NO03G03000.2, NO03G03000.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03000.2
Unique NameNO03G03000.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2144
Alignment locationchr3:899835..902046 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:899835..902046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03000.2 vs.
Match: EWM29757.1 (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 1.100e-32
Identity = 129/323 (39.94%), Postives = 168/323 (52.01%), Query Frame = 0 
Query:  101 VAHAAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRG-----SAMTASSAAFASSSSRSSASTPAARGAPATGYIDLTSELSD-ENELEEETGDEEVQFMGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEG----GNGGGELVAASSGSLPRDMMFTEGLAPLFSHANNLIRLILSHR-PMPVVNRGATNAQIARLPTHTLPRTTTSGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSSSRGCVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKLCTLPCSHVYHFK 413
            V    AP++S+  S    +A +        +A+ SYA+  +  G     S +TAS+    S+  RS+             Y+DLT E  + E E  EE  +EEVQ +G+ PG R++ R+SD +LRGLFP PP+RHR+ G    G G G LVAA   +    + F   LAPLFSHANNLIRLILS R   P ++RGAT AQI+RLP H +PR   S         +KRKA       S+  +      A      + +      G   AAA  G     +  DR +   T  E     CTIC+E YKGGEKLCTLPC+HVYHFK
Sbjct:   14 VPRLRAPNNSAGRSPGGATAIL--------EANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDA---------NYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAA----VAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARS---------KKRKA-------SDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFK 299
The following BLAST results are available for this feature:
BLAST of NO03G03000.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29757.11.100e-3239.94zinc finger protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03000NO03G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03000.2NO03G03000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03000.2.cds1NO03G03000.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03000.2.cds2NO03G03000.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03000.2 ID=NO03G03000.2|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp
TCGAGCCCCTACATCCATGGCACTATATTAAAGGCACCGGAGGTGGTTGA
CAGATATGGAGAGATTATGAGTAGTGATTTATTACTATGTTTGCATCAGA
AAAATATGAAGAAAGGGCGCGTAGTCAATGCGGCCTGGACTATGAGTGCC
ACGGGTTTCTCTGTTCTTCCGAAGTCACACCACCAAAAAATGGATTCCCG
