NO03G03160.1, NO03G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03160.1
Unique NameNO03G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length261
Alignment locationchr3:942252..942997 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:942252..942997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03160.1 vs.
Match: XP_005853405.1 (cytochrome c oxidase biogenesis protein cmc1-like protein [Nannochloropsis gaditana CCMP526]; EKU22954.1 cytochrome c oxidase biogenesis protein cmc1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 117.5 bits (293), Expect = 2.100e-23
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 0
Query:   15 VIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKE 85
            VIDALL CH++HP AKFWG CNE+KWALDKCFR+EKE RR+ NFA A RDDGAWS+IV QKEA+++A+KE
Sbjct:    2 VIDALLLCHQEHPWAKFWGECNEQKWALDKCFRMEKEQRRRANFAVASRDDGAWSQIVKQKEAELRAKKE 71          
The following BLAST results are available for this feature:
BLAST of NO03G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853405.12.100e-2374.29cytochrome c oxidase biogenesis protein cmc1-like ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03160NO03G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03160.1NO03G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03160.1.cds1NO03G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03160.1.cds2NO03G03160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03160.1.cds3NO03G03160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03160.1 ID=NO03G03160.1|Name=NO03G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=261bp
ATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCACGTGATTGA
CGCTCTGCTTTCGTGCCACCGTCAGCATCCCTTGGCCAAGTTTTGGGGGG
CGTGCAACGAGGAGAAGTGGGCATTGGACAAATGCTTTCGGGTGGAGAAG
GAAGACCGCCGGAAGCAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGC
ATGGTCCAAGATTGTGGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGG
AAAGCCAATGA
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protein sequence of NO03G03160.1

>NO03G03160.1-protein ID=NO03G03160.1-protein|Name=NO03G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEK
EDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ*
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mRNA from alignment at chr3:942252..942997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03160.1 ID=NO03G03160.1|Name=NO03G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=746bp|location=Sequence derived from alignment at chr3:942252..942997+ (Nannochloropsis oceanica)
ATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCACGTAAGTTT GTTTCCGTTTGTACATGGGGAGGAAGGCAAATGTTTAATCAGTACCCACC CGTAAAGTGGAGAAGAGAAGGGGAAGAGAGGTTGGGGCGAGCTATTGAGA ACGCAGGGAGAAAGGAACGCAAATCCATTTGACTCGTGTGCTGTCAGAAC GAAAACCCCGTCCTTTGGCAACCTCCCCTCCCCAAGGCGTGCTTTCGTCC CAGCCCCCCCCTCAAGCAGACCGCACCCTTCACATTGTGAATGAAAGCAT TGAAGCATGCGTGCAGCAAAGTACCTGATTTTCATTGTAATCCTCACTGT CCTCATGCAGGTGATTGACGCTCTGCTTTCGTGCCACCGTCAGCATCCCT TGGCCAAGTTTTGGGGGGCGTGCAACGAGGAGAAGTGGGCATTGGACAAA TGCTTTCGGGTATGTACTTCAGCCAAGACACCTTTGTAAGAGTTTTGACA TAAACTGGAAAGTTCGCAATGCATCATACCTGCGTGATGGGGTTCTTCGC GTTTTTGACCTCTTACATTGTTTTTCCCCCTCTCATCTCCTCGTCTTTCA CACAATCCCATTCCTCGATAATTAAGGTGGAGAAGGAAGACCGCCGGAAG CAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGCATGGTCCAAGATTGT GGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGGAAAGCCAATGA
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Coding sequence (CDS) from alignment at chr3:942252..942997+

>NO03G03160.1 ID=NO03G03160.1|Name=NO03G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at chr3:942252..942997+ (Nannochloropsis oceanica)
ATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCACGTGATTGA
CGCTCTGCTTTCGTGCCACCGTCAGCATCCCTTGGCCAAGTTTTGGGGGG
CGTGCAACGAGGAGAAGTGGGCATTGGACAAATGCTTTCGGGTGGAGAAG
GAAGACCGCCGGAAGCAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGC
ATGGTCCAAGATTGTGGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGG
AAAGCCAATGA
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Synonyms
Publications