NO03G02920, NO03G02920 (gene) Nannochloropsis oceanica

Overview
NameNO03G02920
Unique NameNO03G02920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2215
Alignment locationchr3:878372..880586 +

Link to JBrowse

Properties
Property NameValue
DescriptionIsocitrate dehydrogenase [NADP]
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:878372..880586 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004450isocitrate dehydrogenase (NADP+) activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006102isocitrate metabolic process
GO:0055114oxidation-reduction process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR004790Isocitrate_DH_NADP
IPR024084IsoPropMal-DH-like_dom
Homology
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: EWM29773.1 (isocitrate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 792.0 bits (2044), Expect = 1.000e-225
Identity = 392/447 (87.70%), Postives = 410/447 (91.72%), Query Frame = 0 
Query:    1 MMRS-AFLGSRAAARAS--SSTLSSLPLLVTTRSFTRTAMVAAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYDNL 445
            MMRS  F+ SR  ++ S  SS+  +L  L+ +RSF+RTA V AKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKK+NVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDF+VDKPGKFEMTFTSTDGTEKK+WNV+DFKGAGVGMAMYNT+ESIRGFAHSCFAYALMKGWPLFLSTKNTILK+YDGRFK                  GI+YTHRLIDDMVAQVLK EGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNN  L+KF+LDME AVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTY+NL
Sbjct:    1 MMRSVGFISSRTVSQTSSFSSSPPALYRLMDSRSFSRTAAVGAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKFNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFVVDKPGKFEMTFTSTDGTEKKTWNVFDFKGAGVGMAMYNTDESIRGFAHSCFAYALMKGWPLFLSTKNTILKKYDGRFKXXXXXXXXXXXXXXXXXMGITYTHRLIDDMVAQVLKSEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNPILTKFSLDMEAAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYENL 447
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: PRW58539.1 (isocitrate NADP-dependent isoform B [Chlorella sorokiniana])

HSP 1 Score: 665.6 bits (1716), Expect = 1.100e-187
Identity = 315/410 (76.83%), Postives = 353/410 (86.10%), Query Frame = 0 
Query:   36 AMVAAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWT-VSPDKYLTTDAFLDKVKLTYDNL 445
            A  A KIKVENPVVDLDGDEMTRVIW QIK+KLI PY+DLKIEYYDLGLPNRD T+DQVT+DAANAIKK+NVGIKCATITPDE RV+EF LK+MW+SPNGTIRNILNGTVFREPIVI NIPR++PGW KPIVVGRHAFGDQYRATDF+V   GK EMTFT  DG E   + ++DFKG GV + MYNTEESIRGFA SCF YAL + WPL+LSTKNTILK+YDGRF  IF+EIY   Y+ ++E  GI Y HRLIDDMVAQ LK  GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+TPDG+TVE+EAAHGTVTRHWRE+QKG PTSTNPIASIFAWTRGL HRAKLD N +L KF  D+E AVI+TVE+G MTKDLAICVHG T V+PD+Y+ T+ F+DK+K T++ L
Sbjct:    2 AAAAGKIKVENPVVDLDGDEMTRVIWNQIKEKLIFPYVDLKIEYYDLGLPNRDATDDQVTIDAANAIKKHNVGIKCATITPDEARVKEFSLKKMWKSPNGTIRNILNGTVFREPIVIDNIPRLVPGWKKPIVVGRHAFGDQYRATDFVVPGAGKLEMTFTPADGGEPVKYEIFDFKGEGVALGMYNTEESIRGFAESCFQYALSRKWPLYLSTKNTILKKYDGRFMQIFDEIYRTKYQQQFENVGIWYEHRLIDDMVAQGLKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVTPDGRTVEAEAAHGTVTRHWREFQKGNPTSTNPIASIFAWTRGLAHRAKLDGNDELLKFCTDLEAAVIRTVEEGSMTKDLAICVHGTTKVTPDQYMNTEPFMDKIKETFEKL 411
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: PRW58540.1 (isocitrate NADP-dependent isoform A [Chlorella sorokiniana])

