NO03G03000, NO03G03000 (gene) Nannochloropsis oceanica

Overview
NameNO03G03000
Unique NameNO03G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2212
Alignment locationchr3:899835..902046 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:899835..902046 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
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BLAST of NO03G03000 vs. NCBI_GenBank
Match: EWM29757.1 (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 141.0 bits (354), Expect = 8.900e-30
Identity = 90/219 (41.10%), Postives = 109/219 (49.77%), Query Frame = 0 
Query:  199 QFMGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEG----GNGGGELVAASSGSLPRDMMFTEGLAPLFSHANNLIRLILSHR-PMPVVNRGATNAQIARLPTHTLPRTTTSGVRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKLCTLPCSHVYHFK 413
            Q +G+ PG R++ R+SD +LRGLFP PP+RHR+ G    G G G LVAA   +    + F   LAPLFSHANNLIRLILS R   P ++RGAT AQI+RLP H +PR   S  R+                                                     G     +  DR +   T  E     CTIC+E YKGGEKLCTLPC+HVYHFK
Sbjct:  101 QVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAA----VAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKA----------------SDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFK 299
The following BLAST results are available for this feature:
BLAST of NO03G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29757.18.900e-3041.10zinc finger protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005597NSK005597Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03000.1NO03G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G03000.2NO03G03000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572397gene_1493Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g47gene896Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03000.1NO03G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G03000.2NO03G03000.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03000 ID=NO03G03000|Name=NO03G03000|organism=Nannochloropsis oceanica|type=gene|length=2212bp
TCGAGCCCCTACATCCATGGCACTATATTAAAGGCACCGGAGGTGGTTGA
CAGATATGGAGAGATTATGAGTAGTGATTTATTACTATGTTTGCATCAGA
AAAATATGAAGAAAGGGCGCGTAGTCAATGCGGCCTGGACTATGAGTGCC
ACGGGTTTCTCTGTTCTTCCGAAGTCACACCACCAAAAAATGGATTCCCG
GAGCATGGACACGCCTTTAACAGACCTCTCGCACTGTCCTCCTTGTCCTA
AGTCAGTGTCTGAGTGTAGATCGAGCGGGCGTTTGGGCCTGGTTTGTTGT
CCTGCGGAAATGAAGTGTAACGCTGTCGGCGAGTTCGGTCCCCGTCGCCA
TAATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTA
AAATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGAT
AACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTG
ACTCCCAAATgtaagcaagctggttgtttcgcacccctccatgctatgaa
tgaccacaacctgcatacccacatacagAATGCCGTCCCCACGGCACCCC
AAGTTCGCTGCAGCCGTCAGCTCACAACAAGCGAACAAGCGGCGCCGCCA
AGCTCCCGCCACGCCGAGTGCTGCCAGTGGATCCGCCGCCTCGGCATCTA
CTTTCCCGTCCTCCAGCTCGGTGGCACATGCAGCAGCGCCCTCCTCGTCT
TCCAGCAGCTCCAGCACCGCCTTATCTGCCGCCGTAACTATTCCCTCCGA
CCCGAGCTTTGACGCCAGCATGTCGTATGCAACAGCAGCAACCCGTCGCG
GCTCCGCCATGACAGCCTCGTCCGCTGCTTTTGCCTCGTCCTCGTCTAGG
TCCTCTGCTTCTACTCCCGCCGCACGCGGAGCCCCAGCGACAGGCTACAT
CGACCTGACCAGCGAGTTGAGCGACGAAAATGAGCTGGAGGAGGAGACTG
GAGACGAAGAGGTGCAATTTATGGGCATAACACCTGGGACACGCCAAGCA
ATCCGGTCCTCAGACATGCTGTTACGCGGACTCTTTCCCGCTCCCCCTGT
CCGTCACCGAGCCGAAGGTGGCAATGGCGGTGGCGAACTGGTTGCTGCCA
GCAGTGGTAGCCTTCCTCGTGACATGATGTTCACTGAGGGTTTGGCTCCG
CTCTTTTCGCACGCCAATAACCTGATTCGCCTCATCCTCTCGCATCGACC
TATGCCTGTCGTAAACCGAGGTGCCACCAACGCCCAGATCGCCCGCCTAC
CCACGCACACCCTCCCGCGCACCACCACCAGCGGTGTTCGCAGGGGGAAG
GGAACAGGAAGGAAGCGCAAGGCCCCGGGGGAGGTGCCTGTCCCTTCCAA
CGCCGAGTCAGAGAATGCTGACGTCAAGGCCATGGCTGTAGGTCAGCATA
ATGCAAGCAGCAGCAGCAGCAGCAGGGGTTGTGTAGCAGCGGCAGCCACC
TCGGGGGACGATCCAAATTTGAATATGCCGGACAGATCCAGCGTGGCGGC
AACAGCGGCGGAGGGGGGGCTGGATGCATGCACTATTTGCATGGAGGATT
ACAAGGGTGGGGAGAAACTTTGTACGCTGCCCTGCTCGCACGTCTACCAC
TTCAAGgtacgagaagacacaaatggatgggaaggcgatccaaataggga
aagatttatattctctcatgtttaaggtgtgagttgtcactcacccgctt
ttcttccacgccccctttttcgccaacagTGCTGCAAGAAGTGGTTGAAG
ACAAACAATATCTGTTGCATCTGCCGGGCGTCAATTGACAGCGGCTCTCC
CTAAGGATACCAAAACACCACTAGGATTTTTTCCCATACACATAGAGACC
AGCCTGATCAGCAACAGGAGCCGGAGGAAAGCGAGGGCGAGGAGGAGGAG
GAGGAGGAAGAGGTTCAGGATGTGAAGGAAAAGAAAGGGGGGTTTGAAAT
ATGAAGAGAAGGAGAAGTAAGAGGAGGACCAGGACCAGGAGGAAAAGGAA
GAAGAGGAGGAGCACGAAAGGAAGCGACGAAATAGTGTAGAGAGCAGTAC
ATACACCACAATTCAACAAGAATGGAGTTACCATTCAAGGCAAATGAAGT
AAAGAAGGGAAAAAATAGTGTGAAATTTACCGGGGAGTGGTGTGGATTGG
CCATGCATTCTT
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protein sequence of NO03G03000.1

