NO03G03160, NO03G03160 (gene) Nannochloropsis oceanica

Overview
NameNO03G03160
Unique NameNO03G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length746
Alignment locationchr3:942252..942997 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c oxidase biogenesis protein cmc1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:942252..942997 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_005853405.1 (cytochrome c oxidase biogenesis protein cmc1-like protein [Nannochloropsis gaditana CCMP526] >EKU22954.1 cytochrome c oxidase biogenesis protein cmc1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 117.5 bits (293), Expect = 2.100e-23
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 0 
Query:   15 VIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKE 85
            VIDALL CH++HP AKFWG CNE+KWALDKCFR+EKE RR+ NFA A RDDGAWS+IV QKEA+++A+KE
Sbjct:    2 VIDALLLCHQEHPWAKFWGECNEQKWALDKCFRMEKEQRRRANFAVASRDDGAWSQIVKQKEAELRAKKE 71
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_009036364.1 (hypothetical protein AURANDRAFT_25383 [Aureococcus anophagefferens] >EGB09260.1 hypothetical protein AURANDRAFT_25383 [Aureococcus anophagefferens])

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-15
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSK 71
            MHPPL+RPHP C  ++D L+ CH ++P  KFWGACN+EK A+D CF+ EKE++R+ NF K    +  W K
Sbjct:    1 MHPPLYRPHPKCAALVDLLVKCHDENPYGKFWGACNDEKAAMDWCFKEEKEEKRRANFEKTRSFNEEWRK 70
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: CCA22679.1 (unnamed protein product putative [Albugo laibachii Nc14])

HSP 1 Score: 88.6 bits (218), Expect = 1.000e-14
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKA 62
            MHPPL RPHP CQ VI  L  CH ++P AKF GACNE K ALD CFR+EKE++RKQN  K+
Sbjct:    1 MHPPLDRPHPLCQQVIKNLKQCHTENPRAKFLGACNEAKRALDDCFRMEKEEKRKQNLVKS 61
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: GAX94696.1 (Hypothetical protein PINS_002589 [Pythium insidiosum])

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-14
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ 87
            MHP L R HPDCQ VI+AL++CH Q+P+AKF+GAC+E K ALDKCFR EK  RR +N  +A   D      V QK  + +  +E++
Sbjct:    1 MHPSLDRDHPDCQDVIEALVTCHEQNPMAKFFGACSEAKVALDKCFRTEKIKRRTENLERARASDA----YVRQKMKEHRERREAE 82
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: GBG29975.1 (COX assembly mitochondrial protein 2 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 84.3 bits (207), Expect = 2.000e-13
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQA 82
            MHPPL RPHP CQ VIDAL  CH  +P  KF G+CNE K ALD+CFR EKE  RK N  +A        + +A+  A+  A
Sbjct:    1 MHPPLDRPHPYCQDVIDALRKCHEDNPYMKFLGSCNEPKAALDQCFRAEKEVMRKANAERARESRRRAEERMARDRAEASA 81
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_009530838.1 (hypothetical protein PHYSODRAFT_547087 [Phytophthora sojae] >EGZ13409.1 hypothetical protein PHYSODRAFT_547087 [Phytophthora sojae])

HSP 1 Score: 83.6 bits (205), Expect = 3.400e-13
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ 87
            MH PL RPHPDCQ  I ALL CH ++P AKF+GAC + K ALD CFR EK   R +NF +A   D    + + ++  +V AE++++
Sbjct:    1 MHTPLDRPHPDCQAEIKALLECHEENPYAKFFGACGDVKTALDWCFREEKVRIRSENFQRAKASDAYVRQKMQERRDRVAAEQKAK 86
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: POM70309.1 (Hypothetical protein PHPALM_13268 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 82.8 bits (203), Expect = 5.800e-13
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ 87
            MH PL RPHPDCQ  I ALL CH  +P AKF+GAC + K ALD CFR EK   R +NF  A   D    + + ++  +V AE++++
Sbjct:    1 MHTPLDRPHPDCQTEIKALLECHESNPYAKFFGACGDVKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERRDRVAAEEKAR 86
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_008911220.1 (hypothetical protein PPTG_15681 [Phytophthora parasitica INRA-310] >ETI38031.1 hypothetical protein F443_16129 [Phytophthora parasitica P1569] >ETK78245.1 hypothetical protein L915_15675 [Phytophthora parasitica] >ETL31680.1 hypothetical protein L916_15570 [Phytophthora parasitica] >ETL84910.1 hypothetical protein L917_15393 [Phytophthora parasitica] >ETM38093.1 hypothetical protein L914_15525 [Phytophthora parasitica] >ETN03447.1 hypothetical protein PPTG_15681 [Phytophthora parasitica INRA-310] >ETO66800.1 hypothetical protein F444_16114 [Phytophthora parasitica P1976] >ETP07921.1 hypothetical protein F441_15958 [Phytophthora parasitica CJ01A1] >ETP35951.1 hypothetical protein F442_15982 [Phytophthora parasitica P10297])