HSP 1 Score: 665.6 bits (1716), Expect = 1.100e-187
Identity = 315/410 (76.83%), Postives = 353/410 (86.10%), Query Frame = 0 
Query:   36 AMVAAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWT-VSPDKYLTTDAFLDKVKLTYDNL 445
            A  A KIKVENPVVDLDGDEMTRVIW QIK+KLI PY+DLKIEYYDLGLPNRD T+DQVT+DAANAIKK+NVGIKCATITPDE RV+EF LK+MW+SPNGTIRNILNGTVFREPIVI NIPR++PGW KPIVVGRHAFGDQYRATDF+V   GK EMTFT  DG E   + ++DFKG GV + MYNTEESIRGFA SCF YAL + WPL+LSTKNTILK+YDGRF  IF+EIY   Y+ ++E  GI Y HRLIDDMVAQ LK  GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+TPDG+TVE+EAAHGTVTRHWRE+QKG PTSTNPIASIFAWTRGL HRAKLD N +L KF  D+E AVI+TVE+G MTKDLAICVHG T V+PD+Y+ T+ F+DK+K T++ L
Sbjct:    2 AAAAGKIKVENPVVDLDGDEMTRVIWNQIKEKLIFPYVDLKIEYYDLGLPNRDATDDQVTIDAANAIKKHNVGIKCATITPDEARVKEFSLKKMWKSPNGTIRNILNGTVFREPIVIDNIPRLVPGWKKPIVVGRHAFGDQYRATDFVVPGAGKLEMTFTPADGGEPVKYEIFDFKGEGVALGMYNTEESIRGFAESCFQYALSRKWPLYLSTKNTILKKYDGRFMQIFDEIYRTKYQQQFENVGIWYEHRLIDDMVAQGLKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVTPDGRTVEAEAAHGTVTRHWREFQKGNPTSTNPIASIFAWTRGLAHRAKLDGNDELLKFCTDLEAAVIRTVEEGSMTKDLAICVHGTTKVTPDQYMNTEPFMDKIKETFEKL 411
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: XP_008896491.1 (isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica INRA-310] >ETN18887.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica INRA-310] >KUG02231.1 Isocitrate dehydrogenase [Phytophthora nicotianae])

HSP 1 Score: 661.0 bits (1704), Expect = 2.700e-186
Identity = 309/402 (76.87%), Postives = 354/402 (88.06%), Query Frame = 0 
Query:   41 KIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYD 443
            KIKV  P+V+LDGDEMTRVIW QIKDK I PYLDL IEY+DLGLP+RD TNDQVT+DAA+AI+++NVGIKCATITPDEQRVEEFKLK+MWRSPNGTIRNILNGTVFREPIVISN+PR++PGW KPIVVGRHAFGDQY++TDFI   PGKFE+ +T  DG +K+++ VYDFKG GVG+AMYNT+ESI GFA SC ++AL K   L+LSTKNTILK+YDGRFKDIFEE+Y  ++KAKY+A GISYTHRLIDDMVAQ LK +GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDGKTVE+EAAHGTVTRHWR+YQ+GK TSTNPIASI+AWTRGL HR KLD N +L  F+L +E AVIKTVE G MTKDLAIC+HG  V+PD YL T+ F+DKVK T+D
Sbjct:   22 KIKVHKPIVELDGDEMTRVIWSQIKDKYIHPYLDLDIEYFDLGLPHRDATNDQVTIDAAHAIQEHNVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGGDKQTFEVYDFKGPGVGLAMYNTDESIYGFAKSCLSFALSKNQDLYLSTKNTILKKYDGRFKDIFEEVYQSEFKAKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQQGKKTSTNPIASIYAWTRGLAHRGKLDGNQELVNFSLGLEDAVIKTVEAGHMTKDLAICIHGSNVTPDHYLYTEDFMDKVKDTFD 423
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: ETO64449.1 (isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica P1976])