>NO03G03000.1-protein ID=NO03G03000.1-protein|Name=NO03G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MHHRTRPDVRSRSLLLKSLVYLVLMPSSQLLQITRGQVWRRESSSAPLSD
SQIMPSPRHPKFAAAVSSQQANKRRRQAPATPSAASGSAASASTFPSSSS
VAHAAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRGSAMTAS
SAAFASSSSRSSASTPAARGAPATGYIDLTSELSDENELEEETGDEEVQF
MGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEGGNGGGELVAASSGSLPR
DMMFTEGLAPLFSHANNLIRLILSHRPMPVVNRGATNAQIARLPTHTLPR
TTTSGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSS
SRGCVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKL
CTLPCSHVYHFKCCKKWLKTNNICCICRASIDSGSP*
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protein sequence of NO03G03000.2

>NO03G03000.2-protein ID=NO03G03000.2-protein|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MHHRTRPDVRSRSLLLKSLVYLVLMPSSQLLQITRGQVWRRESSSAPLSD
SQIMPSPRHPKFAAAVSSQQANKRRRQAPATPSAASGSAASASTFPSSSS
VAHAAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRGSAMTAS
SAAFASSSSRSSASTPAARGAPATGYIDLTSELSDENELEEETGDEEVQF
MGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEGGNGGGELVAASSGSLPR
DMMFTEGLAPLFSHANNLIRLILSHRPMPVVNRGATNAQIARLPTHTLPR
TTTSGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSS
SRGCVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKL
CTLPCSHVYHFKVREDTNGWEGDPNRERFIFSHV*
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Synonyms
Publications