GAGCATGGACACGCCTTTAACAGACCTCTCGCACTGTCCTCCTTGTCCTA
AGTCAGTGTCTGAGTGTAGATCGAGCGGGCGTTTGGGCCTGGTTTGTTGT
CCTGCGGAAATGAAGTGTAACGCTGTCGGCGAGTTCGGTCCCCGTCGCCA
TAATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTA
AAATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGAT
AACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTG
ACTCCCAAATAATGCCGTCCCCACGGCACCCCAAGTTCGCTGCAGCCGTC
AGCTCACAACAAGCGAACAAGCGGCGCCGCCAAGCTCCCGCCACGCCGAG
TGCTGCCAGTGGATCCGCCGCCTCGGCATCTACTTTCCCGTCCTCCAGCT
CGGTGGCACATGCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCCAGCACC
GCCTTATCTGCCGCCGTAACTATTCCCTCCGACCCGAGCTTTGACGCCAG
CATGTCGTATGCAACAGCAGCAACCCGTCGCGGCTCCGCCATGACAGCCT
CGTCCGCTGCTTTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCTACTCCC
GCCGCACGCGGAGCCCCAGCGACAGGCTACATCGACCTGACCAGCGAGTT
GAGCGACGAAAATGAGCTGGAGGAGGAGACTGGAGACGAAGAGGTGCAAT
TTATGGGCATAACACCTGGGACACGCCAAGCAATCCGGTCCTCAGACATG
CTGTTACGCGGACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGCCGAAGG
TGGCAATGGCGGTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCCTTCCTC
GTGACATGATGTTCACTGAGGGTTTGGCTCCGCTCTTTTCGCACGCCAAT
AACCTGATTCGCCTCATCCTCTCGCATCGACCTATGCCTGTCGTAAACCG
AGGTGCCACCAACGCCCAGATCGCCCGCCTACCCACGCACACCCTCCCGC
GCACCACCACCAGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGGAAGCGC
AAGGCCCCGGGGGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGAGAATGC
TGACGTCAAGGCCATGGCTGTAGGTCAGCATAATGCAAGCAGCAGCAGCA
GCAGCAGGGGTTGTGTAGCAGCGGCAGCCACCTCGGGGGACGATCCAAAT
TTGAATATGCCGGACAGATCCAGCGTGGCGGCAACAGCGGCGGAGGGGGG
GCTGGATGCATGCACTATTTGCATGGAGGATTACAAGGGTGGGGAGAAAC
TTTGTACGCTGCCCTGCTCGCACGTCTACCACTTCAAGGTACGAGAAGAC
ACAAATGGATGGGAAGGCGATCCAAATAGGGAAAGATTTATATTCTCTCA
TGTTTAAGGTGTGAGTTGTCACTCACCCGCTTTTCTTCCACGCCCCCTTT
TTCGCCAACAGTGCTGCAAGAAGTGGTTGAAGACAAACAATATCTGTTGC
ATCTGCCGGGCGTCAATTGACAGCGGCTCTCCCTAAGGATACCAAAACAC
CACTAGGATTTTTTCCCATACACATAGAGACCAGCCTGATCAGCAACAGG
AGCCGGAGGAAAGCGAGGGCGAGGAGGAGGAGGAGGAGGAAGAGGTTCAG
GATGTGAAGGAAAAGAAAGGGGGGTTTGAAATATGAAGAGAAGGAGAAGT
AAGAGGAGGACCAGGACCAGGAGGAAAAGGAAGAAGAGGAGGAGCACGAA
AGGAAGCGACGAAATAGTGTAGAGAGCAGTACATACACCACAATTCAACA
AGAATGGAGTTACCATTCAAGGCAAATGAAGTAAAGAAGGGAAAAAATAG
TGTGAAATTTACCGGGGAGTGGTGTGGATTGGCCATGCATTCTT
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protein sequence of NO03G03000.2

>NO03G03000.2-protein ID=NO03G03000.2-protein|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MHHRTRPDVRSRSLLLKSLVYLVLMPSSQLLQITRGQVWRRESSSAPLSD