HSP 1 Score: 661.0 bits (1704), Expect = 2.700e-186
Identity = 309/402 (76.87%), Postives = 354/402 (88.06%), Query Frame = 0 
Query:   41 KIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYD 443
            KIKV  P+V+LDGDEMTRVIW QIKDK I PYLDL IEY+DLGLP+RD TNDQVT+DAA+AI+++NVGIKCATITPDEQRVEEFKLK+MWRSPNGTIRNILNGTVFREPIVISN+PR++PGW KPIVVGRHAFGDQY++TDFI   PGKFE+ +T  DG +K+++ VYDFKG GVG+AMYNT+ESI GFA SC ++AL K   L+LSTKNTILK+YDGRFKDIFEE+Y  ++KAKY+A GISYTHRLIDDMVAQ LK +GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDGKTVE+EAAHGTVTRHWR+YQ+GK TSTNPIASI+AWTRGL HR KLD N +L  F+L +E AVIKTVE G MTKDLAIC+HG  V+PD YL T+ F+DKVK T+D
Sbjct:   22 KIKVHKPIVELDGDEMTRVIWSQIKDKYIHPYLDLNIEYFDLGLPHRDATNDQVTIDAAHAIQEHNVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGGDKQTFEVYDFKGPGVGLAMYNTDESIYGFAKSCLSFALSKNQDLYLSTKNTILKKYDGRFKDIFEEVYQSEFKAKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQQGKKTSTNPIASIYAWTRGLAHRGKLDGNQELVDFSLGLEDAVIKTVEAGHMTKDLAICIHGSNVTPDHYLYTEDFMDKVKDTFD 423
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: OQR95917.1 (isocitrate dehydrogenase, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 661.0 bits (1704), Expect = 2.700e-186
Identity = 313/417 (75.06%), Postives = 358/417 (85.85%), Query Frame = 0 
Query:   27 VTTRSFTRTAMVAAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWT-VSPDKYLTTDAFLDKVKLTYD 443
            V   +  R +  A KI V NPVVDLDGDEMTRVIW QIK K + PYLD+ IEY+DLGLPNRD TNDQVT+DAA+AIK++NVGIKCATITPDE+RVEEFKLK+MW+SPNGTIRNILNGTVFREPIVISN+PR++PGW KPIVVGRHAFGDQY+ TDF+ + PGKFEM+FT  +G  K+SW V+DFKG GVGM MYNTEESI  FA+SC ++AL K   L+LSTKNTILK+YDGRFKDIFEE+Y  ++K+KY+A GISYTHRLIDDMVAQ LK +GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDGKTVE+EAAHGTVTRHWREYQKGK TSTNPIAS++AWTRGL HR KLD N +L KF  D E +VI+TVE G MTKDLAICVHG T V+PD+YLTT+ F+D+VK T D
Sbjct:    5 VAVATSRRFSSQAKKIVVANPVVDLDGDEMTRVIWDQIKTKFVHPYLDVNIEYFDLGLPNRDVTNDQVTIDAAHAIKEFNVGIKCATITPDEERVEEFKLKQMWKSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKCTDFVAEGPGKFEMSFTPANGGPKQSWEVFDFKGPGVGMGMYNTEESIYAFANSCLSFALNKKQDLYLSTKNTILKKYDGRFKDIFEEVYQNEFKSKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLLAPDGKTVEAEAAHGTVTRHWREYQKGKATSTNPIASMYAWTRGLAHRGKLDGNDELIKFCNDWEASVIQTVENGHMTKDLAICVHGTTNVTPDQYLTTEPFMDEVKKTLD 421
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: OWZ16935.1 (Isocitrate dehydrogenase [Phytophthora megakarya])

HSP 1 Score: 661.0 bits (1704), Expect = 2.700e-186
Identity = 311/402 (77.36%), Postives = 354/402 (88.06%), Query Frame = 0 
Query:   41 KIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYD 443
            KIKV  P+V+LDGDEMTRVIW QIKDK I PYLDL IEY+DLGLP+RD TNDQVTVDAA+AI++++VGIKCATITPDEQRVEEFKLK+MWRSPNGTIRNILNGTVFREPIVISN+PR++PGW KPIVVGRHAFGDQY++TDFI   PGKFE+ +T  DG EK+++ VYDFKG GVG+AMYNT+ESI GFA SC ++AL K   L+LSTKNTILK+YDGRFKDIFEE+Y  ++KAKY+A GISYTHRLIDDMVAQ LK +GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDGKTVE+EAAHGTVTRHWR+YQKG+ TSTNPIASI+AWTRGL HR KLD N +L  F+L +E AVIKTVE G MTKDLAICVHG  V+PD YL T+ F+DKVK T+D
Sbjct:   22 KIKVHKPIVELDGDEMTRVIWSQIKDKYIHPYLDLDIEYFDLGLPHRDATNDQVTVDAAHAIQEHHVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPNDGGEKQTFEVYDFKGPGVGLAMYNTDESIYGFAKSCLSFALSKNQDLYLSTKNTILKKYDGRFKDIFEEVYQSEFKAKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQKGEKTSTNPIASIYAWTRGLAHRGKLDGNQELIDFSLGLENAVIKTVEAGHMTKDLAICVHGSNVTPDHYLFTEDFMDKVKDTFD 423
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: XP_005851119.1 (hypothetical protein CHLNCDRAFT_55969 [Chlorella variabilis] >EFN59017.1 hypothetical protein CHLNCDRAFT_55969 [Chlorella variabilis])