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-13
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ 87
            MH PL RPHPDCQ  I ALL CH  +P AKF+GAC E K ALD CF+ EK   R +NF  A   D    + + ++  +V AE++++
Sbjct:    1 MHAPLDRPHPDCQAEIKALLECHENNPYAKFFGACGEVKTALDHCFKNEKIRMRSENFKHAKASDAYVRQKMQERRDRVAAEEKAR 86
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: CCI10540.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-13
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKA 62
            MHPPL RPHP CQ VI  L  CH  +P  KF GACNE K ALD+CFR EKE++R+QN  ++
Sbjct:    1 MHPPLDRPHPLCQKVIQNLKKCHADNPRRKFIGACNEAKRALDECFRKEKEEKRRQNLRRS 61
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: OWZ02784.1 (hypothetical protein PHMEG_00025590 [Phytophthora megakarya])

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-13
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEK 84
            MH PL RPHPDCQ  I ALL CH ++P AKF+GAC E K ALD CFR EK   R +NF  A   D    + + ++  +V  EK
Sbjct:    1 MHTPLDRPHPDCQTEIKALLECHDENPYAKFFGACGEIKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERRDRVANEK 83
The following BLAST results are available for this feature:
BLAST of NO03G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853405.12.100e-2374.29cytochrome c oxidase biogenesis protein cmc1-like ... [more]
XP_009036364.11.200e-1552.86hypothetical protein AURANDRAFT_25383 [Aureococcus... [more]
CCA22679.11.000e-1465.57unnamed protein product putative [Albugo laibachii... [more]
GAX94696.11.400e-1451.16Hypothetical protein PINS_002589 [Pythium insidios... [more]
GBG29975.12.000e-1351.85COX assembly mitochondrial protein 2 [Aurantiochyt... [more]
XP_009530838.13.400e-1347.67hypothetical protein PHYSODRAFT_547087 [Phytophtho... [more]
POM70309.15.800e-1347.67Hypothetical protein PHPALM_13268 [Phytophthora pa... [more]
XP_008911220.17.500e-1347.67hypothetical protein PPTG_15681 [Phytophthora para... [more]
CCI10540.17.500e-1360.66unnamed protein product [Albugo candida][more]
OWZ02784.17.500e-1350.60hypothetical protein PHMEG_00025590 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03160.1NO03G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572466gene_1509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03160.1NO03G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03160 ID=NO03G03160|Name=NO03G03160|organism=Nannochloropsis oceanica|type=gene|length=746bp
ATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCACgtaagttt
gtttccgtttgtacatggggaggaaggcaaatgtttaatcagtacccacc
cgtaaagtggagaagagaaggggaagagaggttggggcgagctattgaga
acgcagggagaaaggaacgcaaatccatttgactcgtgtgctgtcagaac
gaaaaccccgtcctttggcaacctcccctccccaaggcgtgctttcgtcc
cagcccccccctcaagcagaccgcacccttcacattgtgaatgaaagcat
tgaagcatgcgtgcagcaaagtacctgattttcattgtaatcctcactgt
cctcatgcagGTGATTGACGCTCTGCTTTCGTGCCACCGTCAGCATCCCT
TGGCCAAGTTTTGGGGGGCGTGCAACGAGGAGAAGTGGGCATTGGACAAA
TGCTTTCGGgtatgtacttcagccaagacacctttgtaagagttttgaca
taaactggaaagttcgcaatgcatcatacctgcgtgatggggttcttcgc
gtttttgacctcttacattgtttttccccctctcatctcctcgtctttca
cacaatcccattcctcgataattaagGTGGAGAAGGAAGACCGCCGGAAG
CAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGCATGGTCCAAGATTGT
GGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGGAAAGCCAATGA
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protein sequence of NO03G03160.1

>NO03G03160.1-protein ID=NO03G03160.1-protein|Name=NO03G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEK
EDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ*
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Synonyms
Publications