SQIMPSPRHPKFAAAVSSQQANKRRRQAPATPSAASGSAASASTFPSSSS
VAHAAAPSSSSSSSSTALSAAVTIPSDPSFDASMSYATAATRRGSAMTAS
SAAFASSSSRSSASTPAARGAPATGYIDLTSELSDENELEEETGDEEVQF
MGITPGTRQAIRSSDMLLRGLFPAPPVRHRAEGGNGGGELVAASSGSLPR
DMMFTEGLAPLFSHANNLIRLILSHRPMPVVNRGATNAQIARLPTHTLPR
TTTSGVRRGKGTGRKRKAPGEVPVPSNAESENADVKAMAVGQHNASSSSS
SRGCVAAAATSGDDPNLNMPDRSSVAATAAEGGLDACTICMEDYKGGEKL
CTLPCSHVYHFKVREDTNGWEGDPNRERFIFSHV*
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mRNA from alignment at chr3:899835..902046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03000.2 ID=NO03G03000.2|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2212bp|location=Sequence derived from alignment at chr3:899835..902046+ (Nannochloropsis oceanica)
TCGAGCCCCTACATCCATGGCACTATATTAAAGGCACCGGAGGTGGTTGA
CAGATATGGAGAGATTATGAGTAGTGATTTATTACTATGTTTGCATCAGA
AAAATATGAAGAAAGGGCGCGTAGTCAATGCGGCCTGGACTATGAGTGCC
ACGGGTTTCTCTGTTCTTCCGAAGTCACACCACCAAAAAATGGATTCCCG
GAGCATGGACACGCCTTTAACAGACCTCTCGCACTGTCCTCCTTGTCCTA
AGTCAGTGTCTGAGTGTAGATCGAGCGGGCGTTTGGGCCTGGTTTGTTGT
CCTGCGGAAATGAAGTGTAACGCTGTCGGCGAGTTCGGTCCCCGTCGCCA
TAATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTA
AAATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGAT
AACGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTG
ACTCCCAAATGTAAGCAAGCTGGTTGTTTCGCACCCCTCCATGCTATGAA
TGACCACAACCTGCATACCCACATACAGAATGCCGTCCCCACGGCACCCC
AAGTTCGCTGCAGCCGTCAGCTCACAACAAGCGAACAAGCGGCGCCGCCA
AGCTCCCGCCACGCCGAGTGCTGCCAGTGGATCCGCCGCCTCGGCATCTA
CTTTCCCGTCCTCCAGCTCGGTGGCACATGCAGCAGCGCCCTCCTCGTCT
TCCAGCAGCTCCAGCACCGCCTTATCTGCCGCCGTAACTATTCCCTCCGA
CCCGAGCTTTGACGCCAGCATGTCGTATGCAACAGCAGCAACCCGTCGCG
GCTCCGCCATGACAGCCTCGTCCGCTGCTTTTGCCTCGTCCTCGTCTAGG
TCCTCTGCTTCTACTCCCGCCGCACGCGGAGCCCCAGCGACAGGCTACAT
CGACCTGACCAGCGAGTTGAGCGACGAAAATGAGCTGGAGGAGGAGACTG
GAGACGAAGAGGTGCAATTTATGGGCATAACACCTGGGACACGCCAAGCA
ATCCGGTCCTCAGACATGCTGTTACGCGGACTCTTTCCCGCTCCCCCTGT
CCGTCACCGAGCCGAAGGTGGCAATGGCGGTGGCGAACTGGTTGCTGCCA
GCAGTGGTAGCCTTCCTCGTGACATGATGTTCACTGAGGGTTTGGCTCCG
CTCTTTTCGCACGCCAATAACCTGATTCGCCTCATCCTCTCGCATCGACC
TATGCCTGTCGTAAACCGAGGTGCCACCAACGCCCAGATCGCCCGCCTAC
CCACGCACACCCTCCCGCGCACCACCACCAGCGGTGTTCGCAGGGGGAAG
GGAACAGGAAGGAAGCGCAAGGCCCCGGGGGAGGTGCCTGTCCCTTCCAA
CGCCGAGTCAGAGAATGCTGACGTCAAGGCCATGGCTGTAGGTCAGCATA
ATGCAAGCAGCAGCAGCAGCAGCAGGGGTTGTGTAGCAGCGGCAGCCACC
TCGGGGGACGATCCAAATTTGAATATGCCGGACAGATCCAGCGTGGCGGC