HSP 1 Score: 660.6 bits (1703), Expect = 3.500e-186
Identity = 318/422 (75.36%), Postives = 355/422 (84.12%), Query Frame = 0 
Query:   32 FTRTAMVAAKIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKG--------AGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWT-VSPDKYLTTDAFLDKVKLTYDNL 445
            F   A  A KIKVENPVVDLDGDEMTRVIW QIK+KLI PY+DLK+EYYDLGLP+RD T+DQ+T+DAANAIKK++VGIKCATITPDE RV+EF LK+MWRSPNGTIRNILNGTVFREPIVI NIPR++PGW KPIVVGRHAFGDQYRATDF+VD PGK EM FT   G   + + +YDFKG        AGV + MYNTEESIRGFA SCF YAL + WPL+LSTKNTILK+YDGRF  IF+EIY   Y+ ++E  GI Y HRLIDDMVAQ LK  GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+TPDG+TVE+EAAHGTVTRHWREYQKG PTSTNPIASIFAWTRGL HRAKLD N +L KF  DME AVIKTVE G MTKDLAICVHG T V+PD+Y+ T+ F+DK+K T+D+L
Sbjct:   46 FREMASAAGKIKVENPVVDLDGDEMTRVIWNQIKEKLIFPYVDLKLEYYDLGLPSRDATDDQITIDAANAIKKHSVGIKCATITPDEGRVKEFGLKKMWRSPNGTIRNILNGTVFREPIVIDNIPRLVPGWKKPIVVGRHAFGDQYRATDFVVDGPGKLEMIFTPEGGGAPQQFTIYDFKGKRAAGLIWAGVALGMYNTEESIRGFAESCFQYALSRKWPLYLSTKNTILKKYDGRFMQIFDEIYHTKYQTQFENLGIWYEHRLIDDMVAQGLKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVTPDGRTVEAEAAHGTVTRHWREYQKGNPTSTNPIASIFAWTRGLAHRAKLDGNEELLKFCGDMEAAVIKTVEAGHMTKDLAICVHGTTKVTPDQYMYTEPFMDKIKETFDSL 467
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: ETI35760.1 (isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica P1569] >ETK75981.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica] >ETL29429.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica] >ETL82657.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica] >ETM35896.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica] >ETP05555.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica CJ01A1] >ETP33687.1 isocitrate dehydrogenase, NADP-dependent [Phytophthora parasitica P10297])

HSP 1 Score: 660.6 bits (1703), Expect = 3.500e-186
Identity = 309/402 (76.87%), Postives = 354/402 (88.06%), Query Frame = 0 
Query:   41 KIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYD 443
            KIKV  P+V+LDGDEMTRVIW QIKDK I PYLDL IEY+DLGLP+RD TNDQVT+DAA+AI+++NVGIKCATITPDEQRVEEFKLK+MWRSPNGTIRNILNGTVFREPIVISN+PR++PGW KPIVVGRHAFGDQY++TDFI   PGKFE+ +T  DG +K+++ VYDFKG GVG+AMYNT+ESI GFA SC ++AL K   L+LSTKNTILK+YDGRFKDIFEE+Y  ++KAKY+A GISYTHRLIDDMVAQ LK +GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDGKTVE+EAAHGTVTRHWR+YQ+GK TSTNPIASI+AWTRGL HR KLD N +L  F+L +E AVIKTVE G MTKDLAIC+HG  V+PD YL T+ F+DKVK T+D
Sbjct:   22 KIKVHKPIVELDGDEMTRVIWSQIKDKYIHPYLDLDIEYFDLGLPHRDATNDQVTIDAAHAIQEHNVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGGDKQTFEVYDFKGPGVGLAMYNTDESIYGFAKSCLSFALSKNQDLYLSTKNTILKKYDGRFKDIFEEVYQSEFKAKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQQGKKTSTNPIASIYAWTRGLAHRGKLDGNQELVDFSLGLEDAVIKTVEAGHMTKDLAICIHGSNVTPDHYLYTEDFMDKVKDTFD 423
[Close]
BLAST of NO03G02920 vs. NCBI_GenBank
Match: XP_009521158.1 (hypothetical protein PHYSODRAFT_354100 [Phytophthora sojae] >EGZ25870.1 hypothetical protein PHYSODRAFT_354100 [Phytophthora sojae])

