29756.1 (hypothetical protein Naga_100022g29 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 3.300e-22
Identity = 83/156 (53.21%), Postives = 103/156 (66.03%), Query Frame = 0 
Query:    9 AMMPFGAGMARRALVSTSRLVAGVACRAA--RQ-HVTPSFPCAAALTCSGQHQSSAMSSSSSSSSSSSGKFPHSSSSSPSSSSSTPASPPSGRACDEASSGSITLESNNTTGPFFDLRVFNVDEAMEKLHIQQQAAPLGFVWSREEKPDPMIDGAR 162
            AM+P G  MA +     SR+  G   R +  RQ H+ PS  C AA +   + ++SAMSSSSSSSSSS G  P SSS+ P+S    P SPPSG ACD AS       + N +GPFFD+RV++V+EAMEKLH+Q+ A PLGFVW+ EEKPDP IDG R
Sbjct:   28 AMVPKGTSMAHQLWALASRVARGSTWRGSTVRQGHLIPSSLCGAAFSNPLRPRNSAMSSSSSSSSSSGGS-PWSSSAPPAS----PPSPPSGEACDAASPRGGAAGAVNLSGPFFDVRVYSVEEAMEKLHLQRPAVPLGFVWAHEEKPDPSIDGPR 178
The following BLAST results are available for this feature:
BLAST of NO03G03180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29756.13.300e-2253.21hypothetical protein Naga_100022g29 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03180NO03G03180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03180.1NO03G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03180.1.cds1NO03G03180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03180.1.cds2NO03G03180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03180.1 ID=NO03G03180.1|Name=NO03G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp
CGTACTCGGCTGTCTGTGGGTCTGGGTTTGGATGCGTATGTGTGAGGGGG
CACGGCTGACTGACGACAGAGGGCGATCAGCAATGATTGGCGACCTTCAC
AATTTTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCT
TTTATCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTT
GCAGACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTC
GAAAGACTCAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTA
ACTTTTTACTGAAAGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCT
TCCTCGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACA
CAACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCG
GCGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTG
CCGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACG
TGCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTC
CTCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGT
CGTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAA
GCCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTT
CTTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACA
TCCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAA
CCGGACCCTATGATCGATGGTGCACGTATTGCACCCGCCTCATCCCCCCC
CCCATGGTGCTGGAAGAGGAGATTACAACGGACAGCACGGGTGGAGAGGC
CATGCAGCTCATTAAACGGACATATCAACCTAGTTTGCTCAGGCGTAAGC
GAGCCCATGGCTTTTTGAGTCGTCTTAAAAACAGGGACGGACGGAAAATT
CTTGCGCGACGACGAGCGAAGAATCGTACGCGAATGGCAGTTTAATGGAG
ATTGCGAGGGAGGATATGTGTATATAGGTTTAGAGTAGACGTTGGGGAGA
AAGAGGGAGAGGTGGTGGGATGGATAGTAAAGGAGGCGAAACACATGCCG
AGACATTGAAGGATCAAAAATAAAGTCATCTAGACGGATTGCAGAGGTAG
AAGAGTAAAGCAAGGGAAGAGGAAGAATATAACAAAAAGAACAAATTCTT
TTTCACACATTCATTCATGAAATACATACGAAATGTTACGCGTGACAATC
AAG
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protein sequence of NO03G03180.1

>NO03G03180.1-protein ID=NO03G03180.1-protein|Name=NO03G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MTQHSVINAMMPFGAGMARRALVSTSRLVAGVACRAARQHVTPSFPCAAA
LTCSGQHQSSAMSSSSSSSSSSSGKFPHSSSSSPSSSSSTPASPPSGRAC
DEASSGSITLESNNTTGPFFDLRVFNVDEAMEKLHIQQQAAPLGFVWSRE
EKPDPMIDGARIAPASSPPPWCWKRRLQRTARVERPCSSLNGHINLVCSG
VSEPMAF*
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mRNA from alignment at chr3:948243..949781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03180.1 ID=NO03G03180.1|Name=NO03G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp|location=Sequence derived from alignment at chr3:948243..949781- (Nannochloropsis oceanica)
CGTACTCGGCTGTCTGTGGGTCTGGGTTTGGATGCGTATGTGTGAGGGGG
CACGGCTGACTGACGACAGAGGGCGATCAGCAATGATTGGCGACCTTCAC
AATTTTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCT
TTTATCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTT
GCAGACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTC
GAAAGACTCAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTA
ACTTTTTACTGAAAGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCT
TCCTCGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACA
CAACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCG
GCGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTG
CCGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACG
TGCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTC
CTCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGT
CGTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAA
GCCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTT
CTTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACA
TCCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAA
CCGGACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGA
GGGGTGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAG
CTGTGACGGACTCATTTGCTTGTTGTTACCTATACGTTGCCCAGATTTAA
ACTGCGACGTAATAAATCTGAGAGTTCACAAGCTCACCATATCCGCCTCC
CCCCAAAACAAAAATAGCACCCGCCTCATCCCCCCCCCCATGGTGCTGGA
AGAGGAGATTACAACGGACAGCACGGGTGGAGAGGCCATGCAGCTCATTA
AACGGACATATCAACCTAGTTTGCTCAGGCGTAAGCGAGCCCATGGCTTT
TTGAGTCGTCTTAAAAACAGGGACGGACGGAAAATTCTTGCGCGACGACG
AGCGAAGAATCGTACGCGAATGGCAGTTTAATGGAGATTGCGAGGGAGGA
TATGTGTATATAGGTTTAGAGTAGACGTTGGGGAGAAAGAGGGAGAGGTG
GTGGGATGGATAGTAAAGGAGGCGAAACACATGCCGAGACATTGAAGGAT
CAAAAATAAAGTCATCTAGACGGATTGCAGAGGTAGAAGAGTAAAGCAAG
GGAAGAGGAAGAATATAACAAAAAGAACAAATTCTTTTTCACACATTCAT
TCATGAAATACATACGAAATGTTACGCGTGACAATCAAG
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Coding sequence (CDS) from alignment at chr3:948243..949781-

>NO03G03180.1 ID=NO03G03180.1|Name=NO03G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr3:948243..949781- (Nannochloropsis oceanica)
ATGACACAACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCAT
GGCCCGGCGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGT
GCCGTGCCGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCT
TTAACGTGCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATC
CTCGTCCTCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCC
CGTCGTCGTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGC
GATGAAGCCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGG
GCCCTTCTTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGC
TTCACATCCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAA
GAGAAACCGGACCCTATGATCGATGGTGCACGTATTGCACCCGCCTCATC
CCCCCCCCCATGGTGCTGGAAGAGGAGATTACAACGGACAGCACGGGTGG
AGAGGCCATGCAGCTCATTAAACGGACATATCAACCTAGTTTGCTCAGGC
GTAAGCGAGCCCATGGCTTTTTGA
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Synonyms
Publications