AACAGCGGCGGAGGGGGGGCTGGATGCATGCACTATTTGCATGGAGGATT
ACAAGGGTGGGGAGAAACTTTGTACGCTGCCCTGCTCGCACGTCTACCAC
TTCAAGGTACGAGAAGACACAAATGGATGGGAAGGCGATCCAAATAGGGA
AAGATTTATATTCTCTCATGTTTAAGGTGTGAGTTGTCACTCACCCGCTT
TTCTTCCACGCCCCCTTTTTCGCCAACAGTGCTGCAAGAAGTGGTTGAAG
ACAAACAATATCTGTTGCATCTGCCGGGCGTCAATTGACAGCGGCTCTCC
CTAAGGATACCAAAACACCACTAGGATTTTTTCCCATACACATAGAGACC
AGCCTGATCAGCAACAGGAGCCGGAGGAAAGCGAGGGCGAGGAGGAGGAG
GAGGAGGAAGAGGTTCAGGATGTGAAGGAAAAGAAAGGGGGGTTTGAAAT
ATGAAGAGAAGGAGAAGTAAGAGGAGGACCAGGACCAGGAGGAAAAGGAA
GAAGAGGAGGAGCACGAAAGGAAGCGACGAAATAGTGTAGAGAGCAGTAC
ATACACCACAATTCAACAAGAATGGAGTTACCATTCAAGGCAAATGAAGT
AAAGAAGGGAAAAAATAGTGTGAAATTTACCGGGGAGTGGTGTGGATTGG
CCATGCATTCTT
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Coding sequence (CDS) from alignment at chr3:899835..902046+

>NO03G03000.2 ID=NO03G03000.2|Name=NO03G03000.2|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr3:899835..902046+ (Nannochloropsis oceanica)
ATGCATCATCGCACGCGGCCCGACGTACGAAGCCGCTCTCTCCTCCTAAA
ATCATTGGTATATCTAGTCCTCATGCCATCTTCCCAACTTCTACAGATAA
CGCGAGGCCAGGTGTGGCGGCGCGAGTCGTCGTCGGCGCCGCTTTCTGAC
TCCCAAATAATGCCGTCCCCACGGCACCCCAAGTTCGCTGCAGCCGTCAG
CTCACAACAAGCGAACAAGCGGCGCCGCCAAGCTCCCGCCACGCCGAGTG
CTGCCAGTGGATCCGCCGCCTCGGCATCTACTTTCCCGTCCTCCAGCTCG
GTGGCACATGCAGCAGCGCCCTCCTCGTCTTCCAGCAGCTCCAGCACCGC
CTTATCTGCCGCCGTAACTATTCCCTCCGACCCGAGCTTTGACGCCAGCA
TGTCGTATGCAACAGCAGCAACCCGTCGCGGCTCCGCCATGACAGCCTCG
TCCGCTGCTTTTGCCTCGTCCTCGTCTAGGTCCTCTGCTTCTACTCCCGC
CGCACGCGGAGCCCCAGCGACAGGCTACATCGACCTGACCAGCGAGTTGA
GCGACGAAAATGAGCTGGAGGAGGAGACTGGAGACGAAGAGGTGCAATTT
ATGGGCATAACACCTGGGACACGCCAAGCAATCCGGTCCTCAGACATGCT
GTTACGCGGACTCTTTCCCGCTCCCCCTGTCCGTCACCGAGCCGAAGGTG
GCAATGGCGGTGGCGAACTGGTTGCTGCCAGCAGTGGTAGCCTTCCTCGT
GACATGATGTTCACTGAGGGTTTGGCTCCGCTCTTTTCGCACGCCAATAA
CCTGATTCGCCTCATCCTCTCGCATCGACCTATGCCTGTCGTAAACCGAG
GTGCCACCAACGCCCAGATCGCCCGCCTACCCACGCACACCCTCCCGCGC
ACCACCACCAGCGGTGTTCGCAGGGGGAAGGGAACAGGAAGGAAGCGCAA
GGCCCCGGGGGAGGTGCCTGTCCCTTCCAACGCCGAGTCAGAGAATGCTG
ACGTCAAGGCCATGGCTGTAGGTCAGCATAATGCAAGCAGCAGCAGCAGC
AGCAGGGGTTGTGTAGCAGCGGCAGCCACCTCGGGGGACGATCCAAATTT
GAATATGCCGGACAGATCCAGCGTGGCGGCAACAGCGGCGGAGGGGGGGC
TGGATGCATGCACTATTTGCATGGAGGATTACAAGGGTGGGGAGAAACTT
TGTACGCTGCCCTGCTCGCACGTCTACCACTTCAAGGTACGAGAAGACAC
AAATGGATGGGAAGGCGATCCAAATAGGGAAAGATTTATATTCTCTCATG
TTTAA
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Synonyms
Publications