HSP 1 Score: 659.4 bits (1700), Expect = 7.700e-186
Identity = 309/402 (76.87%), Postives = 353/402 (87.81%), Query Frame = 0 
Query:   41 KIKVENPVVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAANAIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGTEKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKNTILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYD 443
            KIKV  P+V+LDGDEMTRVIW QIKDK I PYLDL IEY+DLGLP+RD TNDQVT+DAA+AI++++VGIKCATITPDEQRVEEFKLK+MWRSPNGTIRNILNGTVFREPIVISN+PR++PGW KPIVVGRHAFGDQY++TDFI   PGKFE+ +T  DG+EK +  VYDFKG GVG+AMYNT+ESI GFA SC ++AL K   L+LSTKNTILK+YDGRFKDIFEE+Y  ++KAKY+A GISYTHRLIDDMVAQ LK +GG VWACKNYDGDVQSDIVAQGYGSLGLMTSVL+ PDGKTVE+EAAHGTVTRHWR+YQ+GK TSTNPIASI+AWTRGL HR KLD N +L  F+L +E AVIKTVE G MTKDLAIC+HG  V+PD YL T+ F+DKVK T+D
Sbjct:   22 KIKVHKPIVELDGDEMTRVIWSQIKDKYIHPYLDLDIEYFDLGLPHRDATNDQVTIDAAHAIQEHHVGIKCATITPDEQRVEEFKLKKMWRSPNGTIRNILNGTVFREPIVISNVPRLVPGWKKPIVVGRHAFGDQYKSTDFIAPGPGKFEVVYTPADGSEKTTLEVYDFKGPGVGLAMYNTDESIYGFAKSCLSFALSKNQDLYLSTKNTILKKYDGRFKDIFEEVYQNEFKAKYDAAGISYTHRLIDDMVAQALKSDGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVAPDGKTVEAEAAHGTVTRHWRQYQQGKKTSTNPIASIYAWTRGLAHRGKLDGNQELIDFSLGLEDAVIKTVEAGHMTKDLAICIHGSNVTPDHYLYTEDFMDKVKETFD 423
The following BLAST results are available for this feature:
BLAST of NO03G02920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29773.11.000e-22587.70isocitrate dehydrogenase [Nannochloropsis gaditana... [more]
PRW58539.11.100e-18776.83isocitrate NADP-dependent isoform B [Chlorella sor... [more]
PRW58540.11.100e-18776.83isocitrate NADP-dependent isoform A [Chlorella sor... [more]
XP_008896491.12.700e-18676.87isocitrate dehydrogenase, NADP-dependent [Phytopht... [more]
ETO64449.12.700e-18676.87isocitrate dehydrogenase, NADP-dependent [Phytopht... [more]
OQR95917.12.700e-18675.06isocitrate dehydrogenase, mitochondrial precursor ... [more]
OWZ16935.12.700e-18677.36Isocitrate dehydrogenase [Phytophthora megakarya][more]
XP_005851119.13.500e-18675.36hypothetical protein CHLNCDRAFT_55969 [Chlorella v... [more]
ETI35760.13.500e-18676.87isocitrate dehydrogenase, NADP-dependent [Phytopht... [more]
XP_009521158.17.700e-18676.87hypothetical protein PHYSODRAFT_354100 [Phytophtho... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005604NSK005604Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02920.1NO03G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572358gene_1484Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g53gene902Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02920.1NO03G02920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02920 ID=NO03G02920|Name=NO03G02920|organism=Nannochloropsis oceanica|type=gene|length=2215bp
AGGGGATAGGCAACGCAAGGCTAGCATCCAAAGCTCCTTGAGCCATACGT
AAAGTAAGTATCAAGTATGATGCGCTCCGCTTTCCTGGGCAGCCGGGCGG
CCGCTCGAGCATCCTCCTCGACGCTCTCTTCGCTACCTCTGCTGGTGACA
ACTCGCTCTTgtaagtaaaacgtttgcattgtaagccggcatcgcatgtc
atggccgtggctgcggtcttatccgctgtacgcctctcgctgtcctcttc
ccctccctatatcctggctgttcgaatctccagcttccttcctcttgccg
cttgtgtgtgtgttgaactcggcttccagctctgtgtgattgcgtgtatg
agggtgcctagtcgctcattttcccttgtcgccatttcttttcccattct
tgtaccccccggaaaacagTCACGCGGACGGCTATGGTGGCGGCCAAGAT
CAAGGTGGAAAACCCCGTGGTGGACCTTGACGGTGATGAGATGACGCGCG
TGATCTGGAAGCAGATCAAAGACAAACTCATCCTGCCCTACCTGGATCTG
AAGATCGAATACTACGACCTTGGCCTGCCTAACCGCGATAAGACTAACGA
CCAGGTGACGGTAGACGCGGCAAACGCCATCAAGAAGTACAACGTGGGCA
TCAAGTGCGCTACCATCACGCCAGATGAGCAGCGGGTGGAGGAGTTCAAG
CTCAAAGAGATGTGGCGCTCGCCCAACGGGACCATCCGTAACATTTTGAA
CGGAACGGTCTTCCGTGAGCCCATCGTAATCTCCAACATTCCGCGAATCA
TTCCGGGCTGGGTCAAGCCCATCGTTGTCGGCCGCCACGCCTTCGGAGAC
CAGTATCGCGCCACGGATTTCATAGTAGACAAGCCTGGCAAATTTGAGAT
GACGTTTACTTCCACAGACGGCACGGAGAAGAAGAGCTGGAACGTGTACG
ACTTCAAGGGCGCCGGCGTGGGTATGGCCATGTACAACACCGAGGAGgtg
ggtgggtgtggttgatttctcaatttagattgtatctttggttgatttct
cgatatatagtttaaggagagaagtttacatgtcttgttgtgtgtgttgt
ctataccttaatcctccagttgagcttcctcgcttgtatactatccgttc
ctaattggttactgactcatcaaacatctcacatcaacaccccaccgctt
ctttttttttctatcacacatcaaccccacattcagTCCATCCGTGGCTT
CGCGCACTCGTGCTTTGCTTACGCTTTGATGAAGGGGTGGCCGCTGTTTT
TGAGCACGAAGAACACGATCCTGAAGCGGTACGACGGCCGGTTTAAGGAC
ATCTTCGAAGAGATCTACGTGAAGGACTACAAGGCCAAGTACGAGGCGCA
GGGCATCAGCTACACGCACCGCTTGATCGACGACATGGTTGCGCAGGTAC
TCAAGGGCGAGGGCGGCGTTGTCTGGGCCTGCAAAAATTACGACGGCGAC
GTGCAGTCCGACATCGTCGCGCAGGGTTACGGGTCGCTGGGTCTCATGAC
CTCGGTCCTTATCACGCCCGACGGCAAGACGGTCGAGTCCGAGGCCGCGC
ATGGCACCGTCACCCGGCACTGGCGCGAGTATCAGAAGGGGAAGCCCACC
AGCACCAATCCCATCGCGTCCATCTTTGCCTGGACTCGCGGGCTGCAGCA
CCGCGCCAAGCTGGACAACAACACGGACCTGTCCAAATTCGCGCTGGATA
TGGAGTTGGCCGTGATCAAGACAGTTGAGAAGGGCTTCATGACCAAGGAT
CTGGCCATCTGCGTGCATGGATGGACCGTCAGCCCCGACAAGTACCTTAC
CACGGACGCCTTCCTGGATAAGGTCAAGCTCACTTACGACAACCTTTACG
ACCACGTCACGTTGTAATCAACTGGCTTTTGGGGAATGGAGGGCCAAGTC
GGAAAGAGAAGCGGTGGGGGTGTGCCGCAGGATGATTGTACGGGGAGGTG
TACAAGGGAGAGGCACGTGCAAGACAAGGAGCCTGTACCTGTTACTTTAG
TTCGTCGAGGAAGGGAAGGAGAGGGAGAGTATATTTTCCGAACATTTTGA
CCTTTTCACAGAAAAGCAGGCGCACAAGATCAGCTGTCTCTATAGCTGTT
TCTTGTCGGGCTGAAAGAGGTAAAAGAAAGAGAGAAAGAGTAAAGAAGGA
AATCGTATCCGTCAA
back to top

protein sequence of NO03G02920.1

>NO03G02920.1-protein ID=NO03G02920.1-protein|Name=NO03G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MMRSAFLGSRAAARASSSTLSSLPLLVTTRSFTRTAMVAAKIKVENPVVD
LDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVDAAN
AIKKYNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFREPI
VISNIPRIIPGWVKPIVVGRHAFGDQYRATDFIVDKPGKFEMTFTSTDGT
EKKSWNVYDFKGAGVGMAMYNTEESIRGFAHSCFAYALMKGWPLFLSTKN
TILKRYDGRFKDIFEEIYVKDYKAKYEAQGISYTHRLIDDMVAQVLKGEG
GVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHGTVT
RHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNTDLSKFALDMELAV
IKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYDNLYDHVTL
*
back to top
Synonyms
Publications